FC923354

Overview
NameFC923354
Unique NameFC923354
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15510 contig Ccv1_Contig15510:426..1158. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923354 vs. ExPASy Swiss-Prot
Match: DECR2_ARATH (Peroxisomal 2,4-dienoyl-CoA reductase OS=Arabidopsis thaliana GN=At3g12800 PE=2 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 1.209e-71
Identity = 130/183 (71.04%), Postives = 147/183 (80.33%), Query Frame = 1
Query:    1 VMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXX-ILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPIGDTPGMNKLAPDEINSKARDYMPLYKLGEKWDIAMAALYLTSDTGKYVNGTTLIVDGGLWLSRPRHLPKDAVKQLSRTVEKRSRDKPIGVPKSKL 546
            V+DID+VGTF MCH ALKYLKK             I+NISATLHYTASWYQIH           TRNLALEWG DYDIRVNGIAPGPIG TPGM+KL P+EI +K R+YMPLYK+GEKWDIAMAALYL+ D+GKYV+G T++VDGGLWLS+PRHLPK+AVKQLSR VEKRSR KP+G+P SKL
Sbjct:  116 VLDIDAVGTFNMCHAALKYLKKGAPGRDSSSGGGSIINISATLHYTASWYQIHVSAAKAAVDATTRNLALEWGTDYDIRVNGIAPGPIGGTPGMSKLVPEEIENKTREYMPLYKVGEKWDIAMAALYLSCDSGKYVSGLTMVVDGGLWLSKPRHLPKEAVKQLSRAVEKRSRAKPVGLPTSKL 298          
BLAST of FC923354 vs. ExPASy Swiss-Prot
Match: DECR2_MOUSE (Peroxisomal 2,4-dienoyl-CoA reductase OS=Mus musculus GN=Decr2 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.832e-19
Identity = 59/163 (36.20%), Postives = 87/163 (53.37%), Query Frame = 1
Query:    1 VMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPIGDTPGMNKLAPDEINSKARDYM-PLYKLGEKWDIAMAALYLTSDTGKYVNGTTLIVDGGLWLSRPRHLPKDAVKQL 486
            V+DID++GTF +     K   +            I+NI+ATL       Q+H          +TR+LA+EWG   +IRVN +APG I  T G+ +L     +SK + +  P+ +LG K +IA + LYL S    YV+G  L+VDGG W++ P     + +KQL
Sbjct:  133 VVDIDTIGTFNVSSVLYKKFFRDHGGV-------IVNITATLSMRGQVLQLHAGAAKAAVDAMTRHLAVEWGPQ-NIRVNSLAPGAISGTEGLRRLRGSNASSKLKHFSNPIPRLGTKTEIAHSVLYLASPLASYVSGIVLVVDGGSWMTFP-----NGIKQL 282          
BLAST of FC923354 vs. ExPASy Swiss-Prot
Match: SPS19_YEAST (Peroxisomal 2,4-dienoyl-CoA reductase SPS19 OS=Saccharomyces cerevisiae GN=SPS19 PE=1 SV=4)

HSP 1 Score: 94.7449 bits (234), Expect = 5.330e-19
Identity = 58/147 (39.46%), Postives = 77/147 (52.38%), Query Frame = 1
Query:    1 VMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPIGDTPGMNKLAPDEINSKARDYMPLYKLGEKWDIAMAALYLTSDTGKYVNGTTLIVDGGLW 441
            V+DID +G+F      LK LKK            IL +SAT HY    +Q H          + +NLA+E G    IR N IAPG I +T G+ +LA  +   KA   +PL +LG   DIA + +Y+ S    YV GT L+VDGG+W
Sbjct:  132 VVDIDLLGSFNTAKACLKELKKSKGS--------ILFVSATFHYYGVPFQGHVGAAKAGIDALAKNLAVELGP-LGIRSNCIAPGAIDNTEGLKRLAGKKYKEKALAKIPLQRLGSTRDIAESTVYIFSPAASYVTGTVLVVDGGMW 269          
BLAST of FC923354 vs. ExPASy Swiss-Prot
