FC923394

Overview
NameFC923394
Unique NameFC923394
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8168 contig Ccv1_Contig8168:742..1438. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923394 vs. ExPASy Swiss-Prot
Match: PBS1_ARATH (Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.554e-47
Identity = 103/223 (46.19%), Postives = 134/223 (60.09%), Query Frame = 2
Query:    5 IHHPNVVCLLGYSAHDDTRFIVYELMENRSLDIQLHG-PSHGSALTWHMRMKIALDTARGLEYLHEHCNPAVIHRDLKSSNILLDSKFNAKLSDFGLAITDGSQNKNNL--KLSGTLGYVAPEYLLDGKLTDKSDVYAFXXXXXXXXXXXXXXXKLAPAQCQSIVTWAMPQLTDRSKLPNIVGPVIKSTMDLKHLYQVAAVAVLCVQPGASYRPLITDVLHSL 664
            +HHPN+V L+GY A  D R +VYE M   SL+  LH  P    AL W+MRMKIA   A+GLE+LH+  NP VI+RD KSSNILLD  F+ KLSDFGLA    + +K+++  ++ GT GY APEY + G+LT KSDVY+F                  P   Q++V WA P   DR K   +  P +K     + LYQ  AVA +C+Q  A+ RPLI DV+ +L
Sbjct:  138 LHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKEALDWNMRMKIAAGAAKGLEFLHDKANPPVIYRDFKSSNILLDEGFHPKLSDFGLAKLGPTGDKSHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGRKAIDSEMPHGEQNLVAWARPLFNDRRKFIKLADPRLKGRFPTRALYQALAVASMCIQEQAATRPLIADVVTAL 360          
BLAST of FC923394 vs. ExPASy Swiss-Prot
Match: RLCK7_ARATH (Probable serine/threonine-protein kinase RLCKVII OS=Arabidopsis thaliana GN=At1g07870 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.354e-43
Identity = 93/221 (42.08%), Postives = 130/221 (58.82%), Query Frame = 2
Query:   11 HPNVVCLLGYSAHDDTRFIVYELMENRSLDIQLHG-PSHGSALTWHMRMKIALDTARGLEYLHEHCNPAVIHRDLKSSNILLDSKFNAKLSDFGLAITDGSQNKNNL--KLSGTLGYVAPEYLLDGKLTDKSDVYAFXXXXXXXXXXXXXXXKLAPAQCQSIVTWAMPQLTDRSKLPNIVGPVIKSTMDLKHLYQVAAVAVLCVQPGASYRPLITDVLHSL 664
            HPN+V L+G+ A  D R +VYE M   SL+  LH  PS    L W+ RMKIA   ARGLEYLH+   P VI+RDLK SNILL   +  KLSDFGLA    S +K ++  ++ GT GY AP+Y + G+LT KSD+Y+F                    + Q++V WA P   DR   P +V P+++    ++ LYQ  A++ +CVQ   + RP+++DV+ +L
Sbjct:  157 HPNLVKLIGFCAEGDQRLLVYEYMPQGSLEDHLHVLPSGKKPLDWNTRMKIAAGAARGLEYLHDRMTPPVIYRDLKCSNILLGEDYQPKLSDFGLAKVGPSGDKTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLELITGRKAIDNTKTRKDQNLVGWARPLFKDRRNFPKMVDPLLQGQYPVRGLYQALAISAMCVQEQPTMRPVVSDVVLAL 377          
BLAST of FC923394 vs. ExPASy Swiss-Prot
Match: SRF8_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 8 OS=Arabidopsis thaliana GN=SRF8 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.952e-40
Identity = 91/226 (40.27%), Postives = 127/226 (56.19%), Query Frame = 2
