FC923321

Overview
NameFC923321
Unique NameFC923321
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14323 contig Ccv1_Contig14323:125..839. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923321 vs. ExPASy Swiss-Prot
Match: GOS11_ARATH (Golgi SNARE 11 protein OS=Arabidopsis thaliana GN=GOS11 PE=2 SV=1)

HSP 1 Score: 314.309 bits (804), Expect = 2.400e-86
Identity = 163/198 (82.32%), Postives = 178/198 (89.90%), Query Frame = 2
Query:   83 MDVPSSWDALRKQARKLEAQLDEQMHSYRKLVSSKGSTKVDAAENDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQALLKEHATINRSTGQMDSVISQAQATLGALAFQRSTFGGINSKLSNVSSRLPSVNQILSS*RGK 676
            MDVPSSWDALRKQARK+EAQLDEQMHSYR+LVS+K  +K D  E+DLE+GID LL+QLQQVN QMQ WVSSGGSEMVSHTLTRHQEILQDLTQEFYR RSSL+AKQEHASLLEDFREFDRTRLDLEDG GS EQAL+KEH  INR+T QMD VISQAQATLG L FQRSTFGGINSKLSNV+SRLP+VN IL++ + K
Sbjct:    1 MDVPSSWDALRKQARKIEAQLDEQMHSYRRLVSTKALSKSDGNESDLEAGIDLLLRQLQQVNAQMQAWVSSGGSEMVSHTLTRHQEILQDLTQEFYRHRSSLRAKQEHASLLEDFREFDRTRLDLEDGYGS-EQALIKEHMGINRNTAQMDGVISQAQATLGTLVFQRSTFGGINSKLSNVASRLPTVNTILAAIKRK 197          

HSP 2 Score: 26.5646 bits (57), Expect = 2.400e-86
Identity = 12/16 (75.00%), Postives = 15/16 (93.75%), Query Frame = 3
Query:  666 KEEKSMDTIILALVAS 713
            K +KSMDTIIL+LVA+
Sbjct:  195 KRKKSMDTIILSLVAA 210          
BLAST of FC923321 vs. ExPASy Swiss-Prot
Match: GOS12_ARATH (Golgi SNARE 12 protein OS=Arabidopsis thaliana GN=GOS12 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.803e-23
Identity = 72/216 (33.33%), Postives = 115/216 (53.24%), Query Frame = 2
Query:   77 SAMDVPSS-WDALRKQARKLEAQLDEQMHSYRKLVS--------SKGSTKVDAAEN--DLESGIDWLLKQLQQVNIQMQDWVSSGG-SEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLED----GVGSPEQALLKEHATINRSTGQMDSVISQAQATLGALAFQRSTFGGINSKLSNVSSRLPSVNQILSS*RGK 676
            S++D+  S W+ LR++ARK+E  LD ++ SY KL +          GS  V +  +   +E  I  LL++L  +N  M    +S   +  V+  L RH++IL + TQEF R++ ++ + +EHA LL   R+      D+ +    G  SP   +L+E A+I+ S   +D VI QAQAT   L  QRS F  +  K+ N+  + P +  +L S + K
Sbjct:    4 SSLDLQESGWEELRREARKIEGDLDVKLSSYAKLGARFTQGGYVDTGSPTVGSGRSWKSMEMEIQSLLEKLLDINDSMSRCAASAAPTTSVTQKLARHRDILHEYTQEFRRIKGNINSLREHAELLSSVRD------DISEYKASGSMSPGVQVLRERASIHGSISHIDDVIGQAQATRAVLGSQRSLFSDVQGKVKNLGDKFPVIRGLLGSIKRK 213          
BLAST of FC923321 vs. ExPASy Swiss-Prot
Match: GOSR1_HUMAN (Golgi SNAP receptor complex member 1 OS=Homo sapiens GN=GOSR1 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.523e-18
Identity = 67/219 (30.59%), Postives = 108/219 (49.32%), Query Frame = 2
Query:   80 AMDVPSSWDALRKQARKLEAQLDEQMHSYRKLVSSKGSTKVDAAENDLESG---------------------IDWLLKQLQQVNIQMQDWVSSGG----SEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQAL-LKEHATINRSTGQMDSVISQAQATLGALAFQRSTFGGINSKLSNVSSRLPSVNQIL 658
