FC923429

Overview
NameFC923429
Unique NameFC923429
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length601
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC923429_ssr387 microsatellite FC923429_ssr387:387..396. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig30 contig Ccv1_Contig30:369..970. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923429 vs. ExPASy Swiss-Prot
Match: PSBP_CUCSA (Oxygen-evolving enhancer protein 2, chloroplastic OS=Cucumis sativus GN=PSBP PE=2 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 3.302e-77
Identity = 136/169 (80.47%), Postives = 149/169 (88.17%), Query Frame = 1
Query:   46 MASTQCFLHHHALSTTPARTSSSQRHVSNIK-PTQIVCRAQKQA-VQEDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDPNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKK 546
            MAST CFLHHHAL T  AR+SSS R  +  K P  +VCRAQKQ   QE++G  VSRRLALTVLIGAAA+GSKVSPADAAYGE+ANVFGKPK+NTD+LPY+GDGFKLSIPSKWNPSKEREFPGQVLRYEDNFD NSN+SVII PTDKKSI D+GSPEEFLSKVDYLLGK+
Sbjct:    1 MASTSCFLHHHAL-TAAARSSSSPRQAALPKSPQLLVCRAQKQQPAQEEEGGVVSRRLALTVLIGAAALGSKVSPADAAYGEAANVFGKPKSNTDYLPYSGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNLSVIINPTDKKSIKDFGSPEEFLSKVDYLLGKQ 168          

HSP 2 Score: 42.743 bits (99), Expect = 3.302e-77
Identity = 19/23 (82.61%), Postives = 21/23 (91.30%), Query Frame = 3
Query:  531 LAGKKAYSGKTSSEGGFDPDAVA 599
            L GK+AY GKT+SEGGFDPDAVA
Sbjct:  164 LLGKQAYFGKTASEGGFDPDAVA 186          
BLAST of FC923429 vs. ExPASy Swiss-Prot
Match: PSBP1_TOBAC (Oxygen-evolving enhancer protein 2-1, chloroplastic OS=Nicotiana tabacum GN=PSBP1 PE=3 SV=2)

HSP 1 Score: 268.855 bits (686), Expect = 7.999e-76
Identity = 135/173 (78.03%), Postives = 155/173 (89.60%), Query Frame = 1
Query:   46 MASTQCFLHHHALSTTPARTSSS---QRHVSNIKPTQIVCRAQKQAV-QEDDGSAV--SRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDPNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKK 546
            MASTQCFLH HALS++ ART+SS   QR+VS++KP Q+VCRAQKQ+  QEDDG++V  SRRLALTVLIGAAA+GSKVSPADAAYGE+ANVFGKPK NTDFL YNGDGFKL +P+KWNPSKE EFPGQVLRYEDNFD  SN+ V +TPTDKKSITDYGSPEEFL++VD+LLGK+
Sbjct:    1 MASTQCFLHQHALSSSAARTTSSVSSQRYVSSLKPNQLVCRAQKQSSPQEDDGNSVVVSRRLALTVLIGAAAIGSKVSPADAAYGEAANVFGKPKENTDFLAYNGDGFKLQVPAKWNPSKEVEFPGQVLRYEDNFDSTSNLIVTVTPTDKKSITDYGSPEEFLTQVDFLLGKQ 173          

HSP 2 Score: 35.039 bits (79), Expect = 7.999e-76
Identity = 16/23 (69.57%), Postives = 18/23 (78.26%), Query Frame = 3
Query:  531 LAGKKAYSGKTSSEGGFDPDAVA 599
            L GK+AY GKT SEGGF+  AVA
Sbjct:  169 LLGKQAYFGKTDSEGGFESGAVA 191          
BLAST of FC923429 vs. ExPASy Swiss-Prot
Match: PSBP1_ARATH (Oxygen-evolving enhancer protein 2-1, chloroplastic OS=Arabidopsis thaliana GN=PSBP1 PE=1 SV=2)

