FC923403

Overview
NameFC923403
Unique NameFC923403
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14457 contig Ccv1_Contig14457:1..707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923403 vs. ExPASy Swiss-Prot
Match: VDAC2_SOLTU (Mitochondrial outer membrane protein porin of 36 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 7.362e-40
Identity = 76/166 (45.78%), Postives = 114/166 (68.67%), Query Frame = 1
Query:  142 MGSNPAPFSDVGKRAKDLLNKDYDFGHKFTLSVPSSTGLGLSATGLKKDEIFIGDINSVYKSGNTTVDVKVDTYSSVSTKVTMVDILPSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSSIGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNS 639
            M   P  +SD+GK+A+DLL +DY   HKFT++  S+TG+ ++A+GLKK E+F+ D+++  K+ N T DVKVDT S+V T +T+ +  P  K   SF +PD KSGK++LQYLH +A I++SIGL  +PL+  S   G+  + LG ++ FDTA+ +F K  AG+  +S
Sbjct:    1 MVKGPGLYSDIGKKARDLLYRDYVSDHKFTVTTYSTTGVAITASGLKKGELFLADVSTQLKNKNITTDVKVDTNSNVYTTITVDEPAPGLKTIFSFVVPDQKSGKVELQYLHEYAGINTSIGLTASPLVNFSGVAGNNTVALGTDLSFDTATGNFTKCNAGLSFSS 166          

HSP 2 Score: 25.0238 bits (53), Expect = 7.362e-40
Identity = 11/21 (52.38%), Postives = 12/21 (57.14%), Query Frame = 3
Query:  642 DFSAALLLADKGQATQASYIH 704
            D  A+L L DKG    ASY H
Sbjct:  168 DLIASLALNDKGDTVSASYYH 188          
BLAST of FC923403 vs. ExPASy Swiss-Prot
Match: VDAC1_SOLTU (Mitochondrial outer membrane protein porin of 34 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 2.398e-37
Identity = 69/166 (41.57%), Postives = 111/166 (66.87%), Query Frame = 1
Query:  142 MGSNPAPFSDVGKRAKDLLNKDYDFGHKFTLSVPSSTGLGLSATGLKKDEIFIGDINSVYKSGNTTVDVKVDTYSSVSTKVTMVDILPSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSSIGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNS 639
            MG  P  ++++GK+A+DLL KDY   HKF+++  S TG+ ++++G KK ++F+ D+N+  K+ N T D+KVDT S++ T +T+ +  P  K  LSFR+PD +SGKL++QYLH +A I +S+GL   P++  S  +G+  + LG +V FDT +  F K  AG+   +
Sbjct:    1 MGKGPGLYTEIGKKARDLLYKDYQSDHKFSITTYSPTGVVITSSGSKKGDLFLADVNTQLKNKNVTTDIKVDTNSNLFTTITVDEAAPGLKTILSFRVPDQRSGKLEVQYLHDYAGICTSVGLTANPIVNFSGVVGTNIIALGTDVSFDTKTGDFTKCNAGLSFTN 166          
BLAST of FC923403 vs. ExPASy Swiss-Prot
Match: VDAC_PEA (Outer plastidial membrane protein porin OS=Pisum sativum GN=POR1 PE=1 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 2.057e-36
Identity = 70/162 (43.21%), Postives = 106/162 (65.43%), Query Frame = 1
Query:  142 MGSNPAPFSDVGKRAKDLLNKDYDFGHKFTLSVPSSTGLGLSATGLKKDEIFIGDINSVYKSGNTTVDVKVDTYSSVSTKVTMVDILPSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSSIGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGI 627
            M   P  ++D+GK+A+DLL KDY    KFT+S  S TG+ ++++G KK E+F+GD+N+  K+ N T D+KVDT S++ T +T+ +  P  KA LSF++P+  SGK++LQYLH +A I SS+GL   P++  S+ IG+  L  G ++ FDT      K  A +
Sbjct:    1 MVKGPGLYTDIGKKARDLLYKDYHSDKKFTISTYSPTGVAITSSGTKKGELFLGDVNTQLKNKNITTDIKVDTNSNLFTTITVNEPAPGVKAILSFKVPEQTSGKVELQYLHEYAGISSSVGLKANPIVNFSSVIGTNALAFGADISFDTKLGELTKSNAAV 162          

