FC923423

Overview
NameFC923423
Unique NameFC923423
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length488
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9476 contig Ccv1_Contig9476:12..499. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC923423 vs. ExPASy Swiss-Prot
Match: NCB5R_ARATH (NADH-cytochrome b5 reductase-like protein OS=Arabidopsis thaliana GN=At5g20080 PE=1 SV=2)

HSP 1 Score: 221.476 bits (563), Expect = 1.608e-57
Identity = 109/149 (73.15%), Postives = 122/149 (81.88%), Query Frame = 2 
Query:   41 MATTFFRRLAKATPIAFNEAFGGQPKSDFNKFRFPFGAIAAVAGGVSYYCYFSSPNLVHLDQINEETGPKIALNPDKWIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDL 487
            MAT+FFRRLA++ PI F  AFG Q KS    FRF  GAIAA++GG SYY   S  NLV+LDQ  EETGPK ALNPDKW+ FKLQDTARVSHN+ LFRFSFDPSA+LGL VASC+LTRAPLG +AEG TKYV+RPYTPISD EAKG+FDL
Sbjct:    1 MATSFFRRLARSAPITFPVAFGSQSKSGSGAFRFSTGAIAALSGGFSYYYLTSGNNLVYLDQAKEETGPKTALNPDKWLEFKLQDTARVSHNTQLFRFSFDPSAELGLHVASCLLTRAPLGYNAEGKTKYVIRPYTPISDPEAKGYFDL 149
The following BLAST results are available for this feature:
BLAST of FC923423 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
NCB5R_ARATH1.608e-5773.15NADH-cytochrome b5 reductase-like protein OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionC31704H04EF StrClemenN Citrus clementina cDNA clone C31704H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923423 ID=FC923423; Name=FC923423; organism=Citrus clementina; type=EST; length=488bp
GATACTTTTCTTTGCTTTGCTTCTTCTCCAACATTAGAAAATGGCTACGA
CCTTCTTCAGAAGACTGGCTAAAGCTACTCCAATTGCATTCAACGAGGCA
TTTGGAGGGCAACCCAAGTCCGATTTCAACAAATTTCGATTTCCCTTTGG
AGCAATCGCTGCTGTTGCTGGTGGAGTCTCCTATTACTGTTACTTTTCAT
CCCCAAATTTGGTTCATCTAGATCAAATCAATGAAGAGACGGGTCCAAAA
ATTGCTCTCAATCCGGACAAGTGGATTGGATTTAAGTTGCAAGACACTGC
AAGGGTAAGCCACAATAGTCATTTGTTCAGGTTTTCATTTGATCCATCTG
CCAAGTTGGGTTTGGATGTTGCTTCATGCATCCTTACAAGGGCTCCATTA
GGACAAGATGCTGAAGGAAATACAAAATATGTTGTACGGCCGTATACTCC
TATATCAGATACAGAAGCTAAGGGACACTTTGACTTGT
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