HSP 1 Score: 258.84 bits (660), Expect = 4.694e-73
Identity = 127/170 (74.71%), Postives = 150/170 (88.24%), Query Frame = 1
Query:   46 MASTQCFLHHHALSTTPARTSSS---QRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDPNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKK 546
            MA + CFLH  AL+++ AR+SSS   QRHVS  KP QI+C+AQ+    EDD SAVSRRLALT+L+GAAAVGSKVSPADAAYGE+ANVFGKPKTNTDFLPYNGDGFK+ +P+KWNPSKE E+PGQVLR+EDNFD  SN++V++TPTDKKSITDYGSPEEFLS+V+YLLGK+
Sbjct:    1 MAYSACFLHQSALASSAARSSSSSSSQRHVSLSKPVQIICKAQQS--HEDDNSAVSRRLALTLLVGAAAVGSKVSPADAAYGEAANVFGKPKTNTDFLPYNGDGFKVQVPAKWNPSKEIEYPGQVLRFEDNFDATSNLNVMVTPTDKKSITDYGSPEEFLSQVNYLLGKQ 168          

HSP 2 Score: 35.8094 bits (81), Expect = 4.694e-73
Identity = 16/23 (69.57%), Postives = 20/23 (86.96%), Query Frame = 3
Query:  531 LAGKKAYSGKTSSEGGFDPDAVA 599
            L GK+AY G+T+SEGGFD +AVA
Sbjct:  164 LLGKQAYFGETASEGGFDNNAVA 186          
BLAST of FC923429 vs. ExPASy Swiss-Prot
Match: PSBP_SOLTU (Oxygen-evolving enhancer protein 2, chloroplastic OS=Solanum tuberosum GN=PSBP PE=2 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 1.358e-72
Identity = 129/167 (77.25%), Postives = 144/167 (86.23%), Query Frame = 1
Query:   49 ASTQCFLH-HHALSTTPARTSSSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDPNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKK 546
            ASTQCFLH +HAL ++PARTSS    V + KP Q++CRAQKQ    +  +AVSRRLALT+LIG AA+GSKVSPADAAYGE+ANVFGKPK NTDFLPYNGDGFKL IP+KWNPSKE EFPGQVLRYEDNFD  SN+ V +TPTDKKSITDYGSPEEFLSKVDYLLGK+
Sbjct:    3 ASTQCFLHQYHALRSSPARTSS----VPSPKPNQLICRAQKQDDANNTSNAVSRRLALTLLIGTAAIGSKVSPADAAYGEAANVFGKPKENTDFLPYNGDGFKLQIPAKWNPSKEIEFPGQVLRYEDNFDSTSNLMVAVTPTDKKSITDYGSPEEFLSKVDYLLGKQ 165          

HSP 2 Score: 35.039 bits (79), Expect = 1.358e-72
Identity = 16/23 (69.57%), Postives = 18/23 (78.26%), Query Frame = 3
Query:  531 LAGKKAYSGKTSSEGGFDPDAVA 599
            L GK+AY GKT SEGGF+  AVA
Sbjct:  161 LLGKQAYFGKTDSEGGFESGAVA 183          
BLAST of FC923429 vs. ExPASy Swiss-Prot
Match: PSBP_SPIOL (Oxygen-evolving enhancer protein 2, chloroplastic OS=Spinacia oleracea GN=PSBP PE=1 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 3.928e-72
Identity = 129/172 (75.00%), Postives = 150/172 (87.21%), Query Frame = 1
Query:   46 MASTQCFLHHHALSTTPA--RTSSSQRHVS-NIKPTQIVCRAQKQAVQEDD--GSAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDPNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKK 546
            MAST CFLHHHA  ++PA  R S++QR+ + +IKP QIVC+AQKQ   E +   S VSRRLALTVLIGAAAVGSKVSPADAAYGE+ANVFGKPK NT+F+PYNGDGFKL +PSKWNPSKE+EFPGQVLRYEDNFD  SN+SV++ PTDKKSITD+GSPE+FLS+VDYLLGK+
Sbjct:    1 MASTACFLHHHAAISSPAAGRGSAAQRYQAVSIKPNQIVCKAQKQDDNEANVLNSGVSRRLALTVLIGAAAVGSKVSPADAAYGEAANVFGKPKKNTEFMPYNGDGFKLLVPSKWNPSKEKEFPGQVLRYEDNFDATSNLSVLVQPTDKKSITDFGSPEDFLSQVDYLLGKQ 172          

