FC923408
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC923408 vs. ExPASy Swiss-Prot
Match: PSD12_PONAB (26S proteasome non-ATPase regulatory subunit 12 OS=Pongo abelii GN=PSMD12 PE=2 SV=3) HSP 1 Score: 160.614 bits (405), Expect = 5.951e-39 Identity = 78/174 (44.83%), Postives = 115/174 (66.09%), Query Frame = 2 Query: 107 SKMEGRGNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXXXYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMANTEKIAFILEQVRLCLDRQDYVRAQXL 628 +K+ G L+ ++ LL+ EKQ R + D+ T + + ++++C+EAK+W LNE I+ LSK+R QLK Y+++ DL ++ LI TL V+ GKIYVEIERARL K LA IKE+ G + EAA ++QE+ VET+G+M E++ FILEQ+RLCL +DY+R Q + Sbjct: 32 AKLAKEGRLQEVIETLLSLEKQTRTASDMVSTSRILVAVVKMCYEAKEWDLLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPIKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKERVEFILEQMRLCLAVKDYIRTQII 205
BLAST of FC923408 vs. ExPASy Swiss-Prot
Match: PSD12_HUMAN (26S proteasome non-ATPase regulatory subunit 12 OS=Homo sapiens GN=PSMD12 PE=1 SV=3) HSP 1 Score: 160.614 bits (405), Expect = 5.951e-39 Identity = 78/174 (44.83%), Postives = 115/174 (66.09%), Query Frame = 2 Query: 107 SKMEGRGNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXXXYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMANTEKIAFILEQVRLCLDRQDYVRAQXL 628 +K+ G L+ ++ LL+ EKQ R + D+ T + + ++++C+EAK+W LNE I+ LSK+R QLK Y+++ DL ++ LI TL V+ GKIYVEIERARL K LA IKE+ G + EAA ++QE+ VET+G+M E++ FILEQ+RLCL +DY+R Q + Sbjct: 32 AKLAKEGRLQEVIETLLSLEKQTRTASDMVSTSRILVAVVKMCYEAKEWDLLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPIKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKERVEFILEQMRLCLAVKDYIRTQII 205
BLAST of FC923408 vs. ExPASy Swiss-Prot
Match: PSD12_BOVIN (26S proteasome non-ATPase regulatory subunit 12 OS=Bos taurus GN=PSMD12 PE=2 SV=3) HSP 1 Score: 160.614 bits (405), Expect = 5.951e-39 Identity = 79/173 (45.66%), Postives = 114/173 (65.90%), Query Frame = 2 Query: 110 KMEGRGNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXXXYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMANTEKIAFILEQVRLCLDRQDYVRAQXL 628 K+ G L+ ++ LL+ EKQ R + D+ T + + I+++C+EAK+W LNE I+ LSK+R QLK Y+++ DL ++ LI TL V+ GKIYVEIERARL K LA IKE+ G + EAA ++QE+ VET+G+M E++ FILEQ+RLCL +DY+R Q + Sbjct: 33 KLAKEGRLQEVIETLLSLEKQTRTASDMVSTSRILVAIVKMCYEAKEWDLLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPIKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKERVEFILEQMRLCLAVKDYIRTQII 205
BLAST of FC923408 vs. ExPASy Swiss-Prot
Match: PSD12_MOUSE (26S proteasome non-ATPase regulatory subunit 12 OS=Mus musculus GN=Psmd12 PE=2 SV=3) HSP 1 Score: 157.918 bits (398), Expect = 3.857e-38 Identity = 77/173 (44.51%), Postives = 113/173 (65.32%), Query Frame = 2 Query: 110 KMEGRGNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXXXYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMANTEKIAFILEQVRLCLDRQDYVRAQXL 628 K+ G L+ ++ LL+ EKQ R + D+ T + + ++++C+EAK+W NE I+ LSK+R QLK Y+++ DL ++ LI TL V+ GKIYVEIERARL K LA IKE+ G + EAA ++QE+ VET+G+M E++ FILEQ+RLCL +DY+R Q + Sbjct: 33 KLAKEGRLQEVIETLLSLEKQTRTASDMVSTSRILVAVVKMCYEAKEWDLHNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPVKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKERVEFILEQMRLCLAVKDYIRTQII 205
