FC923322

Overview
NameFC923322
Unique NameFC923322
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14714 contig Ccv1_Contig14714:68..744. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923322 vs. ExPASy Swiss-Prot
Match: FCSB_DICDI (Fatty acyl-CoA synthetase B OS=Dictyostelium discoideum GN=fcsB PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 7.277e-57
Identity = 105/222 (47.30%), Postives = 148/222 (66.67%), Query Frame = 3
Query:    6 KQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGEALR 671
            KQ+ GG+VR+ILSG+APL+   E FLRVV C  VLQGYG +E C G      ++ S +GT+GPP  + ++ L  VPE+ YD+      GEVC++G ++ SGYYK E+ T+E   DGWFHTGDIG W  DGSL I+DRKKNIFKLSQGEYVAVE +E I      ++ V +YG+S +S ++AI++P+ ++   WA     + D K +C+N    + +L + ++
Sbjct:  396 KQALGGKVRVILSGSAPLSFDTEVFLRVVMCCCVLQGYGASEGCGGDACKRLDDES-VGTIGPPFASNEIKLVDVPELGYDSNGEVQTGEVCLRGPSISSGYYKDEEKTREEFKDGWFHTGDIGRWNRDGSLSIVDRKKNIFKLSQGEYVAVEKIETIVVKSEYVEQVCIYGDSQKSCVIAIIHPHPESCSEWAGSKKTDKDIKEICKNQDFIKVVLDDIIK 616          
BLAST of FC923322 vs. ExPASy Swiss-Prot
Match: ACSL1_MOUSE (Long-chain-fatty-acid--CoA ligase 1 OS=Mus musculus GN=Acsl1 PE=1 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.855e-52
Identity = 108/224 (48.21%), Postives = 147/224 (65.62%), Query Frame = 3
Query:    6 KQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGEALRV 674
            + S GG+VRL+++GAAP++  V TFLR        +GYG TE  AG  +SLP + +  G VG P+P   V L  V EM Y  L+S   GEVCVKG+ VF GY K    T E +  DGW HTGDIG+W P+G+LKIIDRKK+IFKL+QGEY+A E +ENIY    A+  V+V+G S ++FL+A+V P+ ++L  WA + G+ G F+ LC N    + IL + L++
Sbjct:  422 QSSLGGKVRLMITGAAPVSATVLTFLRTALGCQFYEGYGQTECTAGCCLSLPGDWTA-GHVGAPMPCNYVKLVDVEEMNY--LASKGEGEVCVKGANVFKGYLKDPARTAEALDKDGWLHTGDIGKWLPNGTLKIIDRKKHIFKLAQGEYIAPEKIENIYLRSEAVAQVFVHGESLQAFLIAVVVPDVESLPSWAQKRGLQGSFEELCRNKDINKAILDDLLKL 642          
BLAST of FC923322 vs. ExPASy Swiss-Prot
Match: ACSL1_CAVPO (Long-chain-fatty-acid--CoA ligase 1 OS=Cavia porcellus GN=ACSL1 PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.051e-51
Identity = 105/224 (46.88%), Postives = 145/224 (64.73%), Query Frame = 3
Query:    6 KQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGEALRV 674
            + S GG+VRL+++GAAP++  V TFLR        +GYG TE  AG  +S+P + +  G VG P+P   + L  V EM Y  +++   GEVCVKG  VF GY K    T E +  DGW HTGDIG+W P+G+LKIIDRKK+IFKL+QGEY+A E +ENIY     +  V+V+G S ++FL+AIV P+ ++L  WA + G  G F+ LC N   K+ IL + +R+
Sbjct:  421 QSSLGGKVRLMVTGAAPVSATVLTFLRAALGCQFYEGYGQTECTAGCSLSVPGDWTA-GHVGAPMPCNFIKLVDVEEMNY--MAAMGEGEVCVKGPNVFKGYLKDPAKTAEALDKDGWLHTGDIGKWLPNGTLKIIDRKKHIFKLAQGEYIAPEKIENIYVRSEPVAQVFVHGESLQAFLIAIVVPDAESLASWARKRGFEGSFEELCRNKDVKKAILEDMVRI 641          
