FC923402

Overview
NameFC923402
Unique NameFC923402
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13930 contig Ccv1_Contig13930:232..922. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923402 vs. ExPASy Swiss-Prot
Match: XTH28_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 28 OS=Arabidopsis thaliana GN=XTH28 PE=2 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 3.150e-103
Identity = 170/230 (73.91%), Postives = 201/230 (87.39%), Query Frame = 1
Query:    1 VHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDITESSKVSIPTGVSPSQRIKMENFRKKHMTYSYCYDQI 690
            V L+LDERTGSGFVS+D+YLHGFFS+SIKLPADY+AGVV+AFY+SNGD++EKNHDEIDFEFLGNIRG+ WRIQTNIYGNGST +GREERYNLWFDP++DFHQYSILW+ S IIFY+D +PIRE KRTASMGGDFPAKPMSLY+TIWDGS WAT+GGKY VNYKYAPYV++F+D +LHGC+ DP E+  S C       + + + ++ SQR KME FR+KHMTYSYCYD +
Sbjct:   53 VRLTLDERTGSGFVSNDIYLHGFFSSSIKLPADYSAGVVIAFYLSNGDLYEKNHDEIDFEFLGNIRGREWRIQTNIYGNGSTHLGREERYNLWFDPTEDFHQYSILWSLSHIIFYVDNVPIREVKRTASMGGDFPAKPMSLYSTIWDGSKWATDGGKYGVNYKYAPYVSQFTDLILHGCAVDPTEKFPS-CKDEAVQNLRLASEITESQRNKMEIFRQKHMTYSYCYDHM 281          
BLAST of FC923402 vs. ExPASy Swiss-Prot
Match: XTH27_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 27 OS=Arabidopsis thaliana GN=XTH27 PE=2 SV=2)

HSP 1 Score: 372.474 bits (955), Expect = 1.197e-102
Identity = 172/229 (75.11%), Postives = 194/229 (84.72%), Query Frame = 1
Query:    1 VHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDITESSKVSIPTGVSPSQRIKMENFRKKHMTYSYCYDQ 687
            V L+LDERTGSGFVS+D YLHGFFSASIKLP+DYTAGVVVAFYMSNGDM+EKNHDEIDFEFLGNIR K WR+QTNIYGNGST  GREERYNLWFDP++DFHQYSILW+DS IIF++D +PIRE KRTA MGG FP+KPMSLY TIWDGS WATNGGKY VNYKYAPY+  FSD VLHGC  DPIEQ   +CD   +  +     ++PSQR KM+ FR++ MTYSYCYD+
Sbjct:   53 VRLTLDERTGSGFVSNDYYLHGFFSASIKLPSDYTAGVVVAFYMSNGDMYEKNHDEIDFEFLGNIREKEWRVQTNIYGNGSTHSGREERYNLWFDPTEDFHQYSILWSDSHIIFFVDNVPIREVKRTAEMGGHFPSKPMSLYTTIWDGSKWATNGGKYGVNYKYAPYIARFSDLVLHGCPVDPIEQ-FPRCDEGAAEDMRAAQEITPSQRSKMDVFRRRLMTYSYCYDR 280          
BLAST of FC923402 vs. ExPASy Swiss-Prot
Match: XTH30_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 30 OS=Arabidopsis thaliana GN=XTH30 PE=2 SV=2)

HSP 1 Score: 317.005 bits (811), Expect = 5.967e-86
Identity = 147/234 (62.82%), Postives = 176/234 (75.21%), Query Frame = 1
Query:    1 VHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKC----DITESSKVSIPTGVSPSQRIKMENFRKKHMTYSYCYDQI 690
            V L LD  TGSGF+S ++Y HGF+S+ IKLPADYTAGVVVAFY SNGD+FEK HDE+D EFLGNI+GK WR QTN+YGNGST  GREERY LWFDPS +FH+YSILWT  +IIF++D +PIRE  R  +MG D+PAKPM+LYATIWD SDWAT+GGKY+ NYK+AP+V EF  F L GCS DPI++    C    D  ES   S    ++  QR  M  FR++ M YSYCYD +
Sbjct:   54 VRLLLDRYTGSGFISSNMYQHGFYSSMIKLPADYTAGVVVAFYTSNGDVFEKTHDELDIEFLGNIKGKPWRFQTNLYGNGSTHRGREERYRLWFDPSKEFHRYSILWTPHKIIFWVDDVPIREVIRNDAMGADYPAKPMALYATIWDASDWATSGGKYKANYKFAPFVAEFKSFSLDGCSVDPIQEVPMDCSDSVDFLESQDYS---SINSHQRAAMRRFRQRFMYYSYCYDTL 284          
