FC923323

Overview
NameFC923323
Unique NameFC923323
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14438 contig Ccv1_Contig14438:1..707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923323 vs. ExPASy Swiss-Prot
Match: ARF5_ARATH (Probable ADP-ribosylation factor At2g18390 OS=Arabidopsis thaliana GN=At2g18390 PE=2 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.306e-59
Identity = 115/140 (82.14%), Postives = 120/140 (85.71%), Query Frame = 2
Query:  272 MGLLSXXXXXXXXXXXXXXLMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILSNKQDINGTLTPQRLLK 691
            MGLLS              LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTI YQKYTLNIWDVGGQ+TIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERL+G+SLLIL+NKQDI G LTP  + K
Sbjct:    1 MGLLSIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTIIYQKYTLNIWDVGGQKTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLAGSSLLILANKQDIQGALTPDEIGK 140          
BLAST of FC923323 vs. ExPASy Swiss-Prot
Match: ARL2_DICDI (ADP-ribosylation factor-like protein 2 OS=Dictyostelium discoideum GN=arl2 PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.392e-45
Identity = 80/140 (57.14%), Postives = 108/140 (77.14%), Query Frame = 2
Query:  272 MGLLSXXXXXXXXXXXXXXLMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILSNKQDINGTLTPQRLLK 691
            MGLL+              LM+GLDN+GKTTI+ K NGED S ISPTLGFNI+T+ Y++Y LNIWD+GGQ+T+RSYWRNY+E+ D ++WV+DSSD+RR+DDCK EL  LL+EE+ +GAS L+ +NKQD++G +T + + K
Sbjct:    1 MGLLTVLKKLKQKEKELRILMLGLDNAGKTTILKKFNGEDISTISPTLGFNIQTLMYKEYKLNIWDIGGQKTLRSYWRNYYEENDAVIWVIDSSDIRRIDDCKFELKKLLEEEKFAGASFLVFANKQDLDGAMTSEEISK 140          
BLAST of FC923323 vs. ExPASy Swiss-Prot
Match: ARL2_BOVIN (ADP-ribosylation factor-like protein 2 OS=Bos taurus GN=ARL2 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.819e-43
Identity = 82/134 (61.19%), Postives = 103/134 (76.87%), Query Frame = 2
Query:  272 MGLLSXXXXXXXXXXXXXXLMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILSNKQDINGTLT 673
            MGLL+              LM+GLDN+GKTTI+ K NGED   ISPTLGFNIKT+ ++ + LNIWDVGGQ+++RSYWRNYFE TDGL+WVVDS+D +R+ DC+ EL NLL EERL+GA+LLI +NKQD+ G L+
Sbjct:    1 MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQNLLVEERLAGATLLIFANKQDLPGALS 134          
BLAST of FC923323 vs. ExPASy Swiss-Prot
Match: ARL2_RAT (ADP-ribosylation factor-like protein 2 OS=Rattus norvegicus GN=Arl2 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.111e-42
Identity = 81/134 (60.45%), Postives = 103/134 (76.87%), Query Frame = 2
Query:  272 MGLLSXXXXXXXXXXXXXXLMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILSNKQDINGTLT 673
            MGLL+              LM+GLDN+GKTTI+ K NGED   ISPTLGFNIKT+ ++ + LNIWDVGGQ+++RSYWRNYFE TDGL+WVVDS+D +R+ DC+ EL +LL EERL+GA+LLI +NKQD+ G L+
Sbjct:    1 MGLLTILKKMKQKERDVRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS 134          
BLAST of FC923323 vs. ExPASy Swiss-Prot