HSP 2 Score: 21.1718 bits (43), Expect = 2.057e-36
Identity = 9/21 (42.86%), Postives = 11/21 (52.38%), Query Frame = 3
Query:  642 DFSAALLLADKGQATQASYIH 704
            D   +L L +KG    ASY H
Sbjct:  168 DLIGSLTLNEKGDLLSASYYH 188          
BLAST of FC923403 vs. ExPASy Swiss-Prot
Match: VDAC1_ORYSJ (Mitochondrial outer membrane protein porin OS=Oryza sativa subsp. japonica GN=VDAC1 PE=1 SV=3)

HSP 1 Score: 149.828 bits (377), Expect = 5.924e-36
Identity = 69/162 (42.59%), Postives = 109/162 (67.28%), Query Frame = 1
Query:  154 PAPFSDVGKRAKDLLNKDYDFGHKFTLSVPSSTGLGLSATGLKKDEIFIGDINSVYKSGNTTVDVKVDTYSSVSTKVTMVDILPSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSSIGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNS 639
            P  + ++GK+A+DLL +DY   HKFTL+  +S G+ ++AT  KK ++  G+I S  K+ N TVDVK ++ S+V T VT+ ++ P  K+ LSF +PD +SGK +LQY H +A + +SIGL  +P++ LS+  G+K L +G +V  DTA+ +  KY AG+  ++
Sbjct:    4 PGLYPEIGKKARDLLYRDYQTDHKFTLTTYTSNGVAITATSTKKADLIFGEIQSQIKNKNITVDVKANSDSNVVTTVTVDELTPGLKSILSFAVPDQRSGKFELQYSHDYAGVSASIGLTASPVVNLSSVFGTKALAVGADVSLDTATGNLTKYNAGLSFSN 165          

HSP 2 Score: 21.9422 bits (45), Expect = 5.924e-36
Identity = 10/21 (47.62%), Postives = 13/21 (61.90%), Query Frame = 3
Query:  642 DFSAALLLADKGQATQASYIH 704
            D  A+L L +KG +  ASY H
Sbjct:  167 DLIASLNLNNKGDSLTASYYH 187          
BLAST of FC923403 vs. ExPASy Swiss-Prot
Match: VDAC1_WHEAT (Mitochondrial outer membrane porin OS=Triticum aestivum GN=VDAC1 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 2.222e-35
Identity = 73/164 (44.51%), Postives = 107/164 (65.24%), Query Frame = 1
Query:  154 PAPFSDVGKRAKDLLNKDYDFGHKFTLSVPSSTGLGLSATGLKKDEIFIGDINSVYKSGNTTVDVKVDTYSSVSTKVTMVDIL-PSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSSIGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNSQ 642
            P  +S +GK+AKDLL +DY   HKFTL+  ++ G  ++AT  KK ++ +G+I S  K+ N TVDVK ++ S+V T +T  D+  P  K  LSF +PD KSGK++LQYLH +A I++SIGL   P++ LS   G+  L +G +V  DTA+ +F KY A +   +Q
Sbjct:    4 PGLYSGIGKKAKDLLYRDYQTDHKFTLTTYTANGPAITATSTKKADLTVGEIQSQIKNKNITVDVKANSASNVITTITADDLAAPGLKTILSFAVPDQKSGKVELQYLHDYAGINASIGLTANPVVNLSGAFGTSALAVGADVSLDTATKNFAKYNAALSYTNQ 167          

HSP 2 Score: 21.9422 bits (45), Expect = 2.222e-35
Identity = 10/21 (47.62%), Postives = 13/21 (61.90%), Query Frame = 3
Query:  642 DFSAALLLADKGQATQASYIH 704
            D  A+L L +KG +  ASY H
Sbjct:  168 DLIASLNLNNKGDSLTASYYH 188          
BLAST of FC923403 vs. ExPASy Swiss-Prot
Match: VDAC2_ARATH (Mitochondrial outer membrane protein porin 2 OS=Arabidopsis thaliana GN=HSR2 PE=1 SV=3)