BLAST of FC923402 vs. ExPASy Swiss-Prot
Match: XTH29_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 29 OS=Arabidopsis thaliana GN=XTH29 PE=2 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 7.812e-78
Identity = 136/242 (56.20%), Postives = 174/242 (71.90%), Query Frame = 1
Query:    1 VHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFD---PIEQTSS--------KCDITESSKVSIP-TGVSPSQRIKMENFRKKHMTYSYCYDQI 690
            V L LD+ TGSGF+S  +Y HGFFS+ IKLP  YTAG+VVAFY SNGD+F K+HDE+D EFLGN+ GK WR QTN+YGNGST+ GREERY LWFDPS +FH+YSILWT ++IIF++D +PIRE  R   M GD+P KPMSLYATIWD S WAT+GGK+ V+Y ++P+V+EF D  L GC+     P E  ++         C +++   +S   + +SP Q   M  FR+++M YSYCYD I
Sbjct:   62 VRLLLDKYTGSGFISSSMYQHGFFSSLIKLPGAYTAGIVVAFYTSNGDVFVKDHDELDIEFLGNLEGKPWRFQTNMYGNGSTNRGREERYRLWFDPSKEFHRYSILWTPTKIIFWVDDVPIREILRKEEMNGDYPQKPMSLYATIWDASSWATSGGKFGVDYTFSPFVSEFKDIALDGCNVSDSFPGENNNNNIGNYNNINCSVSDQFLMSNDYSTISPKQATAMRRFRERYMYYSYCYDTI 303          
BLAST of FC923402 vs. ExPASy Swiss-Prot
Match: XTH33_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 33 OS=Arabidopsis thaliana GN=XTH33 PE=2 SV=2)

HSP 1 Score: 234.958 bits (598), Expect = 2.982e-61
Identity = 112/235 (47.66%), Postives = 152/235 (64.68%), Query Frame = 1
Query:    7 LSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQT-SSKCDITESSKVSIP-------TGVSPSQRIKMENFRKKHMTYSYCYDQ 687
            L+LD+ +G+G VS + Y +GFFSA +KLPA + +GVVVAFY+SN + + K+HDEID E LG  R  +W IQTN+Y NGST  GREE++  WFDP+  FH Y+++W     +F +D IP+R+F    +    +P+KPMSLY T+WDGS+WAT GGKY VNYKYAP+V   +D  L GCS +    T S  C  +  S  S+          +S +Q   M+  R+K M YSYC D+
Sbjct:   65 LTLDKSSGAGLVSKNKYHYGFFSARLKLPAGFASGVVVAFYLSNAETYPKSHDEIDIELLGRSRRDDWTIQTNVYANGSTRTGREEKFYFWFDPTQAFHDYTLIWNSHHTVFLVDNIPVRQFPNRGAFTSAYPSKPMSLYVTVWDGSEWATKGGKYPVNYKYAPFVVSVADVELSGCSVNNGSSTGSGPCTKSGGSISSLDPVDGQDFATLSKNQINAMDWARRKLMFYSYCSDK 299          
BLAST of FC923402 vs. ExPASy Swiss-Prot
Match: XTH2_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 2 OS=Arabidopsis thaliana GN=XTH2 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 3.904e-53
Identity = 105/231 (45.45%), Postives = 144/231 (62.34%), Query Frame = 1
Query:    1 VHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYM-SNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDITES-SKVSIPTGVSPSQRIKMENFRKKHMTYSYCYDQ 687
            V LS+D  +GSGF S   Y  GFF   IKLP   +AGVV AFY+ S GD     HDE+DFEFLGN +GK   IQTN++ NG    GRE+++  WFDP+  FH Y ILW   QI+FY+D +PIR FK     G ++P+KPM L A++W+G +WAT+GGK ++N+ YAP+  ++  F  HGC  +     ++ C  T         + +S +++  MEN R K+MTY YC D+
Sbjct:   54 VQLSMDYSSGSGFESKSHYGSGFFQMRIKLPPRDSAGVVTAFYLTSKGD----THDEVDFEFLGNRQGKPIAIQTNVFSNGQG--GREQKFVPWFDPTTSFHTYGILWNPYQIVFYVDKVPIRVFKNIKKSGVNYPSKPMQLVASLWNGENWATSGGKEKINWAYAPFKAQYQGFSDHGCHVNGQSNNANVCGSTRYWWNTRTYSQLSANEQKVMENVRAKYMTYDYCSDR 278          