Query:    5 IHHPNVVCLLGYSAHDDTRFIVYELMENRSLDIQLHGPSHGSA-LTWHMRMKIALDTARGLEYLHEHCNPAVIHRDLKSSNILLDSKFNAKLSDFGL-AITDGSQNKNNLKLSGTLGYVAPEYLLDGKLTDKSDVYAFXXXXXXXXXXXXXXXKLAPAQCQSIVTWAMPQLTDRSKLPNIVGPVIKSTMDLKHLYQVAAVAVLCVQPGASYRPLITDVLHSLIPLV 676
            + HPN+V L GY      R +VYE + N +LD  LH     S  LTW+ R+K+AL TA+ LEYLHE C P+++HR+ KS+NILLD + N  LSD GL A+T  ++ + + ++ G+ GY APE+ L G  T KSDVY F                      QS+V WA PQL D   L  +V P +      K L + A +  LC+QP   +RP +++V+  L+ LV
Sbjct:  448 LRHPNIVPLAGYCTEHGQRLLVYEYVGNGNLDDTLHTNDDRSMNLTWNARVKVALGTAKALEYLHEVCLPSIVHRNFKSANILLDEELNPHLSDSGLAALTPNTERQVSTQVVGSFGYSAPEFALSGIYTVKSDVYTFGVVMLELLTGRKPLDSSRTRAEQSLVRWATPQLHDIDALSKMVDPSLNGMYPAKSLSRFADIIALCIQPEPEFRPPMSEVVQQLVRLV 673          
BLAST of FC923394 vs. ExPASy Swiss-Prot
Match: Y1677_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g67720 OS=Arabidopsis thaliana GN=At1g67720 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.154e-38
Identity = 92/230 (40.00%), Postives = 128/230 (55.65%), Query Frame = 2
Query:    5 IHHPNVVCLLGYSAHDDTRFIVYELMENRSLDIQLHGPSHGSALTWHMRMKIALDTARGLEYLHEHCNPAVIHRDLKSSNILLDSKFNAKLSDFGLA-ITDGSQNKNNLKLSGTLGYVAPEYLLDGKLTDKSDVYAFXXXXXXXXXXXXXXXKLAPAQCQSIVTWAMPQLTDRSKLPNIVGPVIKSTMDLKHLYQVAAVAVLCVQPGASYRPLITDVLHSLIPLVPVELG 691
            IHH N+V L+GY    D R +VYE M N SL   LHG S    L W  R++IA D A+GLEYLH  CNP++IHRD+KSSNILLD    AK+SDFGL+  T+      +    GT+GY+ PEY    +LT+KSDVY+F                       +IV WA   L  +  +  I+ P I S + ++ +++VA VA  CV+     RP + +V+ ++   + +E G
Sbjct:  657 IHHRNLVPLIGYCEEADRRILVYEYMHNGSLGDHLHGSSDYKPLDWLTRLQIAQDAAKGLEYLHTGCNPSIIHRDVKSSNILLDINMRAKVSDFGLSRQTEEDLTHVSSVAKGTVGYLDPEYYASQQLTEKSDVYSFGVVLFELLSGKKPVSAEDFGPELNIVHWAR-SLIRKGDVCGIIDPCIASNVKIESVWRVAEVANQCVEQRGHNRPRMQEVIVAIQDAIRIERG 885          
BLAST of FC923394 vs. ExPASy Swiss-Prot
Match: SRF6_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana GN=SRF6 PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.154e-38
Identity = 91/225 (40.44%), Postives = 123/225 (54.67%), Query Frame = 2
Query:    5 IHHPNVVCLLGYSAHDDTRFIVYELMENRSLDIQLH-GPSHGSALTWHMRMKIALDTARGLEYLHEHCNPAVIHRDLKSSNILLDSKFNAKLSDFGLAITDGSQNKNNLKLSGTLGYVAPEYLLDGKLTDKSDVYAFXXXXXXXXXXXXXXXKLAPAQCQSIVTWAMPQLTDRSKLPNIVGPVIKSTMDLKHLYQVAAVAVLCVQPGASYRPLITDVLHSLIPLV 676
            + HPNV  L+GY A      +VYE  +N SL   LH       AL W+ R+KIAL TAR LEYLHE C+P+++ +++KS+NILLDS+ N  LSD GLA        N L      GY APE  + G+ + KSD+Y+F                      QS+V WA PQL D   L  +V P +K    +K L + A V  LCVQP   +RP +++V+ +L+ LV
