FC923344

Overview
NameFC923344
Unique NameFC923344
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length228
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15055 contig Ccv1_Contig15055:422..649. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923344 vs. ExPASy Swiss-Prot
Match: TRXB1_ARATH (Thioredoxin reductase 1 OS=Arabidopsis thaliana GN=NTR1 PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 7.085e-25
Identity = 56/77 (72.73%), Postives = 64/77 (83.12%), Query Frame = 3
Query:    9 NFRKHRFKVFTDSKSVLADTVIVATGAVAKKLQFPGSD----AFWNRGISACAVCDGAAPIFRDKPLAVIGGGESAM 227
            +F    FK+FTDSK++LAD VI+ATGAVAK+L F GS      FWNRGISACAVCDGAAPIFR+KPLAVIGGG+SAM
Sbjct:   96 DFSSKPFKLFTDSKAILADAVILATGAVAKRLSFVGSGEASGGFWNRGISACAVCDGAAPIFRNKPLAVIGGGDSAM 172          
BLAST of FC923344 vs. ExPASy Swiss-Prot
Match: TRXB2_ARATH (Thioredoxin reductase 2 OS=Arabidopsis thaliana GN=NTR2 PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 2.692e-24
Identity = 54/77 (70.13%), Postives = 64/77 (83.12%), Query Frame = 3
Query:    9 NFRKHRFKVFTDSKSVLADTVIVATGAVAKKLQFPGSD----AFWNRGISACAVCDGAAPIFRDKPLAVIGGGESAM 227
            +F    FK+FTDS++VLAD+VI++TGAVAK+L F GS      FWNRGISACAVCDGAAPIFR+KPL VIGGG+SAM
Sbjct:  146 DFSSKPFKLFTDSRTVLADSVIISTGAVAKRLSFTGSGEGNGGFWNRGISACAVCDGAAPIFRNKPLVVIGGGDSAM 222          
BLAST of FC923344 vs. ExPASy Swiss-Prot
Match: TRXB_DEBHA (Thioredoxin reductase OS=Debaryomyces hansenii GN=TRR1 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.997e-19
Identity = 42/70 (60.00%), Postives = 55/70 (78.57%), Query Frame = 3
Query:   27 FKVFT----DSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGESA 224
            FK++T    DS+ +  D V++ATGA AK++  PG D +W +GISACAVCDGA PIFR+KPLAV+GGG+SA
Sbjct:   97 FKLWTEWNEDSEPITTDAVVIATGASAKRMHLPGEDTYWQQGISACAVCDGAVPIFRNKPLAVVGGGDSA 166          
BLAST of FC923344 vs. ExPASy Swiss-Prot
Match: TRXB_CANGA (Thioredoxin reductase OS=Candida glabrata GN=TRR1 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.909e-19
Identity = 41/70 (58.57%), Postives = 54/70 (77.14%), Query Frame = 3
Query:   27 FKVFT----DSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGESA 224
            FK++T    D + +  D +++ATGA AK+L  PG + +W +GISACAVCDGA PIFR+KPLAVIGGG+SA
Sbjct:   97 FKLWTEFNEDGEPITTDAIVIATGASAKRLHIPGEETYWQQGISACAVCDGAVPIFRNKPLAVIGGGDSA 166          
BLAST of FC923344 vs. ExPASy Swiss-Prot
Match: TRXB1_YEAST (Thioredoxin reductase 1 OS=Saccharomyces cerevisiae GN=TRR1 PE=1 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 9.909e-19
Identity = 42/70 (60.00%), Postives = 55/70 (78.57%), Query Frame = 3
Query:   27 FKVFT----DSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGESA 224
            FK++T    D++ V  D +I+ATGA AK++  PG + +W +GISACAVCDGA PIFR+KPLAVIGGG+SA
Sbjct:   97 FKLWTEFNEDAEPVTTDAIILATGASAKRMHLPGEETYWQKGISACAVCDGAVPIFRNKPLAVIGGGDSA 166          
BLAST of FC923344 vs. ExPASy Swiss-Prot
Match: TRXB_YARLI (Thioredoxin reductase OS=Yarrowia lipolytica GN=TRR1 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.207e-18
Identity = 43/70 (61.43%), Postives = 53/70 (75.71%), Query Frame = 3
Query:   27 FKVFT----DSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGESA 224
            FK +T    D +   AD +I+ATGA AK+L  PG D +W +GISACAVCDGA PIFR+KPLAV+GGG+SA
Sbjct:   97 FKYWTEFNEDEEPHTADAIILATGASAKRLSLPGEDQYWQQGISACAVCDGAVPIFRNKPLAVVGGGDSA 166          
BLAST of FC923344 vs. ExPASy Swiss-Prot
Match: TRXB_ASHGO (Thioredoxin reductase OS=Ashbya gossypii GN=TRR1 PE=3 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 2.207e-18