Match: ARL2_MOUSE (ADP-ribosylation factor-like protein 2 OS=Mus musculus GN=Arl2 PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.111e-42
Identity = 81/134 (60.45%), Postives = 103/134 (76.87%), Query Frame = 2
Query:  272 MGLLSXXXXXXXXXXXXXXLMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILSNKQDINGTLT 673
            MGLL+              LM+GLDN+GKTTI+ K NGED   ISPTLGFNIKT+ ++ + LNIWDVGGQ+++RSYWRNYFE TDGL+WVVDS+D +R+ DC+ EL +LL EERL+GA+LLI +NKQD+ G L+
Sbjct:    1 MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS 134          
BLAST of FC923323 vs. ExPASy Swiss-Prot
Match: ARL2_HUMAN (ADP-ribosylation factor-like protein 2 OS=Homo sapiens GN=ARL2 PE=1 SV=4)

HSP 1 Score: 172.94 bits (437), Expect = 1.451e-42
Identity = 81/134 (60.45%), Postives = 103/134 (76.87%), Query Frame = 2
Query:  272 MGLLSXXXXXXXXXXXXXXLMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILSNKQDINGTLT 673
            MGLL+              LM+GLDN+GKTTI+ K NGED   ISPTLGFNIKT+ ++ + LNIWDVGGQ+++RSYWRNYFE TDGL+WVVDS+D +R+ DC+ EL +LL EERL+GA+LLI +NKQD+ G L+
Sbjct:    1 MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS 134          
BLAST of FC923323 vs. ExPASy Swiss-Prot
Match: ARL2_DROME (ADP-ribosylation factor-like protein 2 OS=Drosophila melanogaster GN=Arf84F PE=2 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 7.963e-41
Identity = 79/138 (57.25%), Postives = 100/138 (72.46%), Query Frame = 2
Query:  272 MGLLSXXXXXXXXXXXXXXLMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILSNKQDINGTLTPQRL 685
            MG L+              L++GLDN+GKTTI+ + NGE    ISPTLGFNIKT+ +  YTLN+WDVGGQ+++RSYWRNYFE TDGLVWVVDS+D  RL+ C  EL  LL+EERL+GA+LL+L NKQD+ G L+   +
Sbjct:    1 MGFLTVLKKMRQKEREMRILLLGLDNAGKTTILKRFNGEPIDTISPTLGFNIKTLEHNGYTLNMWDVGGQKSLRSYWRNYFESTDGLVWVVDSADRMRLESCGQELQVLLQEERLAGATLLVLCNKQDLPGALSSNEI 138          
BLAST of FC923323 vs. ExPASy Swiss-Prot
Match: ARL2_CAEBR (ADP-ribosylation factor-like protein 2 OS=Caenorhabditis briggsae GN=evl-20.1 PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 6.976e-37
Identity = 72/133 (54.14%), Postives = 93/133 (69.92%), Query Frame = 2
Query:  272 MGLLSXXXXXXXXXXXXXXLMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILSNKQDINGTL 670
            MG L               L++GLDN+GKTT++ K   E T  I PTLGF+IKT+ ++ + LN+WDVGGQ+++RSYW+NYFE TD L+WVVDSSD  RL  C  EL  LL+EERLSGASLL+L+NK D+ G +
Sbjct:    1 MGFLKILRKQRAREREMRILILGLDNAGKTTLMKKFLDEPTDTIEPTLGFDIKTVHFKDFQLNLWDVGGQKSLRSYWKNYFESTDALIWVVDSSDRERLTQCSEELKKLLQEERLSGASLLVLANKSDLPGAI 133          
BLAST of FC923323 vs. ExPASy Swiss-Prot
Match: ARL2_CAEEL (ADP-ribosylation factor-like protein 2 OS=Caenorhabditis elegans GN=evl-20 PE=2 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 7.713e-36
Identity = 71/133 (53.38%), Postives = 92/133 (69.17%), Query Frame = 2
Query:  272 MGLLSXXXXXXXXXXXXXXLMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILSNKQDINGTL 670