Sbjct:  469 LDHPNVTKLVGYCAEHGQHLVVYEFHKNGSLHDFLHLSEEESKALVWNSRVKIALGTARALEYLHEVCSPSIVDKNIKSANILLDSELNPHLSDSGLA--SFLPTANELLNQTDEGYSAPEVSMSGQYSLKSDIYSFGVVMLELLTGRKPFDSTRSRSEQSLVRWATPQLHDIDALAKMVDPALKGLYPVKSLSRFADVIALCVQPEPEFRPPMSEVVQALVVLV 691          
BLAST of FC923394 vs. ExPASy Swiss-Prot
Match: Y3545_ARATH (Probable receptor-like protein kinase At3g55450 OS=Arabidopsis thaliana GN=At3g55450 PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.339e-37
Identity = 93/228 (40.79%), Postives = 132/228 (57.89%), Query Frame = 2
Query:    5 IHHPNVVCLLGYSAHDDTRFIVYELMENRSLDIQL--HGPSHGSALTWHMRMKIALDTARGLEYLHEHCNPA-VIHRDLKSSNILLDSKFNAKLSDFGLAITD--GSQNKNNLKLSGTLGYVAPEYLLDGKLTDKSDVYAFXXXXXXXXXXXXXXXKLAPAQCQSIVTWAMPQLTDRSKLPNIVGPVIKSTMDLKHLYQVAAVAVLCVQPGASYRPLITDVLHSLIPL 673
            + HPN+V L+GY   D+ R +VYE M   SL+  L  +G      L+W +R+K+ALD A+GL +LH   +P  VI+RD+K+SNILLDS FNAKLSDFGLA     G Q+  + ++ GT GY APEY+  G L  +SDVY+F                  PA+ Q++V WA P LT R K+  IV   + S    +   ++A++AV C+      RP +  V+ +L+ L
Sbjct:  122 LSHPNLVKLIGYCLEDEQRLLVYEFMHKGSLENHLFANGNKDFKPLSWILRIKVALDAAKGLAFLHS--DPVKVIYRDIKASNILLDSDFNAKLSDFGLARDGPMGEQSYVSTRVMGTFGYAAPEYVSTGHLNARSDVYSFGVVLLELLCGRQALDHNRPAKEQNLVDWARPYLTSRRKVLLIVDTRLNSQYKPEGAVRLASIAVQCLSFEPKSRPTMDQVVRALVQL 347          
BLAST of FC923394 vs. ExPASy Swiss-Prot
Match: Y2197_ARATH (Probable protein kinase At2g41970 OS=Arabidopsis thaliana GN=At2g41970 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.339e-37
Identity = 88/232 (37.93%), Postives = 131/232 (56.47%), Query Frame = 2
Query:    5 IHHPNVVCLLGYSAHDDTRFIVYELMENRSLDIQLHG------PSHGSALTWHMRMKIALDTARGLEYLHEHCNPAVIHRDLKSSNILLDSKFNAKLSDFGL--AITDGSQNKNNLKLSGTLGYVAPEYLLDGKLTDKSDVYAFXXXXXXXXXXXXXXXKLAPAQCQSIVTWAMPQLTDRSKLPNIVGPVIKSTMDLKHLYQVAAVAVLCVQPGASYRPLITDVLHSLIPLV 676
            + H + V LLGY    + R ++Y+     SL   LHG         G  L W+ R+KIA   A+GLE+LHE   P ++HRD++SSN+LL   F AK++DF L  A +D +   ++ ++ GT GY APEY + G++T KSDVY+F                  P   QS+VTWA P+L++  K+   + P + +    K + ++AAVA LCVQ  A +RP +T V+ +L PL+
Sbjct:  124 LKHDHFVELLGYCLEANNRILIYQFATKGSLHDVLHGRKGVQGAEPGPVLNWNQRVKIAYGAAKGLEFLHEKVQPPIVHRDVRSSNVLLFDDFVAKMADFNLTNASSDTAARLHSTRVLGTFGYHAPEYAMTGQITQKSDVYSFGVVLLELLTGRKPVDHTMPKGQQSLVTWATPRLSE-DKVKQCIDPKLNNDFPPKAVAKLAAVAALCVQYEADFRPNMTIVVKALQPLL 354          
BLAST of FC923394 vs. ExPASy Swiss-Prot
Match: Y1154_ARATH (Probable serine/threonine-protein kinase At1g01540 OS=Arabidopsis thaliana GN=At1g01540 PE=1 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 3.054e-37