BLAST of FC923322 vs. ExPASy Swiss-Prot
Match: ACSL1_RAT (Long-chain-fatty-acid--CoA ligase 1 OS=Rattus norvegicus GN=Acsl1 PE=1 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 7.792e-51
Identity = 105/224 (46.88%), Postives = 143/224 (63.84%), Query Frame = 3
Query:    6 KQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGEALRV 674
            + S GG+VRL+++GAAP++  V TFLR        +GYG TE  AG  +SLP + +  G VG P+P   + L  V +M Y A      GEVCVKG+ VF GY K    T E +  DGW HTGDIG+W P+G+LKIIDRKK+IFKL+QGEY+A E +ENIY    A+  V+V+G S ++FL+AIV P+ + L  WA + G  G F+ LC N    + IL + +++
Sbjct:  422 QSSLGGKVRLMITGAAPVSATVLTFLRAALGCQFYEGYGQTECTAGCCLSLPGDWTA-GHVGAPMPCNYIKLVDVEDMNYQAAKG--EGEVCVKGANVFKGYLKDPARTAEALDKDGWLHTGDIGKWLPNGTLKIIDRKKHIFKLAQGEYIAPEKIENIYLRSEAVAQVFVHGESLQAFLIAIVVPDVEILPSWAQKRGFQGSFEELCRNKDINKAILEDMVKL 642          
BLAST of FC923322 vs. ExPASy Swiss-Prot
Match: ACSL6_RAT (Long-chain-fatty-acid--CoA ligase 6 OS=Rattus norvegicus GN=Acsl6 PE=1 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.329e-50
Identity = 102/218 (46.79%), Postives = 142/218 (65.14%), Query Frame = 3
Query:   12 SFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGE 662
            S GG VR+I++GAAP +P V  FLR      V +GYG TE  AG   + P + +  G VG P+P   + L    E+ Y   +S   GE+CVKG  VF GY K ED TKE +  DGW HTGDIG+W P+G+LKIIDRKK+IFKL+QGEYVA E +ENIY     +  ++V+G+S ++FLV IV P+ + +  WA + G+ G+++ LC++ + K+ IL +
Sbjct:  423 SLGGHVRMIVTGAAPASPTVLGFLRAALGCQVYEGYGQTECTAGCTFTTPGDWTS-GHVGAPLPCNHIKLVDAEELNY--WTSKGEGEICVKGPNVFKGYLKDEDRTKEALDSDGWLHTGDIGKWLPEGTLKIIDRKKHIFKLAQGEYVAPEKIENIYIRSEPVAQIYVHGDSLKAFLVGIVVPDPEVMPCWAQKKGIEGNYQELCKSKELKKAILDD 637          
BLAST of FC923322 vs. ExPASy Swiss-Prot
Match: ACSL5_RAT (Long-chain-fatty-acid--CoA ligase 5 OS=Rattus norvegicus GN=Acsl5 PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.736e-50
Identity = 104/224 (46.43%), Postives = 148/224 (66.07%), Query Frame = 3
Query:    6 KQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGEALRV 674
            + S GG+VRL+++GAAP++  V TF R      V + YG TE  AG  ++ P + +  G VG PV    V LE V +M Y ++++   GE+C+KG+ VF GY K  + T+EV+  DGW HTGDIG W P+G+LKIIDRKKNIFKL+QGEY+A E +EN+Y+    I  V+V+G S  SFL+ +V P+ ++L  +AA+ GV G F+ LC+N   K+ IL +  +V
Sbjct:  406 QSSLGGKVRLMITGAAPISTPVLTFFRAAMGCWVFEAYGQTECTAGCSITSPGDWTA-GHVGTPVSCNFVKLEDVADMNYFSVNN--EGEICIKGNNVFKGYLKDPEKTQEVLDKDGWLHTGDIGRWLPNGTLKIIDRKKNIFKLAQGEYIAPEKIENVYSRSRPILQVFVHGESLRSFLIGVVVPDPESLPSFAAKIGVKGSFEELCQNQCVKKAILEDLQKV 626          
BLAST of FC923322 vs. ExPASy Swiss-Prot
