FC923348

Overview
NameFC923348
Unique NameFC923348
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC923348_ssr384 microsatellite FC923348_ssr384:384..401. BLAST: Citrus ESTs to Prunus persica proteins V1
FC923348_ssr534 microsatellite FC923348_ssr534:534..548. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC923348 vs. ExPASy Swiss-Prot
Match: SF3B4_RAT (Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.510e-20
Identity = 46/76 (60.53%), Postives = 55/76 (72.37%), Query Frame = 1 
Query:  109 LQAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQANGTVGGPVPP 336
            ++AMNGQYLCNR ITVSYA+KKD+KGERHG+ AER+LAA NP SQ  RPH LFA  PP          ++G  +PP
Sbjct:  159 IEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSLGSGLPP 234
[Close]
BLAST of FC923348 vs. ExPASy Swiss-Prot
Match: SF3B4_MOUSE (Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.510e-20
Identity = 46/76 (60.53%), Postives = 55/76 (72.37%), Query Frame = 1 
Query:  109 LQAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQANGTVGGPVPP 336
            ++AMNGQYLCNR ITVSYA+KKD+KGERHG+ AER+LAA NP SQ  RPH LFA  PP          ++G  +PP
Sbjct:  159 IEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSLGSGLPP 234
[Close]
BLAST of FC923348 vs. ExPASy Swiss-Prot
Match: SF3B4_HUMAN (Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.510e-20
Identity = 46/76 (60.53%), Postives = 55/76 (72.37%), Query Frame = 1 
Query:  109 LQAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQANGTVGGPVPP 336
            ++AMNGQYLCNR ITVSYA+KKD+KGERHG+ AER+LAA NP SQ  RPH LFA  PP          ++G  +PP
Sbjct:  159 IEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSLGSGLPP 234
[Close]
BLAST of FC923348 vs. ExPASy Swiss-Prot
Match: SF3B4_CAEEL (Splicing factor 3B subunit 4 OS=Caenorhabditis elegans GN=sap-49 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 5.787e-17
Identity = 48/97 (49.48%), Postives = 58/97 (59.79%), Query Frame = 1 
Query:  109 LQAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAANNPSSQKSRPHTLFASGP-----------PSLQNAPQANGTVGGPVPPRPYANGAASG 366
            L+AMNGQ+LCNR ITVSYA+K+D+KGERHGT AER+LAA NP   K RPH +F+  P           P +  A  A+ T      P P    A SG
Sbjct:  159 LEAMNGQFLCNRAITVSYAFKRDSKGERHGTAAERMLAAQNPLFPKDRPHQVFSDVPLGVPANTPLAMPGVHAAIAAHATGRPGYQPPPLMGMAQSG 255
The following BLAST results are available for this feature:
BLAST of FC923348 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
SF3B4_RAT2.510e-2060.53Splicing factor 3B subunit 4 OS=Rattus norvegicus ... [more]
SF3B4_MOUSE2.510e-2060.53Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf... [more]
SF3B4_HUMAN2.510e-2060.53Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF... [more]
SF3B4_CAEEL5.787e-1749.48Splicing factor 3B subunit 4 OS=Caenorhabditis ele... [more]
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Properties
Property NameValue
Genbank descriptionC31704A12EF StrClemenN Citrus clementina cDNA clone C31704A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923348 ID=FC923348; Name=FC923348; organism=Citrus clementina; type=EST; length=685bp
GTATGATTCATGTAATAATATCAATTGTTAAGACACCGAACAAGCACCAT
GACTTGGATTCATCTATCTTGTTCAATTTTGAAGATGAGTATAAATTTTC
ATCTATTGTTGCAGGCAATGAATGGCCAATACCTTTGCAACCGTCAAATT
ACTGTCTCATATGCATATAAGAAAGACACTAAAGGAGAGCGCCATGGTAC
TCCGGCAGAGAGAATTTTGGCGGCAAACAATCCGAGTTCCCAGAAGAGTA
GGCCCCACACTTTATTTGCGAGTGGACCTCCATCACTACAGAATGCTCCT
CAGGCCAATGGTACTGTTGGTGGACCAGTGCCTCCACGCCCATATGCAAA
TGGTGCTGCTTCAGGCCCAATTTCAGCTGTTCGACCACCACCACCACCAC
CACAAGCTGCAGCATTCCCACCCATGCAAGTGGCTGGACAAGCCGCTTGG
CAAGGTCAGCCACAGCATATAGGTCAAGGTGTTCCACAACCAGTCATGCC
CCCACCTATGCAGTTCAGGCCACCACCAAATATGCCGCCGCCGCCGCCTC
CTCAAGTAGCTTCAGCTATGCAAAGACCCCCTCCACAACCAATGGGAATG
GGTGCACCACCCCCGGTTTGGCGGCAGCCGCCACCACCTCCACAGCAATT
GCTTGGAAGACCCCCATGCCACATATGTCAATGCC
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