Identity = 89/222 (40.09%), Postives = 124/222 (55.86%), Query Frame = 2
Query:    5 IHHPNVVCLLGYSAHDDTRFIVYELMENRSLDIQLHGP-SHGSALTWHMRMKIALDTARGLEYLHEHCNPAVIHRDLKSSNILLDSKFNAKLSDFGLAITDGSQNKN-NLKLSGTLGYVAPEYLLDGKLTDKSDVYAFXXXXXXXXXXXXXXXKLAPAQCQSIVTWAMPQLTDRSKLPNIVGPVIKSTMDLKHLYQVAAVAVLCVQPGASYRPLITDVLHSL 664
            + H N+V LLGY      R +VY+ ++N +L+  +HG     S LTW +RM I L  A+GL YLHE   P V+HRD+KSSNILLD ++NAK+SDFGLA   GS++     ++ GT GYVAPEY   G L +KSD+Y+F                  P    ++V W    + +R +   +V P I      K L +V  VA+ CV P A+ RP +  ++H L
Sbjct:  205 VRHKNLVRLLGYCVEGAYRMLVYDFVDNGNLEQWIHGDVGDVSPLTWDIRMNIILGMAKGLAYLHEGLEPKVVHRDIKSSNILLDRQWNAKVSDFGLAKLLGSESSYVTTRVMGTFGYVAPEYACTGMLNEKSDIYSFGILIMEIITGRNPVDYSRPQGETNLVDWLKSMVGNR-RSEEVVDPKIPEPPSSKALKRVLLVALRCVDPDANKRPKMGHIIHML 425          
BLAST of FC923394 vs. ExPASy Swiss-Prot
Match: APK2B_ARATH (Protein kinase 2B, chloroplastic OS=Arabidopsis thaliana GN=APK2B PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.054e-37
Identity = 91/231 (39.39%), Postives = 130/231 (56.28%), Query Frame = 2
Query:    5 IHHPNVVCLLGYSAHDDTRFIVYELMENRSLDIQLHGPSHGSALTWHMRMKIALDTARGLEYLHEHCNPAVIHRDLKSSNILLDSKFNAKLSDFGLAITDGSQNKNNL--KLSGTLGYVAPEYLLDGKLTDKSDVYAFXXXXXXXXXXXXXXXKLAPAQCQSIVTWAMPQLTDRSKLPNIVGPVIKSTMDLKHLYQVAAVAVLCVQPGASYRPLITDVLHSLIPLVPVELG 691
            + HPN+V L+GY    + R +VYE M   SL+  L        LTW +RMK+A+  A+GL +LH+     VI+RD K++NILLD++FN+KLSDFGLA    + +K ++  ++ GT GY APEY+  G+LT KSDVY+F               K      QS+V WA P L D+ KL  I+   +      K  Y  A++A+ C+ P A  RP +++VL  L  L   + G
Sbjct:  144 LSHPNLVKLVGYCVEGENRLLVYEFMPKGSLENHLFRRG-AQPLTWAIRMKVAIGAAKGLTFLHD-AKSQVIYRDFKAANILLDAEFNSKLSDFGLAKAGPTGDKTHVSTQVMGTHGYAAPEYVATGRLTAKSDVYSFGVVLLELLSGRRAVDKSKVGMEQSLVDWATPYLGDKRKLFRIMDTRLGGQYPQKGAYTAASLALQCLNPDAKLRPKMSEVLAKLDQLESTKPG 372          
BLAST of FC923394 vs. ExPASy Swiss-Prot
Match: Y2706_ARATH (Probable receptor-like protein kinase At2g47060 OS=Arabidopsis thaliana GN=At2g47060 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.210e-37
Identity = 93/232 (40.09%), Postives = 130/232 (56.03%), Query Frame = 2
Query:    5 IHHPNVVCLLGYSAHDDTRFIVYELMENRSLDIQLHG------PSHGSALTWHMRMKIALDTARGLEYLHEHCNPAVIHRDLKSSNILLDSKFNAKLSDFGLA--ITDGSQNKNNLKLSGTLGYVAPEYLLDGKLTDKSDVYAFXXXXXXXXXXXXXXXKLAPAQCQSIVTWAMPQLTDRSKLPNIVGPVIKSTMDLKHLYQVAAVAVLCVQPGASYRPLITDVLHSLIPLV 676