            A    S W+ LRKQAR+LE +LD ++ S+ KL +S   +       D  S                      I+ LL +L  VN +M ++ +S G    +  + HTL RH++ILQD T EF++ +++  A +E  +L+   R+ D        GV +    L LKEH  +  S   ++  IS A AT   +  QR     I+SK++ +++R P+VN ++
Sbjct:    2 AAGTSSYWEDLRKQARQLENELDLKLVSFSKLCTSYSHSSTRDGRRDRYSSDTTPLLNGSSQDRMFETMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFMAIRERENLMGSVRK-DIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLI 219          
BLAST of FC923321 vs. ExPASy Swiss-Prot
Match: GOSR1_BOVIN (Golgi SNAP receptor complex member 1 OS=Bos taurus GN=GOSR1 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.621e-18
Identity = 65/212 (30.66%), Postives = 105/212 (49.53%), Query Frame = 2
Query:  101 WDALRKQARKLEAQLDEQMHSYRKLVSSKGSTKVDAAENDLESG---------------------IDWLLKQLQQVNIQMQDWVSSGG----SEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQAL-LKEHATINRSTGQMDSVISQAQATLGALAFQRSTFGGINSKLSNVSSRLPSVNQIL 658
            W+ LRKQAR+LE +LD ++ S+ KL +S   +       D  S                      I+ LL +L  +N +M ++ SS G    +  + HTL RH++ILQD T EF++ +++  A +E  +L+   R+ D        GV +    L LKEH  +  S   ++  IS A AT   +  QR     I SK++ +++R P+VN ++
Sbjct:    9 WEDLRKQARQLENELDLKLVSFSKLCTSYSHSSARDGRRDRYSSDTTPLLNGSSQDRMFETMAIEIEQLLARLTGINDKMAEYTSSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFVAIRERENLMGSVRK-DIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMATKENMTSQRGMLKSIQSKMNTLANRFPAVNSLI 219          
BLAST of FC923321 vs. ExPASy Swiss-Prot
Match: GOSR1_CRIGR (Golgi SNAP receptor complex member 1 OS=Cricetulus griseus GN=GOSR1 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.587e-18
Identity = 65/212 (30.66%), Postives = 106/212 (50.00%), Query Frame = 2
Query:  101 WDALRKQARKLEAQLDEQMHSYRKLVSSKGSTKVDAAENDLESG---------------------IDWLLKQLQQVNIQMQDWVSSGG----SEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQAL-LKEHATINRSTGQMDSVISQAQATLGALAFQRSTFGGINSKLSNVSSRLPSVNQIL 658
            W+ LRKQAR+LE +LD ++ S+ KL +S   +       D  S                      I+ LL +L  VN +M ++ +S G    +  + HTL RH++ILQD T EF++ +++  A +E  +L+   R+ D        GV +    L LKEH  +  S   ++  IS A AT   +  QR     I+SK++ +++R P+VN ++
Sbjct:    9 WEDLRKQARQLENELDLKLVSFSKLCTSYSHSSARDGGRDRYSSDTTPLLNGSSQDRMFETMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFMAIRERENLMGSVRK-DIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLI 219          
BLAST of FC923321 vs. ExPASy Swiss-Prot
Match: GOSR1_RAT (Golgi SNAP receptor complex member 1 OS=Rattus norvegicus GN=Gosr1 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.635e-17
Identity = 65/212 (30.66%), Postives = 105/212 (49.53%), Query Frame = 2