BLAST of FC923402 vs. ExPASy Swiss-Prot
Match: XTH1_ARATH (Putative xyloglucan endotransglucosylase/hydrolase protein 1 OS=Arabidopsis thaliana GN=XTH1 PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.175e-49
Identity = 102/234 (43.59%), Postives = 144/234 (61.54%), Query Frame = 1
Query:    1 VHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDITESSKVSIPTG----VSPSQRIKMENFRKKHMTYSYCYDQI 690
            V LSLD  +GSGF S + Y  GFF   IK+P   T+GVV AFY+++       HDE+DFEFLGN  GK   +QTN++ NG  +  RE++  LWFDPS DFH Y+ILW   QI+ Y+D IP+R FK T S G ++P+KPM +  ++W+G +WAT+GGK ++N+  AP+   F  F   GC       T+++ +   SS     TG    +S S++    N R+K+M Y YC D++
Sbjct:   61 VQLSLDHSSGSGFESKNHYESGFFQIRIKVPPKDTSGVVTAFYLTSKG---NTHDEVDFEFLGNKEGK-LAVQTNVFTNGKGN--REQKLALWFDPSKDFHTYAILWNPYQIVLYVDNIPVRVFKNTTSQGMNYPSKPMQVVVSLWNGENWATDGGKSKINWSLAPFKANFQGFNNSGCF------TNAEKNACGSSAYWWNTGSYSKLSDSEQKAYTNVRQKYMNYDYCSDKV 282          
BLAST of FC923402 vs. ExPASy Swiss-Prot
Match: XTH3_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 3 OS=Arabidopsis thaliana GN=XTH3 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.619e-49
Identity = 99/233 (42.49%), Postives = 141/233 (60.52%), Query Frame = 1
Query:    1 VHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDITESSKVSIPTG----VSPSQRIKMENFRKKHMTYSYCYDQ 687
            V L +D+ +G GF S D Y  G F   IK+P+  T G+V AFY+++       HDEIDFEFLGN  GK   +QTN++ NG  +  REER+ LWF+P+  +H Y +LW   QI+FY+D IPIR +K     G  +P+KPM + A++W+G DWAT+GG+ +VN+ Y+P++  F DF L GC+ D        C   ESS      G    +S +++   E+ R K+M Y YC D+
Sbjct:   57 VDLYMDQSSGGGFESKDAYGSGLFEMRIKVPSGNTGGIVTAFYLTSKG---GGHDEIDFEFLGNNNGKPVTLQTNLFLNGEGN--REERFLLWFNPTKHYHTYGLLWNPYQIVFYVDNIPIRVYKN--ENGVSYPSKPMQVEASLWNGDDWATDGGRTKVNWSYSPFIAHFRDFALSGCNIDGRSNNVGAC---ESSNYWWNAGNYQRLSGNEQKLYEHVRSKYMNYDYCTDR 279          
BLAST of FC923402 vs. ExPASy Swiss-Prot
Match: XTH31_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 31 OS=Arabidopsis thaliana GN=XTH31 PE=2 SV=2)

HSP 1 Score: 194.897 bits (494), Expect = 3.420e-49
Identity = 97/231 (41.99%), Postives = 140/231 (60.61%), Query Frame = 1
Query:    1 VHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGS---TSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDITESSKVSIPTGVSPSQRIKMENFRKKHMTYSYCYD 684
            V L LD+ TGSGF S   Y  G+F ASIKL   +TAGV  + Y+SN      +HDE+D EFLG   GK + +QTN++  GS     IGRE ++ LWFDP+ DFH Y+ILW  +QI+F++D +PIR + R       FP +PM +Y +IWD SDWAT  G+ + +Y+Y P+V ++ +F L GC+ D    +SS C     + +    G+S  Q   +   ++  + Y+YC+D
Sbjct:   59 VTLWLDKSTGSGFKSLRPYRSGYFGASIKLQPGFTAGVDTSLYLSNNQEHPGDHDEVDIEFLGTTPGKPYSLQTNVFVRGSGDRNVIGREMKFTLWFDPTQDFHHYAILWNPNQIVFFVDDVPIRTYNRKNE--AIFPTRPMWVYGSIWDASDWATENGRIKADYRYQPFVAKYKNFKLAGCTAD----SSSSCRPPSPAPMR-NRGLSRQQMAALTWAQRNFLVYNYCHD 282          
BLAST of FC923402 vs. ExPASy Swiss-Prot