HSP 1 Score: 136.732 bits (343), Expect = 7.441e-33
Identity = 63/161 (39.13%), Postives = 101/161 (62.73%), Query Frame = 1
Query:  142 MGSNPAPFSDVGKRAKDLLNKDYDFGHKFTLSVPSSTGLGLSATGLKKDEIFIGDINSVYKSGNTTVDVKVDTYSSVSTKVTMVDILPSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSSIGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAG 624
            M   P  ++++GK+A+DLL +DY    KF+++  SSTG+ ++ TG  K  +F+GD+ +  K+ N T DVKV T SS+ T +T  +  P  K  +  ++PDHKSGK ++QY H +A I +S+G   TP++  S  +G+  L LG +V ++T S +F  + AG
Sbjct:    1 MVKGPGLYTEIGKKARDLLYRDYQGDQKFSVTTYSSTGVAITTTGTNKGSLFLGDVATQVKNNNFTADVKVSTDSSLLTTLTFDEPAPGLKVIVQAKLPDHKSGKAEVQYFHDYAGISTSVGFTATPIVNFSGVVGTNGLSLGTDVAYNTESGNFKHFNAG 161          

HSP 2 Score: 24.6386 bits (52), Expect = 7.441e-33
Identity = 10/19 (52.63%), Postives = 14/19 (73.68%), Query Frame = 3
Query:  642 DFSAALLLADKGQATQASY 698
            D +A+L+L DKG+   ASY
Sbjct:  168 DLTASLILNDKGEKLNASY 186          
BLAST of FC923403 vs. ExPASy Swiss-Prot
Match: VDAC_MAIZE (Outer plastidial membrane protein porin OS=Zea mays GN=POR1 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.140e-32
Identity = 64/160 (40.00%), Postives = 105/160 (65.62%), Query Frame = 1
Query:  163 FSDVGKRAKDLLNKDYDFGHKFTLSVPSSTGLGLSATGLKKDEIFIGDINSVYKSGNTTVDVKVDTYSSVSTKVTMVDI-LPSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSSIGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNS 639
            ++D+GK+ +DLL KDY+   KF L+  S  G+ ++A G +K+E   G++++  K+   TVDVK ++ S + T +T+ +   P  K+ ++  +PD +SGKL+ QYLH +A +++S+GLN  P++ LS   GSK L +G +V FDTA++ F KY A + L S
Sbjct:    8 YTDIGKKTRDLLYKDYNTHQKFCLTTSSPNGVAITAAGTRKNESIFGELHTQIKNKKLTVDVKANSESDLLTTITVDEFGTPGLKSIINLVVPDQRSGKLEFQYLHEYAGVNASVGLNSNPMVNLSGAFGSKALSVGVDVSFDTATSDFTKYNAALSLTS 167          

HSP 2 Score: 22.7126 bits (47), Expect = 2.140e-32
Identity = 11/25 (44.00%), Postives = 13/25 (52.00%), Query Frame = 3
Query:  630 LEQPDFSAALLLADKGQATQASYIH 704
            L  PD  A+L L + G    ASY H
Sbjct:  165 LTSPDLIASLHLNNHGDTLVASYYH 189          
BLAST of FC923403 vs. ExPASy Swiss-Prot
Match: VDAC1_ARATH (Mitochondrial outer membrane protein porin 1 OS=Arabidopsis thaliana GN=At3g01280 PE=1 SV=3)

