FC923409

Overview
NameFC923409
Unique NameFC923409
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14458 contig Ccv1_Contig14458:1..676. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923409 vs. ExPASy Swiss-Prot
Match: ATP23_CRYNE (Mitochondrial inner membrane protease ATP23 OS=Cryptococcus neoformans GN=ATP23 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.132e-32
Identity = 70/164 (42.68%), Postives = 97/164 (59.15%), Query Frame = 2
Query:  164 QRSLRN--PTVKFLRQHLEKAGCGFGDKFIKAVHCNKKIAGGYVRGEGILVCSNHMNIQDDVNQVIIHELIHAYDECRAANLDWSNCAHHACSEIRAGHLSGDCHYKRELLRGYMKIRGHEQDCVRRRVMKSVIANPYC-SAGAAKDAMEAVCDVCYHDTQPFD 646
            +R L N  P + FL  HL+ AGC F    ++   C +  AGG+    GIL+C +    +  +   + HEL+HA+D CR   +DW N  HHACSEIRA +LSGDC + RE+ RG+       Q CV+RR + SV+ANP C S   A+ A+  V + C+ DT+PFD
Sbjct:   62 KRDLMNYSPMITFLLNHLKLAGCPFPSSAMQCHPCPENRAGGFSPDHGILLCQDRFFNKKHMEDTLAHELVHAFDHCRF-KVDWGNLRHHACSEIRAANLSGDCRFTREVKRGFYAFNKQHQACVKRRAILSVLANPACTSPEMAEKAVNEVWESCFTDTRPFD 224          
BLAST of FC923409 vs. ExPASy Swiss-Prot
Match: ATP23_YARLI (Mitochondrial inner membrane protease ATP23 OS=Yarrowia lipolytica GN=ATP23 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.583e-30
Identity = 66/159 (41.51%), Postives = 94/159 (59.12%), Query Frame = 2
Query:  179 NPTVKFLRQHLEKAGCGFGDKFIKAVHCNKKIAGGYVRGEGILVCSNHMNIQDDVNQVIIHELIHAYDECRAANLDWSNCAHHACSEIRAGHLSGDCHYKRELLRGYMK--IRGHEQDCVRRRVMKSVIANPYCSAGA-AKDAMEAVCDVCYHDTQPFD 646
            +PTV+F++  +EK G       +   HC+   AGG+    GILVC NH+  +  +   + HE++H YD  +   +DW N  HHACSEIRA  LSG+C    EL++G +    RGH Q+C +RR + SV+ANP C   A A   +  V D C++DT+PFD
Sbjct:   90 SPTVRFMKDQIEKIGGDISSNNVFCDHCDDFKAGGFHPKYGILVCQNHVKSRSHLEDTLAHEMVHYYDNTK-FKVDWMNLKHHACSEIRASTLSGECRMMNELMKGKLARLTRGH-QECAKRRAILSVMANPGCKDEAQATQVVNEVWDSCFNDTRPFD 246          
BLAST of FC923409 vs. ExPASy Swiss-Prot
Match: ATP23_XENLA (Mitochondrial inner membrane protease ATP23 homolog OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.881e-29
Identity = 68/174 (39.08%), Postives = 108/174 (62.07%), Query Frame = 2
Query:  146 ECQDMIQRSL-RNPTVKFLRQHLEKAGCG-FGDKFIKAVHCNKKIAGGYVRGEG-ILVCSNHMNIQDDVNQVIIHELIHAYDECRAANLDW-SNCAHHACSEIRAGHLSGDCHYKRELLRGYMKIRGHEQDCVRRRVMKSVIANPYCSAGAAKDAMEAVCDVCYHDTQPFDRAP 655
            +CQ M++ +L  +P  K L   ++++GC  + D+      C+  ++GG+      I++C N+++ Q  +N+V+ HELIHA+D CR A++DW +N  H ACSEIRA +LSGDC    EL R    ++GH Q CVR R ++S++A    S   A+ A++ V D C++D +PF R P
Sbjct:   40 KCQLMLKIALDTSPYAKLLLDAMKQSGCTVYKDRHFSCEECDGSVSGGFDAATSEIVLCQNNIHQQSHMNRVVTHELIHAFDHCR-AHVDWFNNVRHLACSEIRAANLSGDCTLANELTRFKFGVKGHHQVCVRDRALRSILAVRNISRETAEKAVDEVFDSCFNDHEPFGRIP 212          
BLAST of FC923409 vs. ExPASy Swiss-Prot
Match: ATP23_HUMAN (Mitochondrial inner membrane protease ATP23 homolog OS=Homo sapiens GN=XRCC6BP1 PE=1 SV=3)