Match: ACSL1_HUMAN (Long-chain-fatty-acid--CoA ligase 1 OS=Homo sapiens GN=ACSL1 PE=1 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.736e-50
Identity = 105/224 (46.88%), Postives = 144/224 (64.29%), Query Frame = 3
Query:    6 KQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGEALRV 674
            + S GGRVRL+++GAAP++  V TFLR        +GYG TE  AG  +++P + +  G VG P+P   + L  V EM Y  +++   GEVCVKG  VF GY K    T E +  DGW HTGDIG+W P+G+LKIIDRKK+IFKL+QGEY+A E +ENIY     +  V+V+G S ++FL+AIV P+ + L  WA + G  G F+ LC N   K+ IL + +R+
Sbjct:  421 QSSLGGRVRLMVTGAAPVSATVLTFLRAALGCQFYEGYGQTECTAGCCLTMPGDWTA-GHVGAPMPCNLIKLVDVEEMNY--MAAEGEGEVCVKGPNVFQGYLKDPAKTAEALDKDGWLHTGDIGKWLPNGTLKIIDRKKHIFKLAQGEYIAPEKIENIYMRSEPVAQVFVHGESLQAFLIAIVVPDVETLCSWAQKRGFEGSFEELCRNKDVKKAILEDMVRL 641          
BLAST of FC923322 vs. ExPASy Swiss-Prot
Match: ACSL5_MOUSE (Long-chain-fatty-acid--CoA ligase 5 OS=Mus musculus GN=Acsl5 PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.267e-50
Identity = 102/222 (45.95%), Postives = 146/222 (65.77%), Query Frame = 3
Query:   12 SFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGEALRV 674
            S GG+VRL+++GAAP++  V TF R      V + YG TE   G  ++ P + +  G VG PV    V LE V +M Y ++++   GE+C+KG+ VF GY K  + T+EV+  DGW HTGDIG W P+G+LKI+DRKKNIFKL+QGEY+A E +EN+Y+    +  V+V+G S  SFL+ +V P+ D+L  +AA+ GV G F+ LC+N   KE IL +  ++
Sbjct:  408 SLGGKVRLMITGAAPISTPVLTFFRAAMGCWVFEAYGQTECTGGCSITSPGDWTA-GHVGTPVACNFVKLEDVADMNYFSVNN--EGEICIKGNNVFKGYLKDPEKTQEVLDKDGWLHTGDIGRWLPNGTLKIVDRKKNIFKLAQGEYIAPEKIENVYSRSRPVLQVFVHGESLRSFLIGVVVPDPDSLPSFAAKIGVKGSFEELCKNQCVKEAILEDLQKI 626          
BLAST of FC923322 vs. ExPASy Swiss-Prot
Match: ACSL6_MOUSE (Long-chain-fatty-acid--CoA ligase 6 OS=Mus musculus GN=Acsl6 PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.470e-49
Identity = 101/218 (46.33%), Postives = 137/218 (62.84%), Query Frame = 3
Query:   12 SFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGE 662
            S GG VR+I++GAAP +P V  FLR      V +GYG TE  AG   + P + +  G VG P+P   + L    E+ Y        GE+CVKG  VF GY K ED TKE +  DGW HTGDIG+W P+G+LKIIDRKK+IFKL+QGEYVA E +ENIY     +  ++V+G+S ++FLV IV P+ + +  WA + G+ G ++ LC   + K+ IL +
Sbjct:  423 SLGGHVRMIVTGAAPASPTVLGFLRAALGCQVYEGYGQTECTAGCTFTTPGDWTS-GHVGAPLPCNHIKLVDAEELNYWTCKG--EGEICVKGPNVFKGYLKDEDRTKEALDSDGWLHTGDIGKWLPEGTLKIIDRKKHIFKLAQGEYVAPEKIENIYIRSEPVAQIYVHGDSLKAFLVGIVVPDPEVMPSWAQKKGIEGTYQELCMKKELKKAILDD 637          
BLAST of FC923322 vs. ExPASy Swiss-Prot
Match: ACSL6_HUMAN (Long-chain-fatty-acid--CoA ligase 6 OS=Homo sapiens GN=ACSL6 PE=2 SV=4)

HSP 1 Score: 196.052 bits (497), Expect = 1.470e-49
Identity = 103/222 (46.40%), Postives = 139/222 (62.61%), Query Frame = 3
