FC923411

Overview
NameFC923411
Unique NameFC923411
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length527
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14459 contig Ccv1_Contig14459:1..527. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC923411 vs. ExPASy Swiss-Prot
Match: SOC1_ARATH (MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.591e-13
Identity = 37/39 (94.87%), Postives = 37/39 (94.87%), Query Frame = 1 
Query:  409 MVRGKTQMKRIENATSRQVTFSKRTXGLLKKAFELSVLC 525
            MVRGKTQMKRIENATSRQVTFSKR  GLLKKAFELSVLC
Sbjct:    1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLC 39
[Close]
BLAST of FC923411 vs. ExPASy Swiss-Prot
Match: AGL19_ARATH (Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana GN=AGL19 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.468e-12
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 1 
Query:  409 MVRGKTQMKRIENATSRQVTFSKRTXGLLKKAFELSVLC 525
            MVRGKT+MKRIENATSRQVTFSKR  GLLKKAFELSVLC
Sbjct:    1 MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLC 39
[Close]
BLAST of FC923411 vs. ExPASy Swiss-Prot
Match: AGL14_ARATH (Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana GN=AGL14 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.468e-12
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 1 
Query:  409 MVRGKTQMKRIENATSRQVTFSKRTXGLLKKAFELSVLC 525
            MVRGKT+MKRIENATSRQVTFSKR  GLLKKAFELSVLC
Sbjct:    1 MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLC 39
[Close]
BLAST of FC923411 vs. ExPASy Swiss-Prot
Match: MAD50_ORYSJ (MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica GN=MADS50 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.505e-12
Identity = 36/39 (92.31%), Postives = 36/39 (92.31%), Query Frame = 1 
Query:  409 MVRGKTQMKRIENATSRQVTFSKRTXGLLKKAFELSVLC 525
            MVRGKTQMKRIEN TSRQVTFSKR  GLLKKAFELSVLC
Sbjct:    1 MVRGKTQMKRIENPTSRQVTFSKRRNGLLKKAFELSVLC 39
[Close]
BLAST of FC923411 vs. ExPASy Swiss-Prot
Match: MAD56_ORYSJ (MADS-box transcription factor 56 OS=Oryza sativa subsp. japonica GN=MADS56 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.769e-11
Identity = 33/39 (84.62%), Postives = 36/39 (92.31%), Query Frame = 1 
Query:  409 MVRGKTQMKRIENATSRQVTFSKRTXGLLKKAFELSVLC 525
            MVRG+T++KRIEN TSRQVTFSKR  GLLKKAFELSVLC
Sbjct:    1 MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLC 39
[Close]
BLAST of FC923411 vs. ExPASy Swiss-Prot
Match: MAD56_ORYSI (MADS-box transcription factor 56 OS=Oryza sativa subsp. indica GN=MADS56 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 2.769e-11
Identity = 33/39 (84.62%), Postives = 36/39 (92.31%), Query Frame = 1 
Query:  409 MVRGKTQMKRIENATSRQVTFSKRTXGLLKKAFELSVLC 525
            MVRG+T++KRIEN TSRQVTFSKR  GLLKKAFELSVLC
Sbjct:    1 MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLC 39
The following BLAST results are available for this feature:
BLAST of FC923411 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
SOC1_ARATH6.591e-1394.87MADS-box protein SOC1 OS=Arabidopsis thaliana GN=S... [more]
AGL19_ARATH1.468e-1292.31Agamous-like MADS-box protein AGL19 OS=Arabidopsis... [more]
AGL14_ARATH1.468e-1292.31Agamous-like MADS-box protein AGL14 OS=Arabidopsis... [more]
MAD50_ORYSJ2.505e-1292.31MADS-box transcription factor 50 OS=Oryza sativa s... [more]
MAD56_ORYSJ2.769e-1184.62MADS-box transcription factor 56 OS=Oryza sativa s... [more]
MAD56_ORYSI2.769e-1184.62MADS-box transcription factor 56 OS=Oryza sativa s... [more]
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Properties
Property NameValue
Genbank descriptionC31704G04EF StrClemenN Citrus clementina cDNA clone C31704G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923411 ID=FC923411; Name=FC923411; organism=Citrus clementina; type=EST; length=527bp
GGACTGCTTCTTTCCTCAGGTTACCAAAAGAAGAAAGAGATTAGGTTCTT
CGCTCTTGACTCTCCGGTTGTTTTTCCATTATAAATATCAATATTATTCT
ATTTTAATCTATAGCTAGGGTTATTGGCTGGAGAAGCTAGAAAGCAAAGA
AAGGAGTATGGTATCATGATATGATGATAAATAAAAATATATTTTATTTT
TTAAATGTATTTTCAGTGAAAAAATCTAGGGCTTCTCAAGATTTTATTGC
AAGAGAAATTTCTATAATTATCATTGTCTCTCTTGTTCATCCACTGGAGC
TTTCACAGACCCATCGAATCTCTTTTTCAGCACTTTCCTAATTTGTTTTT
TATTTCAGTTTATTCTCTCATTCTATCTTTGGAAACTTTTAGGAGTAGGA
GAGTGAAAATGGTGAGGGGCAAAACCCAGATGAAGAGAATAGAAAATGCA
ACAAGCAGGCAAGTTACTTTCTCAAAGCGAACAANTGGGCTGCTCAAAAA
GGCCTTTGAGTTATCGGTTCTTTGTGA
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