            MG L               L++GLDN+GKTT++ K   E T  I PTLGF+IKT+ ++ + LN+WDVGGQ+++RSYW+NYFE TD L+WVVDSSD  RL  C  EL  LL EERL+GASLL+L+NK D+ G +
Sbjct:    1 MGFLKILRKQRAREREMRILILGLDNAGKTTLMKKFLDEPTDTIEPTLGFDIKTVHFKDFQLNLWDVGGQKSLRSYWKNYFESTDALIWVVDSSDRERLLQCSEELKKLLGEERLAGASLLVLANKSDLPGAI 133          
BLAST of FC923323 vs. ExPASy Swiss-Prot
Match: ARL3_XENLA (ADP-ribosylation factor-like protein 3 OS=Xenopus laevis GN=arl3 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.966e-31
Identity = 61/110 (55.45%), Postives = 85/110 (77.27%), Query Frame = 2
Query:  329 LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILSNKQDI 658
            L++GLDN+GKTT++ ++  ED S I+PT GFNIK++  Q + LN+WD+GGQR IR YWRNYFE TD L++V+DS+D +R ++   EL  LL EE+LSG  +LI +NKQD+
Sbjct:   21 LLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRNYFENTDVLIYVIDSADRKRFEETGQELAELLDEEKLSGVPVLIFANKQDL 130          
The following BLAST results are available for this feature:
BLAST of FC923323 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
ARF5_ARATH1.306e-5982.14Probable ADP-ribosylation factor At2g18390 OS=Arab... [more]
ARL2_DICDI2.392e-4557.14ADP-ribosylation factor-like protein 2 OS=Dictyost... [more]
ARL2_BOVIN3.819e-4361.19ADP-ribosylation factor-like protein 2 OS=Bos taur... [more]
ARL2_RAT1.111e-4260.45ADP-ribosylation factor-like protein 2 OS=Rattus n... [more]
ARL2_MOUSE1.111e-4260.45ADP-ribosylation factor-like protein 2 OS=Mus musc... [more]
ARL2_HUMAN1.451e-4260.45ADP-ribosylation factor-like protein 2 OS=Homo sap... [more]
ARL2_DROME7.963e-4157.25ADP-ribosylation factor-like protein 2 OS=Drosophi... [more]
ARL2_CAEBR6.976e-3754.14ADP-ribosylation factor-like protein 2 OS=Caenorha... [more]
ARL2_CAEEL7.713e-3653.38ADP-ribosylation factor-like protein 2 OS=Caenorha... [more]
ARL3_XENLA1.966e-3155.45ADP-ribosylation factor-like protein 3 OS=Xenopus ... [more]

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Properties
Property NameValue
Genbank descriptionC31703G02EF StrClemenN Citrus clementina cDNA clone C31703G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923323 ID=FC923323; Name=FC923323; organism=Citrus clementina; type=EST; length=707bp
GTAACAACGACGTCGTTTTCGACAGATCGAAATCGAAAATACACCATATT
GCTGTTTTCTTCGCGCTCCACAACCACGGCGCAAAGCACAGACGCACTCA
CTCACACACACCGCACGACGCCCCCGCTGTCAACTCCGTTCAGGTACACC
GGCGTTGCAGCTTCTTGTCGTTCCAGTCTTCCAGCTGCTGACATCTTGAG
CCGTTCACTTCCGATCCAGCTGCTGCCGTCGCTGCCTCCTTCTTCGTTCG
CCGTCGTCAGCCGCACAAGAAATGGGGCTCCTCAGCATCATAAGGAAGAT
CAAGAAAAAAGAGAAGGAAATGCGCATTCTTATGGTGGGTCTTGATAATT
CTGGGAAGACCACTATTGTTTTGAAGATAAACGGAGAAGATACTAGCGTT
ATCAGTCCTACACTTGGATTCAATATCAAAACCATTACTTACCAAAAGTA
CACTTTAAACATATGGGATGTAGGAGGCCAAAGGACTATAAGATCATATT
GGAGGAACTACTTTGAGCAAACTGATGGCTTGGTGTGGGTGGTTGATAGT
TCCGATCTTAGAAGACTGGATGATTGCAAAATGGAACTAGACAATCTTTT
AAAGGAAGAGAGGCTATCAGGGGCATCCTTACTGATTCTNAGCAATAAGC
AGGACATCAATGGTACTCTTACCCCACAGAGATTGCTAAAGTCTGAACTT
GGAAGCA
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