Query:  101 WDALRKQARKLEAQLDEQMHSYRKLVSSKGSTKVDAAENDLESG---------------------IDWLLKQLQQVNIQMQDWVSSGG----SEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQAL-LKEHATINRSTGQMDSVISQAQATLGALAFQRSTFGGINSKLSNVSSRLPSVNQIL 658
            W+ LRKQAR+LE +LD ++ S+ KL +S   +       D  S                      I+ LL +L  VN +M ++  S G    +  + HTL RH++ILQD T EF++ +++  A +E  +L+   R+ D        GV +    L LKEH  +  S   ++  IS A AT   +  QR     I+SK++ +++R P+VN ++
Sbjct:    9 WEDLRKQARQLENELDLKLVSFSKLCTSYSHSSARDGGRDRYSSDTTPLLNGSSQDRMFETMAIEIEQLLARLTGVNDKMAEYTHSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFMAIRERENLMGSVRK-DIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLI 219          
BLAST of FC923321 vs. ExPASy Swiss-Prot
Match: GOSR1_PONAB (Golgi SNAP receptor complex member 1 OS=Pongo abelii GN=GOSR1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.635e-17
Identity = 63/210 (30.00%), Postives = 106/210 (50.48%), Query Frame = 2
Query:  101 WDALRKQARKLEAQLDEQMHSYRKLVSSKGSTKVDAAEND-------------------LESGIDWLLKQLQQVNIQMQDWVSSGG----SEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQAL-LKEHATINRSTGQMDSVISQAQATLGALAFQRSTFGGINSKLSNVSSRLPSVNQIL 658
            W+ LRKQAR+LE +LD ++ S+ KL +S   +       D                   +   I+ LL +L  VN +M ++ +S G    +  + HTL RH++ILQD T EF++ +++  + +E  +L+   R+ D        GV +    L LKEH  +  S   ++  IS A AT   +  QR     I+SK++ +++R P+VN ++
Sbjct:    9 WEDLRKQARQLENELDLKLVSFSKLCTSYSHSSTRDGRRDSSDTTPLLNGSSQDRMFETMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFMSIRERENLMGSVRK-DIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLI 217          
BLAST of FC923321 vs. ExPASy Swiss-Prot
Match: GOSR1_MOUSE (Golgi SNAP receptor complex member 1 OS=Mus musculus GN=Gosr1 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.116e-17
Identity = 66/212 (31.13%), Postives = 107/212 (50.47%), Query Frame = 2
Query:  101 WDALRKQARKLEAQLDEQMHSYRKLVSSK--------GSTKVDAAENDLESG-------------IDWLLKQLQQVNIQMQDWVSSGG----SEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQAL-LKEHATINRSTGQMDSVISQAQATLGALAFQRSTFGGINSKLSNVSSRLPSVNQIL 658
            W+ LRKQAR+LE +LD ++ S  KL +S         G  +  +    L +G             I+ LL +L  VN +M ++  S G    +  + HTL RH++ILQD T EF++ +++  A +E  +L+   R+ D        GV +    L LKEH  +  S   ++  IS A AT   +  QR     I+SK++ +++R P+VN ++
Sbjct:    9 WEDLRKQARQLENELDLKLVSSSKLCTSYSHSGSRDGGRDRYSSDTTPLLNGSSQDRMFETMAIEIEQLLARLTGVNDKMAEYTHSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFTAIRERENLMGSVRK-DIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLI 219          
BLAST of FC923321 vs. ExPASy Swiss-Prot
Match: GOSR1_DROME (Probable 28 kDa Golgi SNARE protein OS=Drosophila melanogaster GN=Gos28 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.168e-13
