FC923320

Overview
NameFC923320
Unique NameFC923320
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length563
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923320 vs. ExPASy Swiss-Prot
Match: FTSH_AQUAE (Cell division protease ftsH homolog OS=Aquifex aeolicus GN=ftsH PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.468e-20
Identity = 56/118 (47.46%), Postives = 77/118 (65.25%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKER--SPETWRQVAINEAAMAVVAV 349
            L+RPGRFDR+IFIPKP + GR EILKVHAR K +A DVD   VA  T G  GA+L N++  AA+   R G+ EIT +++ +A      G L+RK    SP+   ++AI+EA  A++ +
Sbjct:  311 LLRPGRFDRQIFIPKPDVRGRYEILKVHARNKKLAKDVDLEFVARATPGFTGADLENLLNEAALLAARKGKEEITMEEIEEALDRITMG-LERKGMTISPKEKEKIAIHEAGHALMGL 427          
BLAST of FC923320 vs. ExPASy Swiss-Prot
Match: FTSH_HELFE (Cell division protease ftsH homolog OS=Helicobacter felis GN=ftsH PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.924e-17
Identity = 50/119 (42.02%), Postives = 77/119 (64.71%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGM--LDRKER--SPETWRQVAINEAAMAVVA 346
            L+RPGRFDR++ + KP   GR+EILKVH +   +A+DVD   +A +T G+ GA+LANI+  AA+   R+ + E+    L +A    ERG+  L++K R  SP+  + VA +E+  AV++
Sbjct:  333 LLRPGRFDRQVLVDKPDFKGRVEILKVHIKPVKLANDVDLQEIAKLTAGLAGADLANIINEAALLAGRNNQKEVKQQHLKEAV---ERGIAGLEKKSRRISPKEKKIVAYHESGHAVIS 448          
BLAST of FC923320 vs. ExPASy Swiss-Prot
Match: FTSH_HELPY (Cell division protease ftsH homolog OS=Helicobacter pylori GN=ftsH PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.491e-16
Identity = 50/119 (42.02%), Postives = 77/119 (64.71%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGM--LDRKER--SPETWRQVAINEAAMAVVA 346
            L+RPGRFDR++ + KP   GR+EILKVH +   +A+DV+   VA +T G+ GA+LANI+  AA+   R+ + E+    L +A    ERG+  L++K R  SP+  + VA +E+  AV++
Sbjct:  327 LMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQKEVRQQHLKEAV---ERGIAGLEKKSRRISPKEKKIVAYHESGHAVIS 442          
BLAST of FC923320 vs. ExPASy Swiss-Prot
Match: FTSH_HELPJ (Cell division protease ftsH homolog OS=Helicobacter pylori J99 GN=ftsH PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.491e-16
Identity = 50/119 (42.02%), Postives = 77/119 (64.71%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGM--LDRKER--SPETWRQVAINEAAMAVVA 346
            L+RPGRFDR++ + KP   GR+EILKVH +   +A+DV+   VA +T G+ GA+LANI+  AA+   R+ + E+    L +A    ERG+  L++K R  SP+  + VA +E+  AV++
Sbjct:  327 LMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQKEVKQQHLKEAV---ERGIAGLEKKSRRISPKEKKIVAYHESGHAVIS 442          
BLAST of FC923320 vs. ExPASy Swiss-Prot
Match: PSMR_AERPE (Proteasome-activating nucleotidase OS=Aeropyrum pernix GN=pan PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.666e-16
Identity = 43/94 (45.74%), Postives = 62/94 (65.96%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRK 283
            ++RPGRFDR I +P P L GR+EIL +H RK  MA DVD  A+A +T+G  GA+L  +V  A  N +R G   IT DD+++A + + +  LD++
Sbjct:  295 VLRPGRFDRIIEVPLPSLRGRLEILGIHTRKAKMAPDVDLEAIAKLTEGFSGADLKAVVVEAGYNAIRRGSRVITMDDMIKAVE-KVKAALDKR 387          
BLAST of FC923320 vs. ExPASy Swiss-Prot
Match: FTSH5_ORYSJ (Cell division protease ftsH homolog 5, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH5 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.400e-16
Identity = 49/121 (40.50%), Postives = 72/121 (59.50%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKER----SPETWRQVAINEAAMAVVAVN 352
            LVRPGRFDR I +P P + GR +IL+ H  K   +DDVD + +A  T G  GA+LAN+V VAA+    DG   +T +DL  A   ++R M+  + +    S E+ +  A +E   A+VA++
Sbjct:  382 LVRPGRFDRHIVVPNPDVEGRRQILESHMSKVLKSDDVDLMIIARGTPGFSGADLANLVNVAALKAAMDGAKAVTMNDLEYA---KDRIMMGSERKSAVISDESRKLTAYHEGGHALVAIH 499          
BLAST of FC923320 vs. ExPASy Swiss-Prot
Match: FTSH4_ARATH (Cell division protease ftsH homolog 4, mitochondrial OS=Arabidopsis thaliana GN=FTSH4 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 7.400e-16
Identity = 49/121 (40.50%), Postives = 72/121 (59.50%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKER----SPETWRQVAINEAAMAVVAVN 352