HSP 1 Score: 126.716 bits (317), Expect = 1.095e-28
Identity = 67/175 (38.29%), Postives = 105/175 (60.00%), Query Frame = 2
Query:  143 EECQDMIQRSLR-NPTVKFLRQHLEKAGCGFG-DKFIKAVHCNKKIAGGYVRGEG-ILVCSNHMNIQDDVNQVIIHELIHAYDECRAANLDW-SNCAHHACSEIRAGHLSGDCHYKRELLRGYMKIRGHEQDCVRRRVMKSVIANPYCSAGAAKDAMEAVCDVCYHDTQPFDRAP 655
            ++CQ  + ++L  NP VK L   ++ +GC    D+      CN  ++GG+      I++C N+++ Q  +N+V+ HELIHA+D CR A++DW +N  H ACSE+RA +LSGDC    E+ R +  ++ H Q CVR R   S++A    S   AK A++ V + C++D +PF R P
Sbjct:   50 QKCQLRLLKTLETNPYVKLLLDAMKHSGCAVNKDRHFSCEDCNGNVSGGFDASTSQIVLCQNNIHNQAHMNRVVTHELIHAFDHCR-AHVDWFTNIRHLACSEVRAANLSGDCSLVNEIFRLHFGLKQHHQTCVRDRATLSILAVRNISKEVAKKAVDEVFESCFNDHEPFGRIP 223          
BLAST of FC923409 vs. ExPASy Swiss-Prot
Match: ATP23_DANRE (Mitochondrial inner membrane protease ATP23 homolog OS=Danio rerio GN=zgc:162885 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.161e-28
Identity = 80/228 (35.09%), Postives = 120/228 (52.63%), Query Frame = 2
Query:   53 GRRVREMSEEPAPKSIPESSSSA-----------VNGGR----TIEE--------CQDMIQRSL-RNPTVKFLRQHLEKAGCG-FGDKFIKAVHCNKKIAGGYVRGEG-ILVCSNHMNIQDDVNQVIIHELIHAYDECRAANLDW-SNCAHHACSEIRAGHLSGDCHYKRELLRGYMKIRGHEQDCVRRRVMKSVIANPYCSAGAAKDAMEAVCDVCYHDTQPFDRAP 655
            G +  ++S EP  +  P  SS               G R    T+EE        CQ M+Q ++  +P  K L   ++ +GC  F D+      C+  ++GG+      I++C N+++ Q  +N+V+ HELIHA+D CR A +DW SN  H ACSEIRA +LSGDC +  E  R    +R H Q+CVR R ++S++A    S   A+  ++ V D C++D  PF R P
Sbjct:    5 GAKAADLSREPPGEQKPSPSSRQNEEDLGYNLYPERGSRLKKSTVEESLFTFKHKCQLMLQFAMDTSPYAKLLLGAMKSSGCTVFKDRHFSCEDCDGTVSGGFDAATSQIVLCQNNIHQQAHMNRVVTHELIHAFDHCR-AQVDWFSNYRHLACSEIRAANLSGDCSFINEFSRFNFGLRKHHQECVRGRALRSILAVRRVSREEAERVVDEVFDSCFNDHAPFGRIP 231          
BLAST of FC923409 vs. ExPASy Swiss-Prot
Match: ATP23_XENTR (Mitochondrial inner membrane protease ATP23 homolog OS=Xenopus tropicalis GN=TEgg079g08.1 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.211e-27
Identity = 66/174 (37.93%), Postives = 105/174 (60.34%), Query Frame = 2
Query:  146 ECQDMIQRSL-RNPTVKFLRQHLEKAGCG-FGDKFIKAVHCNKKIAGGYVRGEG-ILVCSNHMNIQDDVNQVIIHELIHAYDECRAANLDW-SNCAHHACSEIRAGHLSGDCHYKRELLRGYMKIRGHEQDCVRRRVMKSVIANPYCSAGAAKDAMEAVCDVCYHDTQPFDRAP 655
            +CQ M++ +L  +P  K L   ++  GC  + D+      C+  ++GG+      I++C N+++ Q  +N+V+ HELIHA+D CR A++DW +N  H ACSEIRA +LSGDC    EL R    ++ H + CVR R ++S++A    S   A+ A++ V D C++D +PF R P
Sbjct:   40 KCQVMLKIALDTSPYAKLLLDAMKHTGCTVYKDRHFSCEECDGSVSGGFDAATSEIVLCQNNIHQQSHMNRVVTHELIHAFDHCR-AHVDWFNNVRHLACSEIRAANLSGDCTLANELTRFKFGVKEHHKVCVRDRALRSILAVRNVSRETAEKAVDEVFDSCFNDHEPFGRIP 212          
BLAST of FC923409 vs. ExPASy Swiss-Prot