Identity = 60/208 (28.85%), Postives = 102/208 (49.04%), Query Frame = 2
Query:   95 SSWDALRKQARKLEAQLDEQMHSYRKLVS------SKGSTKVDAAE-------NDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSP-------EQALLKEHATINRSTGQMDSVISQAQATLGALAFQRSTFGGINSKLSNVSSRLPSVNQIL 658
            SS+D LRKQAR LE ++D ++ ++ K+ +      S G   VD +        + L   I+ +L++L  +N  M D  +SG + M  HTL RH+EILQ   QEF ++ ++   + E   LL            L    GSP        +  LKE   +N ++  ++  I+ A  T   L  QR  F  + ++ +++S+R P ++ ++
Sbjct:    4 SSYDVLRKQARSLENEIDLKLVAFSKIGAGSGGGGSGGLGGVDTSPLLGEHVFDSLSEEIEQMLEKLSSLNESMSDLPASGAAAM--HTLQRHREILQGYRQEFNKICANHTMRIEREELLRG--------SGLATSSGSPSISGLNRREMYLKESGHLNSASHLVNDQINIAIETRDHLHAQRQAFKRLQTRFNDISNRFPLISSLI 201          
The following BLAST results are available for this feature:
BLAST of FC923321 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
GOS11_ARATH2.400e-8682.32Golgi SNARE 11 protein OS=Arabidopsis thaliana GN=... [more]
GOS12_ARATH5.803e-2333.33Golgi SNARE 12 protein OS=Arabidopsis thaliana GN=... [more]
GOSR1_HUMAN2.523e-1830.59Golgi SNAP receptor complex member 1 OS=Homo sapie... [more]
GOSR1_BOVIN5.621e-1830.66Golgi SNAP receptor complex member 1 OS=Bos taurus... [more]
GOSR1_CRIGR9.587e-1830.66Golgi SNAP receptor complex member 1 OS=Cricetulus... [more]
GOSR1_RAT1.635e-1730.66Golgi SNAP receptor complex member 1 OS=Rattus nor... [more]
GOSR1_PONAB1.635e-1730.00Golgi SNAP receptor complex member 1 OS=Pongo abel... [more]
GOSR1_MOUSE8.116e-1731.13Golgi SNAP receptor complex member 1 OS=Mus muscul... [more]
GOSR1_DROME4.168e-1328.85Probable 28 kDa Golgi SNARE protein OS=Drosophila ... [more]
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Properties
Property NameValue
Genbank descriptionC31703F11EF StrClemenN Citrus clementina cDNA clone C31703F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923321 ID=FC923321; Name=FC923321; organism=Citrus clementina; type=EST; length=715bp
GGAAAAAATCACGCAATTGAATTGAAGATCAATTTTTAATTTCATTTTTG
GTTGACAGATCGATCTGGATTTGGTTTCAGCGATGGATGTGCCTAGCTCA
TGGGACGCTTTACGCAAACAGGCGAGAAAGCTGGAAGCACAGTTGGATGA
GCAGATGCATTCCTATCGTAAGTTGGTTTCCTCTAAGGGTTCTACAAAGG
TTGACGCCGCAGAGAATGATCTTGAATCTGGGATAGATTGGTTGCTGAAA
CAGCTACAACAAGTAAATATACAAATGCAAGATTGGGTATCGTCAGGAGG
ATCCGAAATGGTTTCACATACTTTGACTCGTCATCAGGAAATTCTTCAAG
ATCTTACTCAGGAGTTTTATCGTCTCCGCTCCAGCCTTAAAGCTAAGCAA
GAGCATGCTTCGCTACTTGAGGACTTTAGGGAGTTTGATCGGACCAGATT
AGATTTAGAAGATGGTGTTGGTTCTCCAGAGCAAGCTTTACTTAAAGAAC
ACGCGACTATTAATCGAAGTACAGGACAGATGGATTCTGTGATTTCTCAA
GCTCAAGCAACTCTCGGTGCTCTGGCCTTTCAACGTTCAACATTTGGGGG
CATCAATTCAAAGCTCAGCAATGTTAGCAGTCGACTCCCATCGGTAAATC
AAATCCTCTCATCATAAAGAGGAAAAGTCTATGGACACTATCATACTTGC
CCTTGTAGCATCTGT
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