Match: XTH32_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 32 OS=Arabidopsis thaliana GN=XTH32 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.877e-47
Identity = 98/228 (42.98%), Postives = 138/228 (60.53%), Query Frame = 1
Query:   13 LDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTS---IGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREF-KRTASMGGDFPAKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDITESSKVSIPTGVSPSQRIKMENFRKKHMTYSYCYD 684
            LD  +GSGF S   +  G+F A+IKL   YTAGV+ + Y+SN +     HDE+D EFLG   GK + +QTN+Y  GS     IGRE ++ LWFDP+ DFH Y+ILW+  +IIF +D IPIR + K++AS    FP +PM LY +IWD S WAT  GKY+ +YKY P+  ++++F   GC+      +S++C    +S      G++  Q   M   +   M Y+YC D
Sbjct:   67 LDRTSGSGFKSVKPFRSGYFGANIKLQPGYTAGVITSLYLSNNEAHPGFHDEVDIEFLGTTFGKPYTLQTNVYIRGSGDGKIIGREMKFRLWFDPTKDFHHYAILWSPREIIFLVDDIPIRRYPKKSAS---TFPLRPMWLYGSIWDASSWATEDGKYKADYKYQPFTAKYTNFKALGCT----AYSSARCYPLSASPYR-SGGLTRQQHQAMRWVQTHSMVYNYCKD 286          
The following BLAST results are available for this feature:
BLAST of FC923402 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
XTH28_ARATH3.150e-10373.91Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH27_ARATH1.197e-10275.11Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH30_ARATH5.967e-8662.82Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH29_ARATH7.812e-7856.20Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH33_ARATH2.982e-6147.66Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH2_ARATH3.904e-5345.45Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH1_ARATH1.175e-4943.59Putative xyloglucan endotransglucosylase/hydrolase... [more]
XTH3_ARATH2.619e-4942.49Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH31_ARATH3.420e-4941.99Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH32_ARATH1.877e-4742.98Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionC31704F06EF StrClemenN Citrus clementina cDNA clone C31704F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923402 ID=FC923402; Name=FC923402; organism=Citrus clementina; type=EST; length=691bp
GTTCATTTATCTCTAGATGAAAGAACAGGGTCTGGATTTGTGTCACATGA
CCTCTATCTTCATGGTTTCTTCAGTGCTTCAATAAAGTTGCCTGCTGATT
ATACTGCCGGCGTTGTTGTTGCCTTCTATATGTCAAATGGTGACATGTTT
GAGAAGAATCATGATGAAATAGACTTTGAGTTCTTGGGTAATATTAGAGG
CAAAAATTGGAGGATTCAGACTAATATTTATGGCAATGGAAGCACCAGCA
TCGGAAGAGAAGAGAGATACAATCTCTGGTTTGATCCTTCTGATGATTTC
CATCAGTACAGTATTCTCTGGACTGATTCCCAGATCATATTTTATATAGA
CGGTATTCCAATTAGGGAGTTTAAGAGAACTGCATCTATGGGAGGAGATT
TTCCTGCTAAGCCGATGTCTTTGTACGCCACAATCTGGGATGGCTCTGAT
TGGGCTACAAATGGTGGCAAATACCGAGTGAACTACAAATATGCTCCCTA
TGTGACTGAATTCTCTGACTTCGTACTCCACGGATGTTCATTTGATCCTA
TTGAGCAAACTTCTTCCAAGTGTGACATAACCGAAAGTTCCAAAGTATCA
ATCCCTACTGGCGTCTCCCCATCACAGAGAATTAAAATGGAAAACTTTAG
GAAGAAGCATATGACCTATTCCTACTGCTATGACCAAATTC
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