FC923416

Overview
NameFC923416
Unique NameFC923416
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length396
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9795 contig Ccv1_Contig9795:46..444. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC923416 vs. ExPASy Swiss-Prot
Match: DUS12_HUMAN (Dual specificity protein phosphatase 12 OS=Homo sapiens GN=DUSP12 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.728e-13
Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 2 
Query:   11 GALEGKLSCAHCEARLGYFNWSGIQCSCGSWITPAFQLHKSRVDKSTV 154
            G ++G+L C  C A+LG FNW G QCSCG WITPAFQ+HK+RVD+  +
Sbjct:  282 GVMDGQLLCPKCSAKLGSFNWYGEQCSCGRWITPAFQIHKNRVDEMKI 329
[Close]
BLAST of FC923416 vs. ExPASy Swiss-Prot
Match: DUS12_RAT (Dual specificity protein phosphatase 12 OS=Rattus norvegicus GN=Dusp12 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.563e-13
Identity = 29/45 (64.44%), Postives = 36/45 (80.00%), Query Frame = 2 
Query:   11 GALEGKLSCAHCEARLGYFNWSGIQCSCGSWITPAFQLHKSRVDK 145
            G ++G+L C  C A+LG FNW G QCSCG WITPAFQ+HK+RVD+
Sbjct:  281 GVMDGQLLCPKCSAKLGSFNWYGEQCSCGRWITPAFQIHKNRVDE 325
[Close]
BLAST of FC923416 vs. ExPASy Swiss-Prot
Match: DUS12_MOUSE (Dual specificity protein phosphatase 12 OS=Mus musculus GN=Dusp12 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.563e-13
Identity = 29/45 (64.44%), Postives = 36/45 (80.00%), Query Frame = 2 
Query:   11 GALEGKLSCAHCEARLGYFNWSGIQCSCGSWITPAFQLHKSRVDK 145
            G ++G+L C  C A+LG FNW G QCSCG WITPAFQ+HK+RVD+
Sbjct:  281 GVMDGQLLCPKCSAKLGSFNWYGEQCSCGRWITPAFQIHKNRVDE 325
[Close]
BLAST of FC923416 vs. ExPASy Swiss-Prot
Match: DUSP4_DICDI (Probable dual specificity protein phosphatase DDB_G0281963 OS=Dictyostelium discoideum GN=DDB_G0281963 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.703e-11
Identity = 26/46 (56.52%), Postives = 35/46 (76.09%), Query Frame = 2 
Query:   17 LEGKLSCAHCEARLGYFNWSGIQCSCGSWITPAFQLHKSRVDKSTV 154
            +EGKL C  C  +LG ++WSG QCSCG+WI P+FQ+ K+RVD+  V
Sbjct:  347 MEGKLFCPSCNEKLGSWSWSGEQCSCGAWIAPSFQIPKTRVDEKKV 392
The following BLAST results are available for this feature:
BLAST of FC923416 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
DUS12_HUMAN2.728e-1360.42Dual specificity protein phosphatase 12 OS=Homo sa... [more]
DUS12_RAT3.563e-1364.44Dual specificity protein phosphatase 12 OS=Rattus ... [more]
DUS12_MOUSE3.563e-1364.44Dual specificity protein phosphatase 12 OS=Mus mus... [more]
DUSP4_DICDI9.703e-1156.52Probable dual specificity protein phosphatase DDB_... [more]
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Properties
Property NameValue
Genbank descriptionC31704G09EF StrClemenN Citrus clementina cDNA clone C31704G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923416 ID=FC923416; Name=FC923416; organism=Citrus clementina; type=EST; length=396bp
AGTTGAAGAGGGCGCATTGGAGGGAAAGTTATCCTGTGCCCATTGTGAAG
CACGCTTGGGTTACTTCAATTGGTCGGGTATACAATGCAGCTGTGGAAGC
TGGATCACCCCAGCTTTCCAGCTCCATAAAAGTCGTGTGGACAAGAGCAC
CGTCTAATATTTGAAGTAAAATCAAAAGGGAGCCCATCAGCTCGCCCTAG
AAGATCAACAGCCAATGTTTTGTGGCGTTTACATATACCAATTATACAGT
CATATAACATCCAGGAAGAAAGTACCCCTTGTAGGAGTTCAACATTTGCT
TGCTTATGACGTAATTTGCTGGGGGGTTGCACTTTGAATTGTGGGGCTTT
CATAGTATAATGTTAAAAAACTGTCGTTTTGAGGGATTTCAAGGCT
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