HSP 1 Score: 131.339 bits (329), Expect = 8.634e-31
Identity = 62/167 (37.13%), Postives = 101/167 (60.48%), Query Frame = 1
Query:  142 MGSNPAPFSDVGKRAKDLLNKDYDFGHKFTLSVPSSTGLGLSATGLKKDEIFIGDINSVYKSGNTTVDVKVDTYSSVSTKVTMVDILPSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSSIGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNSQ 642
            M   P  ++++GK+A+DLL KD++   KF+++  S  G+ +++TG KK ++ +GD+    +  N T D+KV T S+     T+ +  P  ++  SF++PD  SGK++LQYLH +A I +S+GL   P +  S  IGS  L +G +V FDT S +F K  AG+    +
Sbjct:    1 MVKGPGLYTEIGKKARDLLYKDHNSDQKFSITTFSPAGVAITSTGTKKGDLLLGDVAFQSRRKNITTDLKVCTDSTFLITATVDEAAPGLRSIFSFKVPDQNSGKVELQYLHEYAGISTSMGLTQNPTVNFSGVIGSNVLAVGTDVSFDTKSGNFTKINAGLSFTKE 167          

HSP 2 Score: 23.0978 bits (48), Expect = 8.634e-31
Identity = 10/21 (47.62%), Postives = 12/21 (57.14%), Query Frame = 3
Query:  642 DFSAALLLADKGQATQASYIH 704
            D  A+L + DKG    ASY H
Sbjct:  168 DLIASLTVNDKGDLLNASYYH 188          
The following BLAST results are available for this feature:
BLAST of FC923403 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
VDAC2_SOLTU7.362e-4045.78Mitochondrial outer membrane protein porin of 36 k... [more]
VDAC1_SOLTU2.398e-3741.57Mitochondrial outer membrane protein porin of 34 k... [more]
VDAC_PEA2.057e-3643.21Outer plastidial membrane protein porin OS=Pisum s... [more]
VDAC1_ORYSJ5.924e-3642.59Mitochondrial outer membrane protein porin OS=Oryz... [more]
VDAC1_WHEAT2.222e-3544.51Mitochondrial outer membrane porin OS=Triticum aes... [more]
VDAC2_ARATH7.441e-3339.13Mitochondrial outer membrane protein porin 2 OS=Ar... [more]
VDAC_MAIZE2.140e-3240.00Outer plastidial membrane protein porin OS=Zea may... [more]
VDAC1_ARATH8.634e-3137.13Mitochondrial outer membrane protein porin 1 OS=Ar... [more]
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Properties
Property NameValue
Genbank descriptionC31704F07EF StrClemenN Citrus clementina cDNA clone C31704F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923403 ID=FC923403; Name=FC923403; organism=Citrus clementina; type=EST; length=706bp
CCGGCCTTGGTGAGAAAAAAAGGGAAAAAATACACTGCCAGTGCAAAATA
TCTTTTTCTCGCAAGCAAGCTGTCGCCTGAAGCGGTCCGAACAGCCGCTT
TTCTCCATTATTACAGTGTATTTTATCGTTTCTGAGAAGAGATGGGGAGC
AATCCGGCACCGTTTTCTGATGTTGGCAAGAGAGCCAAAGACCTCTTGAA
CAAAGATTACGATTTTGGGCACAAGTTTACTCTCTCGGTGCCAAGCTCCA
CTGGCCTGGGACTTTCAGCAACAGGTCTGAAGAAGGATGAAATTTTTATT
GGTGACATAAATAGTGTGTACAAGAGTGGAAATACTACTGTGGATGTGAA
AGTTGATACTTATTCTAGTGTATCTACAAAAGTAACTATGGTTGATATCT
TGCCATCTACCAAAGCAGCTCTGAGCTTCAGAATACCAGATCACAAGTCT
GGCAAGTTGGATCTCCAGTACCTTCATCCCCATGCTGCCATTGATTCCAG
TATTGGCCTTAATCCAACCCCACTTTTGGAGCTATCAGCAACAATTGGAA
GTAAAGAGCTTGTTTTAGGTGGTGAAGTCGGATTTGATACAGCTTCTGCT
TCATTCATTAAGTACACTGCTGGGATTGGCTTGAACAGCCAGATTTCTCT
GCTGCCCTCTTACTGGCGGATAAGGGACAGGCNACTCAGGCATCCTACAT
TCATGC
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