            LVRPGRFDR I +P P + GR +IL+ H  K   A+DVD + +A  T G  GA+LAN+V VAA+    DG  ++T  DL  A   ++R M+  + +    S E+ +  A +E   A+VA++
Sbjct:  379 LVRPGRFDRHIVVPNPDVEGRRQILESHMSKVLKAEDVDLMIIARGTPGFSGADLANLVNVAALKAAMDGSKDVTMSDLEFA---KDRIMMGSERKSAVISDESRKLTAFHEGGHALVAIH 496          
BLAST of FC923320 vs. ExPASy Swiss-Prot
Match: FTSH4_ORYSJ (Cell division protease ftsH homolog 4, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH4 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 9.664e-16
Identity = 49/121 (40.50%), Postives = 72/121 (59.50%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKER----SPETWRQVAINEAAMAVVAVN 352
            LVRPGRFDR I +P P + GR +IL+ H  K   +DDVD + +A  T G  GA+LAN+V VAA+    DG   +T +DL  A   ++R M+  + +    S E+ +  A +E   A+VA++
Sbjct:  375 LVRPGRFDRHIVVPNPDVEGRRQILESHMLKVLKSDDVDLMIIARGTPGFSGADLANLVNVAALKAAMDGAKAVTMNDLEYA---KDRIMMGSERKSAVISDESRKLTAYHEGGHALVAIH 492          
BLAST of FC923320 vs. ExPASy Swiss-Prot
Match: FTSH_STRR6 (Cell division protease ftsH homolog OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=ftsH PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.649e-15
Identity = 46/117 (39.32%), Postives = 69/117 (58.97%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKERSPETWRQ-VAINEAAMAVVAV 349
            L+RPGRFDRK+ + +P + GR  ILKVHA+ KP+A+DVD   VA  T G VGA+L N++  AA+   R  ++ I   D+ +A      G   + +   +  R+ VA +EA   +V +
Sbjct:  342 LLRPGRFDRKVLVGRPDVKGREAILKVHAKNKPLAEDVDLKLVAQQTPGFVGADLENVLNEAALVAARRNKSIIDASDIDEAEDRVIAGPSKKDKTVSQKERELVAYHEAGHTIVGL 458          
BLAST of FC923320 vs. ExPASy Swiss-Prot
Match: FTSH_STRPN (Cell division protease ftsH homolog OS=Streptococcus pneumoniae GN=ftsH PE=3 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 1.649e-15
Identity = 46/117 (39.32%), Postives = 69/117 (58.97%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKERSPETWRQ-VAINEAAMAVVAV 349
            L+RPGRFDRK+ + +P + GR  ILKVHA+ KP+A+DVD   VA  T G VGA+L N++  AA+   R  ++ I   D+ +A      G   + +   +  R+ VA +EA   +V +
Sbjct:  342 LLRPGRFDRKVLVGRPDVKGREAILKVHAKNKPLAEDVDLKLVAQQTPGFVGADLENVLNEAALVAARRNKSIIDASDIDEAEDRVIAGPSKKDKTVSQKERELVAYHEAGHTIVGL 458          
The following BLAST results are available for this feature:
BLAST of FC923320 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
FTSH_AQUAE6.468e-2047.46Cell division protease ftsH homolog OS=Aquifex aeo... [more]
FTSH_HELFE3.924e-1742.02Cell division protease ftsH homolog OS=Helicobacte... [more]
FTSH_HELPY1.491e-1642.02Cell division protease ftsH homolog OS=Helicobacte... [more]
FTSH_HELPJ1.491e-1642.02Cell division protease ftsH homolog OS=Helicobacte... [more]
PSMR_AERPE5.666e-1645.74Proteasome-activating nucleotidase OS=Aeropyrum pe... [more]
FTSH5_ORYSJ7.400e-1640.50Cell division protease ftsH homolog 5, mitochondri... [more]
FTSH4_ARATH7.400e-1640.50Cell division protease ftsH homolog 4, mitochondri... [more]
FTSH4_ORYSJ9.664e-1640.50Cell division protease ftsH homolog 4, mitochondri... [more]
FTSH_STRR61.649e-1539.32Cell division protease ftsH homolog OS=Streptococc... [more]
FTSH_STRPN1.649e-1539.32Cell division protease ftsH homolog OS=Streptococc... [more]

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Properties
Property NameValue
Genbank descriptionC31703F10EF StrClemenN Citrus clementina cDNA clone C31703F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923320 ID=FC923320; Name=FC923320; organism=Citrus clementina; type=EST; length=563bp
CCTTGTGAGACCTGGACGGTTTGACCGTAAAATTTTCATCCCTAAACCTG
GCCTTATTGGTCGTATGGAAATTCTGAAGGTCCATGCTCGTAAGAAGCCA
ATGGCTGATGATGTAGACTATCTGGCTGTTGCTAGTATGACTGATGGAAT
GGTTGGTGCAGAACTAGCTAATATAGTTGAAGTTGCTGCTATTAACATGA
TGCGTGATGGAAGGACTGAGATTACAACGGATGACTTGCTTCAAGCTGCA
CAAATAGAAGAGAGAGGAATGCTAGATAGAAAGGAGAGGAGCCCTGAGAC
ATGGAGACAAGTCGCAATCAATGAAGCAGCAATGGCTGTTGTAGCTGTGA
ACTTCCCTGACCTTAAAAATATTGAGTTTGTATGGTCTTCACCCTTTATT
CCTTTTTACGTGTGTTCTCACATGTACTGTCACATACTTATTTCTTTATT
TTTTTGAGAAGCACATGGTTGTTAATTCTGCATGGCATCAATTGATAAAC
ATATCCACCTTCTTTCAGTTGGCTGGTTTTAGAGCTTTTTGTCACANGAT
GAAGTCTATTGCG
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