Identity = 42/70 (60.00%), Postives = 53/70 (75.71%), Query Frame = 3
Query:   27 FKVFT----DSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGESA 224
            FK++T    D +    D +I+ATGA AK+L  PG + +W RGISACAVCDGA PIFR+KPLAV+GGG+SA
Sbjct:   97 FKLWTEFNEDEEPTTTDAIILATGASAKRLGLPGEETYWQRGISACAVCDGAVPIFRNKPLAVVGGGDSA 166          
BLAST of FC923344 vs. ExPASy Swiss-Prot
Match: TRXB_PNECA (Thioredoxin reductase OS=Pneumocystis carinii GN=TRR1 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.883e-18
Identity = 44/72 (61.11%), Postives = 53/72 (73.61%), Query Frame = 3
Query:   18 KHRFKVFTDSKSVL---ADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGESA 224
            K  FK   +S   +   AD VI+ATGA A++L  PG + +W RGISACAVCDGAAPIFR KPLAV+GGG+SA
Sbjct:   93 KRPFKYCCESNEEVFHTADVVILATGAYARRLNIPGEEIYWQRGISACAVCDGAAPIFRGKPLAVVGGGDSA 164          
BLAST of FC923344 vs. ExPASy Swiss-Prot
Match: TRXB2_YEAST (Thioredoxin reductase 2, mitochondrial OS=Saccharomyces cerevisiae GN=TRR2 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.883e-18
Identity = 39/61 (63.93%), Postives = 50/61 (81.97%), Query Frame = 3
Query:   42 DSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGESA 224
            D++ V  D +I+ATGA AK++  PG + +W +GISACAVCDGA PIFR+KPLAVIGGG+SA
Sbjct:  129 DAEPVTTDAIILATGASAKRMHLPGEETYWQQGISACAVCDGAVPIFRNKPLAVIGGGDSA 189          
BLAST of FC923344 vs. ExPASy Swiss-Prot
Match: TRXB_KLULA (Thioredoxin reductase, mitochondrial OS=Kluyveromyces lactis GN=TRR1 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.869e-17
Identity = 41/70 (58.57%), Postives = 52/70 (74.29%), Query Frame = 3
Query:   27 FKVFT----DSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGESA 224
            FK +T    D +    D +I++TGA AK+L  PG + +W +GISACAVCDGA PIFR+KPLAVIGGG+SA
Sbjct:  127 FKFWTEFNEDQEPETTDAIILSTGASAKRLHLPGEETYWQQGISACAVCDGAVPIFRNKPLAVIGGGDSA 196          
The following BLAST results are available for this feature:
BLAST of FC923344 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
TRXB1_ARATH7.085e-2572.73Thioredoxin reductase 1 OS=Arabidopsis thaliana GN... [more]
TRXB2_ARATH2.692e-2470.13Thioredoxin reductase 2 OS=Arabidopsis thaliana GN... [more]
TRXB_DEBHA1.997e-1960.00Thioredoxin reductase OS=Debaryomyces hansenii GN=... [more]
TRXB_CANGA9.909e-1958.57Thioredoxin reductase OS=Candida glabrata GN=TRR1 ... [more]
TRXB1_YEAST9.909e-1960.00Thioredoxin reductase 1 OS=Saccharomyces cerevisia... [more]
TRXB_YARLI2.207e-1861.43Thioredoxin reductase OS=Yarrowia lipolytica GN=TR... [more]
TRXB_ASHGO2.207e-1860.00Thioredoxin reductase OS=Ashbya gossypii GN=TRR1 P... [more]
TRXB_PNECA2.883e-1861.11Thioredoxin reductase OS=Pneumocystis carinii GN=T... [more]
TRXB2_YEAST2.883e-1863.93Thioredoxin reductase 2, mitochondrial OS=Saccharo... [more]
TRXB_KLULA1.869e-1758.57Thioredoxin reductase, mitochondrial OS=Kluyveromy... [more]

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Properties
Property NameValue
Genbank descriptionC31704A08EF StrClemenN Citrus clementina cDNA clone C31704A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923344 ID=FC923344; Name=FC923344; organism=Citrus clementina; type=EST; length=228bp
AAGTTGGCAACTTCAGAAAGCATCGTTTTAAAGTTTTTACAGATTCCAAA
TCCGTTCTTGCTGATACTGTTATTGTCGCCACCGGCGCCGTTGCCAAAAA
GTTGCAATTCCCCGGTTCAGATGCGTTCTGGAACCGTGGCATATCGGCCT
GCGCAGTGTGTGATGGAGCCGCTCCGATATTTCGGGACAAACCCTTGGCC
GTGATTGGTGGCGGGGAATCAGCCATGG
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