            + H N V LLGY    ++R + YE   N SL   LHG         G  L+W+ R+KIA+  ARGLEYLHE  NP +IHRD+KSSN+LL     AK++DF L+    D +   ++ ++ GT GY APEY + G+L  KSDVY+F                  P   QS+VTWA P+L++  K+   V   +      K + ++AAVA LCVQ  A +RP ++ V+ +L PL+
Sbjct:  123 LKHDNFVQLLGYCVDGNSRILSYEFANNGSLHDILHGRKGVKGAQPGPVLSWYQRVKIAVGAARGLEYLHEKANPHIIHRDIKSSNVLLFEDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHRLPRGQQSLVTWATPKLSE-DKVKQCVDARLGGDYPPKAVAKLAAVAALCVQYEADFRPNMSIVVKALQPLL 353          
The following BLAST results are available for this feature:
BLAST of FC923394 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 326
Match NameE-valueIdentityDescription
PBS1_ARATH5.554e-4746.19Serine/threonine-protein kinase PBS1 OS=Arabidopsi... [more]
RLCK7_ARATH6.354e-4342.08Probable serine/threonine-protein kinase RLCKVII O... [more]
SRF8_ARATH2.952e-4040.27Protein STRUBBELIG-RECEPTOR FAMILY 8 OS=Arabidopsi... [more]
Y1677_ARATH6.154e-3840.00Probable LRR receptor-like serine/threonine-protei... [more]
SRF6_ARATH6.154e-3840.44Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsi... [more]
Y3545_ARATH2.339e-3740.79Probable receptor-like protein kinase At3g55450 OS... [more]
Y2197_ARATH2.339e-3737.93Probable protein kinase At2g41970 OS=Arabidopsis t... [more]
Y1154_ARATH3.054e-3740.09Probable serine/threonine-protein kinase At1g01540... [more]
APK2B_ARATH3.054e-3739.39Protein kinase 2B, chloroplastic OS=Arabidopsis th... [more]
Y2706_ARATH5.210e-3740.09Probable receptor-like protein kinase At2g47060 OS... [more]

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Properties
Property NameValue
Genbank descriptionC31704E10EF StrClemenN Citrus clementina cDNA clone C31704E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923394 ID=FC923394; Name=FC923394; organism=Citrus clementina; type=EST; length=697bp
GTAAATTCACCACCCAAATGTTGTTTGTCTGTTGGGTTATAGTGCTCATG
ATGACACAAGGTTTATTGTTTATGAATTGATGGAAAATCGGTCCCTTGAT
ATTCAATTGCATGGTCCTTCTCATGGATCAGCATTGACTTGGCATATGCG
AATGAAAATTGCTCTTGATACCGCTAGAGGATTAGAATATTTACATGAGC
ACTGCAACCCTGCAGTCATTCATAGAGATCTGAAATCCTCCAATATACTT
CTAGATTCCAAGTTTAATGCTAAGCTCTCAGATTTTGGTCTTGCCATAAC
CGATGGATCCCAAAACAAGAACAATCTTAAGCTTTCGGGCACTTTGGGAT
ATGTGGCTCCCGAGTATCTTTTAGATGGTAAATTGACAGACAAGAGTGAT
GTCTATGCTTTTGGAGTTGTGCTTCTTGAACTTCTCTTAGGAAGAAGGCC
AGTGGAGAAACTGGCACCAGCTCAGTGCCAATCTATTGTCACATGGGCCA
TGCCTCAACTCACTGACAGATCTAAACTCCCAAACATTGTGGGTCCTGTG
ATTAAAAGTACAATGGATTTAAAGCATTTATACCAGGTTGCAGCTGTTGC
TGTGTTATGTGTGCAACCGGGAGCCAGTTATCGACCACTGATAACGGATG
TTTTGCACTCTCTTATCCCACTCGTTCCAGTGGAGCTTGGAAGAACT
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