BLAST of FC923408 vs. ExPASy Swiss-Prot
Match: PSD12_DICDI (26S proteasome non-ATPase regulatory subunit 12 OS=Dictyostelium discoideum GN=psmD12 PE=2 SV=1) HSP 1 Score: 154.066 bits (388), Expect = 5.570e-37 Identity = 82/185 (44.32%), Postives = 118/185 (63.78%), Query Frame = 2 Query: 89 SPAIIKSKMEGR-----GNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXXXYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMANTEKIAFILEQVRLCLDRQDYVRAQXL 628 SP KS E R G L ++ LL TEKQ R + D T K EI++LC+EA +NE++V LSK+RGQL+ Y+DQ D+ ++ELI TL ++S GKI+VE ERARL K L+KIKE++G IA AA ++Q++ VET+G M EKI F ++Q+R+C++ +D++RAQ + Sbjct: 22 SPIADKSCKENRELAKSGKLIEAIENLLITEKQCRQAEDSPSTSKIAAEIIKLCYEAGRLDLVNEKLVLLSKRRGQLRPAIKAIVQESMVYVDQITDMKQKLELIDTLRTISDGKIFVENERARLTKTLSKIKEDEGDIASAAKILQDLQVETYGTMEKREKITFFIDQMRICMNNKDFIRAQLI 206
BLAST of FC923408 vs. ExPASy Swiss-Prot
Match: RPN5_SCHPO (26S proteasome regulatory subunit rpn5 OS=Schizosaccharomyces pombe GN=rpn5a PE=1 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 7.790e-31 Identity = 74/164 (45.12%), Postives = 105/164 (64.02%), Query Frame = 2 Query: 128 NLEAQVDQLLNTEKQMRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXXXYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMANTEKIAFILEQVRLCLDRQDYVRA 619 +++A +++LL EKQ+R + D + K + I L F A D++ LNEQ+V+L KK GQLK Y+ DL T+I LI+TL +++ GKIYVE+ERARL + L++IKEEQG I A +++ VET+G+ EK+AFIL+QVRL L R DY A Sbjct: 27 DIDANLEKLLIFEKQVRQASDTSTNTKVLIYIADLLFRAGDFQGLNEQLVSLFKKHGQLKQSMTSLVQHVMTYLPGIDDLKTKINLIETLRTITDGKIYVEVERARLTQLLSQIKEEQGDIKSAQEILCNEPVETYGSFDLKEKVAFILDQVRLFLLRSDYYMA 190
BLAST of FC923408 vs. ExPASy Swiss-Prot
Match: RPN5_YEAST (26S proteasome regulatory subunit RPN5 OS=Saccharomyces cerevisiae GN=RPN5 PE=1 SV=3) HSP 1 Score: 130.954 bits (328), Expect = 5.049e-30 Identity = 72/171 (42.11%), Postives = 108/171 (63.16%), Query Frame = 2 Query: 122 RGNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXXXYIDQTP--DLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMANTEKIAFILEQVRLCLDRQDYVRAQXL 628 + + + +DQLL EK+ R + D+A +K+ + +I+ L W LNEQ+ LSKK GQLK Y+ + DL+TRI +I+T+ V+ KI+VE+ERAR+ K L +IK+E+G I EAAD++ E+ VET+G+M +EKI FILEQ+ L + + DY +A L Sbjct: 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVL 199 The following BLAST results are available for this feature:
BLAST of FC923408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 7
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC923408 ID=FC923408; Name=FC923408; organism=Citrus clementina; type=EST; length=630bpback to top |