Match: DECR2_PONAB (Peroxisomal 2,4-dienoyl-CoA reductase OS=Pongo abelii GN=DECR2 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.187e-18
Identity = 58/152 (38.16%), Postives = 77/152 (50.66%), Query Frame = 1
Query:    1 VMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPIGDTPGMNKLA-PDEINSKARDYMPLYKLGEKWDIAMAALYLTSDTGKYVNGTTLIVDGGLWLSRP 453
            VMDID+ GTF +     +   +            I+NI+ATL       Q+H          +TR+LA+EWG   +IRVN +APGPI  T G+ +L  P    S      PL +LG K +IA + LYL S    YV G  L+ DGG WL+ P
Sbjct:  133 VMDIDTSGTFNVSRVLYEKFFRDHGGV-------IVNITATLGNRGQALQVHAGSAKAAVDAMTRHLAVEWGPQ-NIRVNSLAPGPISGTEGLRRLGGPQASLSTKVTASPLQRLGNKTEIAHSVLYLASPLASYVTGAVLVADGGAWLTFP 276          
BLAST of FC923354 vs. ExPASy Swiss-Prot
Match: DECR2_HUMAN (Peroxisomal 2,4-dienoyl-CoA reductase OS=Homo sapiens GN=DECR2 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.187e-18
Identity = 58/152 (38.16%), Postives = 77/152 (50.66%), Query Frame = 1
Query:    1 VMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPIGDTPGMNKLA-PDEINSKARDYMPLYKLGEKWDIAMAALYLTSDTGKYVNGTTLIVDGGLWLSRP 453
            VMDID+ GTF +     +   +            I+NI+ATL       Q+H          +TR+LA+EWG   +IRVN +APGPI  T G+ +L  P    S      PL +LG K +IA + LYL S    YV G  L+ DGG WL+ P
Sbjct:  133 VMDIDTSGTFNVSRVLYEKFFRDHGGV-------IVNITATLGNRGQALQVHAGSAKAAVDAMTRHLAVEWGPQ-NIRVNSLAPGPISGTEGLRRLGGPQASLSTKVTASPLQRLGNKTEIAHSVLYLASPLASYVTGAVLVADGGAWLTFP 276          
BLAST of FC923354 vs. ExPASy Swiss-Prot
Match: DECR2_RAT (Peroxisomal 2,4-dienoyl-CoA reductase OS=Rattus norvegicus GN=Decr2 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.645e-18
Identity = 56/156 (35.90%), Postives = 85/156 (54.49%), Query Frame = 1
Query:    1 VMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPIGDTPGMNKLAPDEINSKARDYM--PLYKLGEKWDIAMAALYLTSDTGKYVNGTTLIVDGGLWLSRPRHL 462
            V+DID++GTF +     +   +            I+NI+ATL       Q+H          +TR+LA+EWG   +IRVN +APG I  T G+ +L   + +SK + Y+  P+ +LG K +IA + LYL S    YV+G  L+VDGG W++ P  +
Sbjct:  133 VVDIDTLGTFNVSRVLYEKFFRDHGGV-------IVNITATLSMRGQVLQLHAGAAKAAVDAMTRHLAVEWGPQ-NIRVNSLAPGAISGTEGLRRLGGPKASSKFK-YLSSPIPRLGTKTEIAHSVLYLASPLASYVSGIVLVVDGGSWMTLPNDI 279          
BLAST of FC923354 vs. ExPASy Swiss-Prot
Match: DECR2_DANRE (Peroxisomal 2,4-dienoyl-CoA reductase OS=Danio rerio GN=decr2 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.005e-17
Identity = 54/150 (36.00%), Postives = 75/150 (50.00%), Query Frame = 1
Query:    1 VMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPIGDTPGMNKLAPDEINSKARDY-MPLYKLGEKWDIAMAALYLTSDTGKYVNGTTLIVDGGLWLS 447
            VM+ID++GTF          K             I+NISATL Y     Q+H          +TR+LA+EWG    +RVN +APGPI  T G  +L      +    + +PL + G K ++A A L+L S    YV G+ L+ DGG WL+
