FC923408

Overview
NameFC923408
Unique NameFC923408
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length630
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15267 contig Ccv1_Contig15267:36..665. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923408 vs. ExPASy Swiss-Prot
Match: PSD12_PONAB (26S proteasome non-ATPase regulatory subunit 12 OS=Pongo abelii GN=PSMD12 PE=2 SV=3)

HSP 1 Score: 160.614 bits (405), Expect = 5.951e-39
Identity = 78/174 (44.83%), Postives = 115/174 (66.09%), Query Frame = 2
Query:  107 SKMEGRGNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXXXYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMANTEKIAFILEQVRLCLDRQDYVRAQXL 628
            +K+   G L+  ++ LL+ EKQ R + D+  T + +  ++++C+EAK+W  LNE I+ LSK+R QLK            Y+++  DL  ++ LI TL  V+ GKIYVEIERARL K LA IKE+ G + EAA ++QE+ VET+G+M   E++ FILEQ+RLCL  +DY+R Q +
Sbjct:   32 AKLAKEGRLQEVIETLLSLEKQTRTASDMVSTSRILVAVVKMCYEAKEWDLLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPIKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKERVEFILEQMRLCLAVKDYIRTQII 205          
BLAST of FC923408 vs. ExPASy Swiss-Prot
Match: PSD12_HUMAN (26S proteasome non-ATPase regulatory subunit 12 OS=Homo sapiens GN=PSMD12 PE=1 SV=3)

HSP 1 Score: 160.614 bits (405), Expect = 5.951e-39
Identity = 78/174 (44.83%), Postives = 115/174 (66.09%), Query Frame = 2
Query:  107 SKMEGRGNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXXXYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMANTEKIAFILEQVRLCLDRQDYVRAQXL 628
            +K+   G L+  ++ LL+ EKQ R + D+  T + +  ++++C+EAK+W  LNE I+ LSK+R QLK            Y+++  DL  ++ LI TL  V+ GKIYVEIERARL K LA IKE+ G + EAA ++QE+ VET+G+M   E++ FILEQ+RLCL  +DY+R Q +
Sbjct:   32 AKLAKEGRLQEVIETLLSLEKQTRTASDMVSTSRILVAVVKMCYEAKEWDLLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPIKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKERVEFILEQMRLCLAVKDYIRTQII 205          
BLAST of FC923408 vs. ExPASy Swiss-Prot
Match: PSD12_BOVIN (26S proteasome non-ATPase regulatory subunit 12 OS=Bos taurus GN=PSMD12 PE=2 SV=3)

HSP 1 Score: 160.614 bits (405), Expect = 5.951e-39
Identity = 79/173 (45.66%), Postives = 114/173 (65.90%), Query Frame = 2
Query:  110 KMEGRGNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXXXYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMANTEKIAFILEQVRLCLDRQDYVRAQXL 628
            K+   G L+  ++ LL+ EKQ R + D+  T + +  I+++C+EAK+W  LNE I+ LSK+R QLK            Y+++  DL  ++ LI TL  V+ GKIYVEIERARL K LA IKE+ G + EAA ++QE+ VET+G+M   E++ FILEQ+RLCL  +DY+R Q +
Sbjct:   33 KLAKEGRLQEVIETLLSLEKQTRTASDMVSTSRILVAIVKMCYEAKEWDLLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPIKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKERVEFILEQMRLCLAVKDYIRTQII 205          
BLAST of FC923408 vs. ExPASy Swiss-Prot
Match: PSD12_MOUSE (26S proteasome non-ATPase regulatory subunit 12 OS=Mus musculus GN=Psmd12 PE=2 SV=3)