Match: ATP23_SCHPO (Mitochondrial inner membrane protease atp23 OS=Schizosaccharomyces pombe GN=atp23 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.211e-27
Identity = 63/169 (37.28%), Postives = 101/169 (59.76%), Query Frame = 2
Query:  155 DMIQRSL--RNPTVKFLRQHLEKAGCGFGDKFIKAVHCNKKIAGGYVRGEGILVCSNHMNIQDDVNQVIIHELIHAYDECRAANLDWSNCAHHACSEIRAGHLSGDCHYKRELLRGYMK-IRGHEQDCVRRRVMKSVIANPYC-SAGAAKDAMEAVCDVCYHDTQPFDR 649
            + ++R+L  ++P + FL+  L++  C    K I    C+ +  GGY+ G+GI++C N +  +      I HE+IH +D+ R   +DW+N  H ACSEIRA  +SG+C + +EL  G +K  R H Q+CV+RR   SV  NP C S   A+  +E V + C++D +PF++
Sbjct:   16 ERVKRALMSQSPVIIFLKTALDRLNCNIEAKDISCQPCDAQSTGGYIPGKGIVLCENRLYTKKMAENTIAHEMIHMFDDHR-FEVDWNNLRHQACSEIRASSMSGECRWTKELRFGNIKTFRKHHQECVKRRATISVQGNPNCKSKEQAEAIVEEVFNSCFNDFRPFEK 183          
BLAST of FC923409 vs. ExPASy Swiss-Prot
Match: ATP23_MALGO (Mitochondrial inner membrane protease ATP23 OS=Malassezia globosa (strain ATCC 96807 / CBS 7966) GN=ATP23 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.025e-26
Identity = 77/217 (35.48%), Postives = 112/217 (51.61%), Query Frame = 2
Query:   62 VREMSEEPAPKSIP-ESSSSAVNGGRTIEECQDMIQRSLRNPTVKFLRQHLEKAGC------------GFGDKFIKAVHCNKKIAGGY--------VRGEGILVCSNHMNIQDDVNQVIIHELIHAYDECRAANLDWSNCAHHACSEIRAGHLSGDCHYKRELLRGYMKIRGHEQDCVRRRVMKSVIANPYC-SAGAAKDAMEAVCDVCYHDTQPFD 646
            +R + +  +P S   E+    +  GR  +  +D+++ S   P V+F+ +HL    C            G   K + A  C   IAGG+            GIL+C+N +  +  +   I HE+IH +D CR   +DW N  HHACSEIRA  LSGDC++ RE+ R +  +    Q+CV+RR + SV  NP C S   A   +E V D C+HDT+PFD
Sbjct:   28 IRSLVDVSSPLSPDTETREDVIARGRCEQWKEDLLRTS---PMVRFMVKHLTLIQCNPLSPREDSASQGTPPKLLIA-SCPPDIAGGFSPSPPERPTAESGILLCANRIFSKAHLEDTISHEMIHWWDHCRF-KVDWGNLRHHACSEIRAASLSGDCNWTREINRRHFALSKQHQNCVKRRGILSVRGNPACKSEEMAMKVVEDVWDSCFHDTRPFD 239          
BLAST of FC923409 vs. ExPASy Swiss-Prot
Match: ATP23_COCIM (Mitochondrial inner membrane protease ATP23 OS=Coccidioides immitis GN=ATP23 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.338e-26
Identity = 66/172 (38.37%), Postives = 94/172 (54.65%), Query Frame = 2
Query:  143 EECQDMIQRSLR-NPTVKFLRQHLEKAGCGFGDKFIKAVHCNKKIAGGYVRGEGILVCSNHMNIQDDVNQVIIHELIHAYDECRAANLDW-SNCAHHACSEIRAGHLSGDCHYKRELL-RGYMKIRGHEQDCVRRRVMKSVIANPYC-SAGAAKDAMEAVCDVCYHDTQPFD 646
            + C+D     L+ +P ++FL+ ++++ G       I    C  + AGG+    GI +C+N M  Q  +   + HE+IHAYD  R   +DW  N  H AC+EIRA +LSG+C + RE   RG  K   H Q+CVRRR + SV A P C     A   +  V D C+ DT+PFD
Sbjct:   63 KRCEDQRDYLLQYSPLIRFLQDNIQQLGGNISKHNIFCRRCKNRQAGGFDPDYGIQICANEMRNQGHLEDTLAHEMIHAYDHMR-FKVDWDDNLRHAACAEIRASNLSGECRWMREFFSRGQWKFAQHHQECVRRRAILSVQARPACKDEQHATQVVNEVWDSCFRDTRPFD 233          
BLAST of FC923409 vs. ExPASy Swiss-Prot
Match: ATP23_EMENI (Mitochondrial inner membrane protease atp23 OS=Emericella nidulans GN=atp23 PE=3 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 1.748e-26