Sbjct:  140 VMEIDTMGTFNTS-------KVIYDKWFKDHGGSIVNISATLGYRGQALQVHAGSAKAANDAMTRHLAVEWGPS-GVRVNTVAPGPISGTEGYRRLGGSHAETAGAFHSIPLQRAGNKTEMAHAVLFLASRASSYVTGSVLVADGGAWLT 281          
BLAST of FC923354 vs. ExPASy Swiss-Prot
Match: FADH_BACSU (Probable 2,4-dienoyl-CoA reductase OS=Bacillus subtilis GN=fadH PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.896e-16
Identity = 47/116 (40.52%), Postives = 65/116 (56.03%), Query Frame = 1
Query:  103 ILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPIGDTPGMNKLAPDE-INSKARDYMPLYKLGEKWDIAMAALYLTSDTGKYVNGTTLIVDGGLWLS 447
            ILN++AT  + A    +H          +TR LA+EWG+ Y IR N IAPGPI  T G  KL   E   ++  + +PL +LG   +IA  A +L SD   Y+NG  + +DGG WL+
Sbjct:  135 ILNMAATYAWGAGAGVVHSAAAKAGVLSLTRTLAVEWGSKYGIRTNAIAPGPIERTGGAEKLFESEKAMARTMNSVPLGRLGTPEEIAALAAFLLSDEASYINGDCITMDGGQWLN 250          
The following BLAST results are available for this feature:
BLAST of FC923354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
DECR2_ARATH1.209e-7171.04Peroxisomal 2,4-dienoyl-CoA reductase OS=Arabidops... [more]
DECR2_MOUSE1.832e-1936.20Peroxisomal 2,4-dienoyl-CoA reductase OS=Mus muscu... [more]
SPS19_YEAST5.330e-1939.46Peroxisomal 2,4-dienoyl-CoA reductase SPS19 OS=Sac... [more]
DECR2_PONAB1.187e-1838.16Peroxisomal 2,4-dienoyl-CoA reductase OS=Pongo abe... [more]
DECR2_HUMAN1.187e-1838.16Peroxisomal 2,4-dienoyl-CoA reductase OS=Homo sapi... [more]
DECR2_RAT2.645e-1835.90Peroxisomal 2,4-dienoyl-CoA reductase OS=Rattus no... [more]
DECR2_DANRE1.005e-1736.00Peroxisomal 2,4-dienoyl-CoA reductase OS=Danio rer... [more]
FADH_BACSU1.896e-1640.52Probable 2,4-dienoyl-CoA reductase OS=Bacillus sub... [more]
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Properties
Property NameValue
Genbank descriptionC31704B06EF StrClemenN Citrus clementina cDNA clone C31704B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923354 ID=FC923354; Name=FC923354; organism=Citrus clementina; type=EST; length=733bp
GTTATGGATATTGATTCTGTCGGCACATTCACAATGTGCCATGAAGCACT
TAAATATCTTAAAAAAGGTGGACCTGGGAGAAGCTCGGCTGGTGGTGGAT
CCATTTTGAACATTAGTGCTACTTTACATTATACAGCTTCTTGGTACCAA
ATACATGTAGCTGCAGCCAAGGCAGCTGTTGATGCCATTACCAGAAACTT
GGCACTGGAATGGGGAGCTGACTATGATATTCGAGTCAATGGAATTGCCC
CAGGCCCCATCGGTGATACCCCGGGCATGAATAAACTTGCACCTGATGAG
ATTAATAGCAAAGCTCGAGACTATATGCCGTTATACAAACTTGGGGAGAA
ATGGGATATTGCTATGGCTGCTCTGTACCTTACTTCTGATACAGGGAAAT
ATGTCAATGGGACAACTCTTATAGTCGATGGAGGACTTTGGCTGAGCCGG
CCTCGTCATTTGCCAAAAGATGCTGTTAAGCAGCTTTCTCGAACTGTGGA
GAAGAGATCTAGGGATAAACCCATTGGTGTTCCAAAGAGCAAGCTCTGAA
CCAGTTCAACAGGGTCCAGGCATGCAATTGTTTACATTTGGGTTCTAAGC
AGCGAGCTTATACCACTCAATAAAATCACTTACGGAGTTGCCGATGCTGT
AGTTTACATTTTAAATTTTTAGAACAGTCAGATGCTTTGTAGATTATTCA
TCATATTTCTCCCACACACCCCATGAAATACTG
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