HSP 1 Score: 157.918 bits (398), Expect = 3.857e-38
Identity = 77/173 (44.51%), Postives = 113/173 (65.32%), Query Frame = 2
Query:  110 KMEGRGNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXXXYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMANTEKIAFILEQVRLCLDRQDYVRAQXL 628
            K+   G L+  ++ LL+ EKQ R + D+  T + +  ++++C+EAK+W   NE I+ LSK+R QLK            Y+++  DL  ++ LI TL  V+ GKIYVEIERARL K LA IKE+ G + EAA ++QE+ VET+G+M   E++ FILEQ+RLCL  +DY+R Q +
Sbjct:   33 KLAKEGRLQEVIETLLSLEKQTRTASDMVSTSRILVAVVKMCYEAKEWDLHNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPVKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKERVEFILEQMRLCLAVKDYIRTQII 205          
BLAST of FC923408 vs. ExPASy Swiss-Prot
Match: PSD12_DICDI (26S proteasome non-ATPase regulatory subunit 12 OS=Dictyostelium discoideum GN=psmD12 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 5.570e-37
Identity = 82/185 (44.32%), Postives = 118/185 (63.78%), Query Frame = 2
Query:   89 SPAIIKSKMEGR-----GNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXXXYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMANTEKIAFILEQVRLCLDRQDYVRAQXL 628
            SP   KS  E R     G L   ++ LL TEKQ R + D   T K   EI++LC+EA     +NE++V LSK+RGQL+            Y+DQ  D+  ++ELI TL ++S GKI+VE ERARL K L+KIKE++G IA AA ++Q++ VET+G M   EKI F ++Q+R+C++ +D++RAQ +
Sbjct:   22 SPIADKSCKENRELAKSGKLIEAIENLLITEKQCRQAEDSPSTSKIAAEIIKLCYEAGRLDLVNEKLVLLSKRRGQLRPAIKAIVQESMVYVDQITDMKQKLELIDTLRTISDGKIFVENERARLTKTLSKIKEDEGDIASAAKILQDLQVETYGTMEKREKITFFIDQMRICMNNKDFIRAQLI 206          
BLAST of FC923408 vs. ExPASy Swiss-Prot
Match: RPN5_SCHPO (26S proteasome regulatory subunit rpn5 OS=Schizosaccharomyces pombe GN=rpn5a PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.790e-31
Identity = 74/164 (45.12%), Postives = 105/164 (64.02%), Query Frame = 2
Query:  128 NLEAQVDQLLNTEKQMRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXXXYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMANTEKIAFILEQVRLCLDRQDYVRA 619
            +++A +++LL  EKQ+R + D +   K +  I  L F A D++ LNEQ+V+L KK GQLK            Y+    DL T+I LI+TL +++ GKIYVE+ERARL + L++IKEEQG I  A +++    VET+G+    EK+AFIL+QVRL L R DY  A
Sbjct:   27 DIDANLEKLLIFEKQVRQASDTSTNTKVLIYIADLLFRAGDFQGLNEQLVSLFKKHGQLKQSMTSLVQHVMTYLPGIDDLKTKINLIETLRTITDGKIYVEVERARLTQLLSQIKEEQGDIKSAQEILCNEPVETYGSFDLKEKVAFILDQVRLFLLRSDYYMA 190          
BLAST of FC923408 vs. ExPASy Swiss-Prot
Match: RPN5_YEAST (26S proteasome regulatory subunit RPN5 OS=Saccharomyces cerevisiae GN=RPN5 PE=1 SV=3)

HSP 1 Score: 130.954 bits (328), Expect = 5.049e-30
Identity = 72/171 (42.11%), Postives = 108/171 (63.16%), Query Frame = 2
Query:  122 RGNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXXXYIDQTP--DLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMANTEKIAFILEQVRLCLDRQDYVRAQXL 628
            + +  + +DQLL  EK+ R + D+A +K+ + +I+ L      W  LNEQ+  LSKK GQLK            Y+  +   DL+TRI +I+T+  V+  KI+VE+ERAR+ K L +IK+E+G I EAAD++ E+ VET+G+M  +EKI FILEQ+ L + + DY +A  L
Sbjct:   29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVL 199          
The following BLAST results are available for this feature:
BLAST of FC923408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
PSD12_PONAB5.951e-3944.8326S proteasome non-ATPase regulatory subunit 12 OS... [more]
PSD12_HUMAN5.951e-3944.8326S proteasome non-ATPase regulatory subunit 12 OS... [more]
PSD12_BOVIN5.951e-3945.6626S proteasome non-ATPase regulatory subunit 12 OS... [more]
PSD12_MOUSE3.857e-3844.5126S proteasome non-ATPase regulatory subunit 12 OS... [more]
PSD12_DICDI5.570e-3744.3226S proteasome non-ATPase regulatory subunit 12 OS... [more]
RPN5_SCHPO7.790e-3145.1226S proteasome regulatory subunit rpn5 OS=Schizosa... [more]
RPN5_YEAST5.049e-3042.1126S proteasome regulatory subunit RPN5 OS=Saccharo... [more]
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Properties
Property NameValue
Genbank descriptionC31704F12EF StrClemenN Citrus clementina cDNA clone C31704F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923408 ID=FC923408; Name=FC923408; organism=Citrus clementina; type=EST; length=630bp
GAATTCTTCACCGAATCAGAATCCCTCTCTGAACTCACTCTCTGAAAATT
AGGGTTTTTTCCCCCTTATTTAACAATTTTGGGCATAATCTCCGGCGATT
ATCAAATCGAAGATGGAGGGTAGAGGCAATTTGGAGGCGCAAGTAGATCA
GCTTTTGAATACCGAGAAGCAGATGAGATTATCCGGTGACGTGGCCGGCA
CCAAGAAGGCGGTGACGGAAATTTTGCAGCTTTGCTTTGAAGCTAAAGAC
TGGAAGACTCTCAATGAACAGATTGTTAATCTTTCCAAGAAACGCGGTCA
ACTCAAGCAGGCTGTAACTGCAATGGTCCAGCAAGCAATGCAGTACATCG
ATCAGACGCCAGATCTTGATACTCGTATAGAGCTCATCAAAACACTAAAT
AGTGTCTCTGCAGGGAAGATATATGTTGAAATTGAGAGGGCAAGGTTGAT
TAAAAAACTTGCAAAGATTAAGGAAGAACAAGGGCTTATAGCGGAAGCTG
CAGATCTGATGCAAGAAGTGGCTGTGGAGACATTTGGTGCTATGGCAAAT
ACTGAGAAAATCGCCTTCATCCTTGAACAAGTCCGTCTGTGCCTAGACCG
CCAAGATTATGTCCGTGCACAANTTCTTTC
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