FC923413
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC923413 vs. ExPASy Swiss-Prot
Match: VAR3_ARATH (Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana GN=VAR3 PE=1 SV=2) HSP 1 Score: 134.42 bits (337), Expect = 4.970e-31 Identity = 67/74 (90.54%), Postives = 71/74 (95.95%), Query Frame = 2 Query: 437 GKSLEGSAVKELDPLDMSEEAKAERWFRRVAQIKDISELSQIPDEDFPSIMPMRKGVNRFVVSKRKTPLERRLT 658 GKSLEGS VKE D LDMSEEAKAERWF+RVA+IK+ISELS+IPDEDFPSIMPMRKGVNRFVVSKRKTPLERRLT Sbjct: 664 GKSLEGSLVKESDLLDMSEEAKAERWFKRVAEIKNISELSEIPDEDFPSIMPMRKGVNRFVVSKRKTPLERRLT 737 HSP 2 Score: 71.633 bits (174), Expect = 3.956e-12 Identity = 71/230 (30.87%), Postives = 106/230 (46.09%), Query Frame = 2 Query: 11 GADSTAKASGESSNSLMPEKLNDARPVV-----PDMNGVQQMENQQLGSGRWNSKSSGENVEGMKTGSSAHETCINANSTGKNFNSLPTNNKNWSSG-YSGKEMTNSAWNSNQPAENQSSGYSTKENTNFATSPSQPAE-----NQNVRSSWTGKSLEGSAVKELDPLDMSEEAKAE--RWFRRVAQIKDISEL-SQIPDEDFPSIMPMRKGVNRFVVSKRKTPLERRLT 658 G+D+ + + E +MP + R VV P + EN+ G NSK S +N G KT S +E +++S +++KN SS + + N+ + P + KE T + + NQNV KS + KE D L+ + E RWF+RV ++ ++S+L S IP E P MPMRKG NRFVVS++K +R LT Sbjct: 377 GSDANSVDTDEDFPEIMPLRKGVNRYVVSTRKPPLERRLANTENRVATDG--NSKRSDDNALGSKTTRSLNEILGSSSSLTSR-----SDDKNVSSRRFESSQGINTDFVPFVPLPSDMFAKKPKEETQIGLIDNIQVDGFSGGNQNVYQE--DKSDANHSGKETDRLEKEDHKSEEPARWFKRVTELHNVSDLESAIPQEISPEKMPMRKGENRFVVSRKK---DRSLT 594 HSP 3 Score: 68.1662 bits (165), Expect = 4.374e-11 Identity = 59/187 (31.55%), Postives = 83/187 (44.39%), Query Frame = 2 Query: 95 PDMNGVQQMENQQLGSGRWNSKSSGENVEGMKTGSSAHETCINANSTGKNFNSLPTNNKNWSSGYSGKEMTNSAWNSNQPAENQSSGYSTKENTNFATSPSQPAENQNVRSSWTGKSLEGSAVKELDPLDMSEEAKAERWFRRVAQIKDISELSQIPDEDFPSIMPMRKGVNRFVVSKRKTPLERRL 655 P+ N M+NQ +S NVE MK G C N +N + +++T S W Q Y+ N + + ++ S+ + + S+ EL+ + E KA+RW +VAQ + S DEDFP IMP+RKGVNR+VVS RK PLERRL Sbjct: 246 PESNVHDTMQNQYSDRDGQGVRSFQNNVE-MKRGDWICSRCSGMNFA-RNVKCFQCDEAR-----PKRQLTGSEWECPQ-----CDFYNYGRNVACLRCDCKRPRDSSLNSA----NSDYSSDPELERRLVENEKKAQRWLSKVAQGGSDAN-SVDTDEDFPEIMPLRKGVNRYVVSTRKPPLERRL 415 The following BLAST results are available for this feature:
BLAST of FC923413 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 1
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC923413 ID=FC923413; Name=FC923413; organism=Citrus clementina; type=EST; length=658bpback to top |