FC923413

Overview
NameFC923413
Unique NameFC923413
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length658
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14461 contig Ccv1_Contig14461:1..658. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923413 vs. ExPASy Swiss-Prot
Match: VAR3_ARATH (Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana GN=VAR3 PE=1 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 4.970e-31
Identity = 67/74 (90.54%), Postives = 71/74 (95.95%), Query Frame = 2
Query:  437 GKSLEGSAVKELDPLDMSEEAKAERWFRRVAQIKDISELSQIPDEDFPSIMPMRKGVNRFVVSKRKTPLERRLT 658
            GKSLEGS VKE D LDMSEEAKAERWF+RVA+IK+ISELS+IPDEDFPSIMPMRKGVNRFVVSKRKTPLERRLT
Sbjct:  664 GKSLEGSLVKESDLLDMSEEAKAERWFKRVAEIKNISELSEIPDEDFPSIMPMRKGVNRFVVSKRKTPLERRLT 737          

HSP 2 Score: 71.633 bits (174), Expect = 3.956e-12
Identity = 71/230 (30.87%), Postives = 106/230 (46.09%), Query Frame = 2
Query:   11 GADSTAKASGESSNSLMPEKLNDARPVV-----PDMNGVQQMENQQLGSGRWNSKSSGENVEGMKTGSSAHETCINANSTGKNFNSLPTNNKNWSSG-YSGKEMTNSAWNSNQPAENQSSGYSTKENTNFATSPSQPAE-----NQNVRSSWTGKSLEGSAVKELDPLDMSEEAKAE--RWFRRVAQIKDISEL-SQIPDEDFPSIMPMRKGVNRFVVSKRKTPLERRLT 658
            G+D+ +  + E    +MP +    R VV     P    +   EN+    G  NSK S +N  G KT  S +E   +++S         +++KN SS  +   +  N+ +    P  +       KE T      +   +     NQNV      KS    + KE D L+  +    E  RWF+RV ++ ++S+L S IP E  P  MPMRKG NRFVVS++K   +R LT
Sbjct:  377 GSDANSVDTDEDFPEIMPLRKGVNRYVVSTRKPPLERRLANTENRVATDG--NSKRSDDNALGSKTTRSLNEILGSSSSLTSR-----SDDKNVSSRRFESSQGINTDFVPFVPLPSDMFAKKPKEETQIGLIDNIQVDGFSGGNQNVYQE--DKSDANHSGKETDRLEKEDHKSEEPARWFKRVTELHNVSDLESAIPQEISPEKMPMRKGENRFVVSRKK---DRSLT 594          

HSP 3 Score: 68.1662 bits (165), Expect = 4.374e-11
Identity = 59/187 (31.55%), Postives = 83/187 (44.39%), Query Frame = 2
Query:   95 PDMNGVQQMENQQLGSGRWNSKSSGENVEGMKTGSSAHETCINANSTGKNFNSLPTNNKNWSSGYSGKEMTNSAWNSNQPAENQSSGYSTKENTNFATSPSQPAENQNVRSSWTGKSLEGSAVKELDPLDMSEEAKAERWFRRVAQIKDISELSQIPDEDFPSIMPMRKGVNRFVVSKRKTPLERRL 655
            P+ N    M+NQ         +S   NVE MK G      C   N   +N      +          +++T S W   Q        Y+   N        +   + ++ S+    + + S+  EL+   +  E KA+RW  +VAQ    +  S   DEDFP IMP+RKGVNR+VVS RK PLERRL
Sbjct:  246 PESNVHDTMQNQYSDRDGQGVRSFQNNVE-MKRGDWICSRCSGMNFA-RNVKCFQCDEAR-----PKRQLTGSEWECPQ-----CDFYNYGRNVACLRCDCKRPRDSSLNSA----NSDYSSDPELERRLVENEKKAQRWLSKVAQGGSDAN-SVDTDEDFPEIMPLRKGVNRYVVSTRKPPLERRL 415          
The following BLAST results are available for this feature:
BLAST of FC923413 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
VAR3_ARATH4.970e-3190.54Zinc finger protein VAR3, chloroplastic OS=Arabido... [more]
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Properties
Property NameValue
Genbank descriptionC31704G06EF StrClemenN Citrus clementina cDNA clone C31704G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923413 ID=FC923413; Name=FC923413; organism=Citrus clementina; type=EST; length=658bp
GGAGCCAGTGGGAGCAGATTCAACTGCTAAAGCTTCTGGAGAATCATCAA
ATTCTTTGATGCCTGAGAAGTTGAATGATGCAAGACCGGTTGTGCCTGAT
ATGAATGGTGTGCAACAGATGGAAAACCAGCAGCTAGGTTCTGGAAGATG
GAACTCAAAATCTTCTGGAGAGAATGTAGAAGGAATGAAGACGGGTAGTT
CAGCTCATGAGACTTGTATCAATGCAAATTCAACCGGGAAGAATTTTAAT
AGTCTGCCTACCAACAACAAGAACTGGAGTAGTGGATATTCTGGGAAGGA
GATGACAAATTCAGCTTGGAATTCAAATCAGCCGGCCGAAAACCAGAGTA
GCGGATATTCTACAAAGGAGAATACGAATTTTGCCACGAGTCCATCTCAG
CCAGCTGAAAATCAAAATGTTAGAAGTAGCTGGACTGGAAAGAGCCTGGA
GGGGTCAGCAGTGAAGGAACTGGATCCATTAGATATGTCTGAGGAGGCCA
AGGCAGAGAGATGGTTTCGACGTGTCGCCCAGATCAAGGACATATCAGAG
TTGAGTCAGATCCCAGATGAGGATTTCCCATCAATAATGCCAATGCGGAA
AGGAGTGAACAGGTTTGTTGTAAGCAAGAGGAAAACACCATTAGAAAGGA
GGTTGACA
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