Query:   12 SFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGEALRV 674
            S GG VR+I++GAAP +P V  FLR      V +GYG TE  AG   + P + +  G VG P+P   + L  V E+ Y A      GE+CV+G  VF GY K  D TKE +  DGW HTGDIG+W P G+LKIIDRKK+IFKL+QGEYVA E +ENIY     +  ++V+G+S ++FLV IV P+ + +  WA + G+ G +  LC N   K+ IL + +R+
Sbjct:  423 SLGGCVRMIVTGAAPASPTVLGFLRAALGCQVYEGYGQTECTAGCTFTTPGDWTS-GHVGAPLPCNHIKLVDVEELNYWACKG--EGEICVRGPNVFKGYLKDPDRTKEALDSDGWLHTGDIGKWLPAGTLKIIDRKKHIFKLAQGEYVAPEKIENIYIRSQPVAQIYVHGDSLKAFLVGIVVPDPEVMPSWAQKRGIEGTYADLCTNKDLKKAILEDMVRL 641          
The following BLAST results are available for this feature:
BLAST of FC923322 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 131
Match NameE-valueIdentityDescription
FCSB_DICDI7.277e-5747.30Fatty acyl-CoA synthetase B OS=Dictyostelium disco... [more]
ACSL1_MOUSE1.855e-5248.21Long-chain-fatty-acid--CoA ligase 1 OS=Mus musculu... [more]
ACSL1_CAVPO2.051e-5146.88Long-chain-fatty-acid--CoA ligase 1 OS=Cavia porce... [more]
ACSL1_RAT7.792e-5146.88Long-chain-fatty-acid--CoA ligase 1 OS=Rattus norv... [more]
ACSL6_RAT1.329e-5046.79Long-chain-fatty-acid--CoA ligase 6 OS=Rattus norv... [more]
ACSL5_RAT1.736e-5046.43Long-chain-fatty-acid--CoA ligase 5 OS=Rattus norv... [more]
ACSL1_HUMAN1.736e-5046.88Long-chain-fatty-acid--CoA ligase 1 OS=Homo sapien... [more]
ACSL5_MOUSE2.267e-5045.95Long-chain-fatty-acid--CoA ligase 5 OS=Mus musculu... [more]
ACSL6_MOUSE1.470e-4946.33Long-chain-fatty-acid--CoA ligase 6 OS=Mus musculu... [more]
ACSL6_HUMAN1.470e-4946.40Long-chain-fatty-acid--CoA ligase 6 OS=Homo sapien... [more]

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Properties
Property NameValue
Genbank descriptionC31703F12EF StrClemenN Citrus clementina cDNA clone C31703F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923322 ID=FC923322; Name=FC923322; organism=Citrus clementina; type=EST; length=677bp
AAGGTAAGCAATCATTTGGTGGGCGTGTACGGCTTATTCTGTCTGGAGCA
GCACCCCTTACTCCTCATGTAGAAACCTTCCTGCGGGTGGTGGCATGTGC
TCATGTCCTGCAGGGATATGGTCTGACTGAAACTTGTGCCGGGACTTTTG
TGTCACTGCCAAATGAGATGTCAATGATTGGTACTGTGGGTCCTCCAGTA
CCAAATGTGGATGTATGCCTAGAATCTGTTCCTGAAATGGAATATGATGC
CCTCTCAAGTACACCACGTGGAGAAGTTTGTGTGAAGGGGAGTACTGTGT
TTTCAGGGTACTATAAACGTGAAGACCTCACGAAAGAAGTCATGGTTGAT
GGGTGGTTCCATACAGGTGATATTGGTGAGTGGCAACCTGATGGAAGCTT
GAAAATTATTGACCGTAAGAAAAACATTTTCAAGCTTTCACAGGGAGAAT
ATGTTGCTGTTGAAAACTTGGAGAATATTTATGCTCTTGTATCTGCTATT
GATTCGGTATGGGTGTATGGGAACAGCTTTGAGTCCTTCCTTGTTGCCAT
TGTCAACCCCAACAAGGACGCACTTGAAAGATGGGCAGCTGAAAATGGTG
TAAATGGAGACTTCAAGTCGCTCTGTGAAAATCCCAAGGCAAAAGAATTC
ATACTCGGAGAAGCTCTCAGAGTTGCT
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