Identity = 65/178 (36.52%), Postives = 96/178 (53.93%), Query Frame = 2
Query:  125 NGGRTIEECQDMIQRSLR-NPTVKFLRQHLEKAGCGFGDKFIKAVHCNKKIAGGYVRGEGILVCSNHMNIQDDVNQVIIHELIHAYDECRAANLDW-SNCAHHACSEIRAGHLSGDCHYKRELL-RGYMKIRGHEQDCVRRRVMKSVIANPYC-SAGAAKDAMEAVCDVCYHDTQPFD 646
            N     + C+D     L+ +P ++++   + + G       I    C  + AGG+    GIL+C+N M  Q  +   + HE++HAYD  R   +DW +N  H AC+EIRA  LSG+C + RE   RG  K+    Q+CVRRR + SV+A P C   G A+  +  V D C+ DT+PFD
Sbjct:   59 NEAADCKRCEDQRDYLLQWSPIIRYMSDSIRQLGGDLSSHNIYCRRCTNRKAGGFDPEYGILICANEMKDQGHLEDTMAHEMVHAYDHLR-FKVDWTNNLRHAACTEIRASSLSGECRWAREFFRRGQWKLTQQHQECVRRRAVLSVMARPGCQDKGHAEKVVNEVWDSCFRDTRPFD 235          
The following BLAST results are available for this feature:
BLAST of FC923409 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
ATP23_CRYNE2.132e-3242.68Mitochondrial inner membrane protease ATP23 OS=Cry... [more]
ATP23_YARLI7.583e-3041.51Mitochondrial inner membrane protease ATP23 OS=Yar... [more]
ATP23_XENLA2.881e-2939.08Mitochondrial inner membrane protease ATP23 homolo... [more]
ATP23_HUMAN1.095e-2838.29Mitochondrial inner membrane protease ATP23 homolo... [more]
ATP23_DANRE4.161e-2835.09Mitochondrial inner membrane protease ATP23 homolo... [more]
ATP23_XENTR1.211e-2737.93Mitochondrial inner membrane protease ATP23 homolo... [more]
ATP23_SCHPO1.211e-2737.28Mitochondrial inner membrane protease atp23 OS=Sch... [more]
ATP23_MALGO1.025e-2635.48Mitochondrial inner membrane protease ATP23 OS=Mal... [more]
ATP23_COCIM1.338e-2638.37Mitochondrial inner membrane protease ATP23 OS=Coc... [more]
ATP23_EMENI1.748e-2636.52Mitochondrial inner membrane protease atp23 OS=Eme... [more]

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Properties
Property NameValue
Genbank descriptionC31704G02EF StrClemenN Citrus clementina cDNA clone C31704G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923409 ID=FC923409; Name=FC923409; organism=Citrus clementina; type=EST; length=676bp
GCCAGCGTTTTATAAAACCCAAACCGATTCCATTTACCCGCCTTTTCCGT
GGGGCAGGCGAGTCAGAGAAATGTCAGAGGAACCCGCCCCGAAATCCATA
CCCGAGAGCTCCTCCTCCGCCGTCAACGGCGGGAGAACCATAGAGGAGTG
CCAAGACATGATTCAAAGAAGCCTCAGAAATCCTACGGTGAAATTCTTGA
GGCAGCATTTGGAGAAAGCTGGGTGCGGATTTGGTGACAAGTTCATTAAA
GCTGTACATTGTAATAAGAAGATTGCTGGTGGCTATGTTCGCGGTGAAGG
GATTTTGGTTTGTAGTAATCACATGAACATCCAAGATGATGTCAACCAAG
TAATTATACATGAGCTAATTCACGCATATGATGAATGCCGGGCTGCAAAC
TTGGATTGGTCTAATTGCGCTCATCATGCCTGTAGTGAGATTCGTGCTGG
TCATCTAAGTGGTGATTGTCACTACAAACGGGAATTACTGCGGGGTTACA
TGAAGATAAGAGGCCATGAACAGGATTGTGTGAGAAGAAGAGTCATGAAA
TCGGTGATTGCTAACCCTTACTGCTCTGCGGGAGCAGCAAAGGATGCCAT
GGAAGCTGTCTGCGATGTCTGTTACCATGATACACAACCCTTTGATAGAG
CACCTTGAAGCATGTTTACAGCCAAT
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