FC923424

Overview
NameFC923424
Unique NameFC923424
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length366
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14464 contig Ccv1_Contig14464:1..366. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923424 vs. ExPASy Swiss-Prot
Match: GRP8_ARATH (Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=GRP8 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.727e-19
Identity = 42/84 (50.00%), Postives = 59/84 (70.24%), Query Frame = 3
Query:  108 ENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGG 359
            E R FVGGL+W   +  L+  F +FG +I+ +I+ +R SGR RGFGF+T+ D +AM DAI EM+G+E   RVI+VN+AQ +  G
Sbjct:    5 EYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQSRGSG 88          
BLAST of FC923424 vs. ExPASy Swiss-Prot
Match: GRP10_BRANA (Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.270e-18
Identity = 41/84 (48.81%), Postives = 61/84 (72.62%), Query Frame = 3
Query:  108 ENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGG 359
            E R FVGGL+W   + +LE  F +FG++I+ +I+ +R +GR RGFGF+T+ D ++M DAI EM+G+E   R I+VN+AQ + GG
Sbjct:    5 EYRCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTITVNEAQSRGGG 88          
BLAST of FC923424 vs. ExPASy Swiss-Prot
Match: GRP2_SINAL (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.828e-18
Identity = 43/90 (47.78%), Postives = 63/90 (70.00%), Query Frame = 3
Query:   93 MAGKD-ENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGG 359
            MA  D E R FVGGL+W   ER LE AF +FG++++ +I+ +R +GR RGFGF+T+ D ++M DAI  M+G++   R I+VN+AQ +  G
Sbjct:    1 MASPDVEYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQSRGSG 90          
BLAST of FC923424 vs. ExPASy Swiss-Prot
Match: GRPA_MAIZE (Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays GN=RAB15 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.835e-17
Identity = 42/90 (46.67%), Postives = 62/90 (68.89%), Query Frame = 3
Query:   93 MAGKD-ENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGG 359
            MA  D E R FVGGL+W  +   LENAF  +G+I++ +++ +R +GR RGFGF+T++   +M DAI  M+G+E   R I+VN+AQ + GG
Sbjct:    1 MAAADVEYRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVNQAQSRGGG 90          
BLAST of FC923424 vs. ExPASy Swiss-Prot
Match: GRP7_ARATH (Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=GRP7 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.835e-17
Identity = 41/88 (46.59%), Postives = 61/88 (69.32%), Query Frame = 3
Query:   96 AGKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGG 359
            +G  E R FVGGL+W   +R LE AF ++G +I+ +I+ +R +GR RGFGF+T+ D +AM DAI  M+G++   R I+VN+AQ +  G
Sbjct:    3 SGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSRGSG 90          
BLAST of FC923424 vs. ExPASy Swiss-Prot
Match: GRP2_SORBI (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.129e-17
Identity = 42/90 (46.67%), Postives = 61/90 (67.78%), Query Frame = 3
Query:   93 MAGKD-ENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGG 359
            MA  D E R FVGGL+W      LE AF  FG++I+ +++ +R +GR RGFGF+T++  ++M DAI  M+G+E   R I+VN+AQ + GG
Sbjct:    1 MAAADVEYRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNITVNQAQSRGGG 90          
BLAST of FC923424 vs. ExPASy Swiss-Prot
Match: GRP1_SINAL (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.129e-17
Identity = 41/90 (45.56%), Postives = 63/90 (70.00%), Query Frame = 3
Query:   93 MAGKD-ENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGG 359
            MA  D E R FVGGL+W   +R LE AF ++G++++ +I+ +R +GR RGFGF+T+ D ++M DAI  M+G++   R I+VN+AQ +  G
Sbjct:    1 MASPDVEYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQSRGSG 90          
BLAST of FC923424 vs. ExPASy Swiss-Prot
Match: GRP1_DAUCA (Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.189e-16
Identity = 40/84 (47.62%), Postives = 57/84 (67.86%), Query Frame = 3
Query:  108 ENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGG 359
            E R FVGGL+W   +  LE AF +FG I + +I+ +R +GR RGFGF+T+ D ++M DAI  M+G+E   R I+VN+AQ +  G
Sbjct:    5 EYRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNITVNEAQSRGSG 88          
BLAST of FC923424 vs. ExPASy Swiss-Prot
Match: GRP_HORVU (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare GN=blt801 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.007e-15
Identity = 37/81 (45.68%), Postives = 56/81 (69.14%), Query Frame = 3
Query:  108 ENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPK 350
            E R FVGGL W   ++ L+NAF ++G +I+ +I+ +R +GR RGFGF+T+A   AM  AI  M+G++   R I+VN+AQ +
Sbjct:    5 EYRCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVNEAQSR 85          
BLAST of FC923424 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.607e-13
Identity = 31/80 (38.75%), Postives = 53/80 (66.25%), Query Frame = 3
Query:  111 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPK 350
            NR++VG LSW V +  LE+ F   GK++E +++ +R SGR +GFGF+TY   + + +AI+ + G +   R I V++A+ +
Sbjct:  204 NRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEAR 283          
The following BLAST results are available for this feature:
BLAST of FC923424 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
GRP8_ARATH9.727e-1950.00Glycine-rich RNA-binding protein 8 OS=Arabidopsis ... [more]
GRP10_BRANA1.270e-1848.81Glycine-rich RNA-binding protein 10 OS=Brassica na... [more]
GRP2_SINAL4.828e-1847.78Glycine-rich RNA-binding protein GRP2A OS=Sinapis ... [more]
GRPA_MAIZE1.835e-1746.67Glycine-rich RNA-binding, abscisic acid-inducible ... [more]
GRP7_ARATH1.835e-1746.59Glycine-rich RNA-binding protein 7 OS=Arabidopsis ... [more]
GRP2_SORBI3.129e-1746.67Glycine-rich RNA-binding protein 2 OS=Sorghum bico... [more]
GRP1_SINAL3.129e-1745.56Glycine-rich RNA-binding protein GRP1A OS=Sinapis ... [more]
GRP1_DAUCA1.189e-1647.62Glycine-rich RNA-binding protein OS=Daucus carota ... [more]
GRP_HORVU1.007e-1545.68Glycine-rich RNA-binding protein blt801 OS=Hordeum... [more]
ROC1_ARATH1.607e-1338.75Ribonucleoprotein At2g37220, chloroplastic OS=Arab... [more]

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Properties
Property NameValue
Genbank descriptionC31704H05EF StrClemenN Citrus clementina cDNA clone C31704H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923424 ID=FC923424; Name=FC923424; organism=Citrus clementina; type=EST; length=366bp
GTCCCGAACACGTCTAATTAAACAGCTCTAGAGTTTCGCAAAGTGAATAC
ACGACAGAAAATATCAACAGCGAATAATAGTGATTGTTTGCAATGGCTGG
AAAAGACGAGAACAGGATATTTGTCGGAGGGCTGTCCTGGAACGTCACTG
AGCGACAGCTCGAAAACGCGTTTGATCGTTTTGGAAAAATAATCGAGTGC
CAGATCATGTTGGAAAGAGGTTCAGGCCGTCCACGTGGGTTCGGATTTAT
TACATATGCAGACCGTCGGGCGATGGATGATGCTATCAGAGAAATGCATG
GGCGCGAGTTTGGTGATAGGGTCATCTCTGTGAATAAGGCCCAGCCAAAA
ATGGGAGGTGAGGTTT
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