HSP 2 Score: 35.039 bits (79), Expect = 3.928e-72
Identity = 16/23 (69.57%), Postives = 17/23 (73.91%), Query Frame = 3
Query:  531 LAGKKAYSGKTSSEGGFDPDAVA 599
            L GK+AY GKT SEGGFD   VA
Sbjct:  168 LLGKQAYFGKTDSEGGFDSGVVA 190          
BLAST of FC923429 vs. ExPASy Swiss-Prot
Match: PSBP_PEA (Oxygen-evolving enhancer protein 2, chloroplastic OS=Pisum sativum GN=PSBP PE=1 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 6.683e-72
Identity = 131/167 (78.44%), Postives = 141/167 (84.43%), Query Frame = 1
Query:   46 MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDPNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKK 546
            MASTQCFLHH    TTP RT S QR V   KP  IVC+AQKQ    D  + VSRRLAL+VLIGAAAVGSKVSPADAAYGE+ANVFGK KTNTD+LPYNGDGFKL +P+KWNPSKEREFPGQVLRYEDNFD  SNVSV++  TDKKSITDYGSPEEFLSKVDYLLGK+
Sbjct:    1 MASTQCFLHHQYAITTPTRTLS-QRQVVTTKPNHIVCKAQKQDDVVD--AVVSRRLALSVLIGAAAVGSKVSPADAAYGEAANVFGKAKTNTDYLPYNGDGFKLLVPAKWNPSKEREFPGQVLRYEDNFDATSNVSVLVQTTDKKSITDYGSPEEFLSKVDYLLGKQ 164          

HSP 2 Score: 34.2686 bits (77), Expect = 6.683e-72
Identity = 15/23 (65.22%), Postives = 19/23 (82.61%), Query Frame = 3
Query:  531 LAGKKAYSGKTSSEGGFDPDAVA 599
            L GK+A+ G+T SEGGFD +AVA
Sbjct:  160 LLGKQAFFGQTDSEGGFDTNAVA 182          
BLAST of FC923429 vs. ExPASy Swiss-Prot
Match: PSBP_SOLLC (Oxygen-evolving enhancer protein 2, chloroplastic OS=Solanum lycopersicum GN=PSBP PE=2 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 8.716e-72
Identity = 131/169 (77.51%), Postives = 146/169 (86.39%), Query Frame = 1
Query:   49 ASTQCFLH-HHALSTTPARTSSSQRHVSNIKPTQIVCRAQKQAVQEDDGS--AVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDPNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKK 546
            ASTQCFLH +HAL ++PARTSS    VS+ KP Q++CRAQKQ    DD S  AVSRRLALT+LIG AA+GSKVSPADAAYGE+ANVFGKPK NTDFLPYNGDGFKL +P+KWNPSKE E+PGQVLRYEDNFD  SN+ V +TPTDKKSITDYGSPEEFLSKVDYLLGK+
Sbjct:    3 ASTQCFLHQYHALRSSPARTSS----VSSPKPNQLICRAQKQ----DDASNAAVSRRLALTLLIGTAAIGSKVSPADAAYGEAANVFGKPKENTDFLPYNGDGFKLQVPAKWNPSKEVEYPGQVLRYEDNFDSTSNLIVAVTPTDKKSITDYGSPEEFLSKVDYLLGKQ 163          

HSP 2 Score: 35.039 bits (79), Expect = 8.716e-72
Identity = 16/23 (69.57%), Postives = 18/23 (78.26%), Query Frame = 3
Query:  531 LAGKKAYSGKTSSEGGFDPDAVA 599
            L GK+AY GKT SEGGF+  AVA
Sbjct:  159 LLGKQAYFGKTDSEGGFESGAVA 181          
BLAST of FC923429 vs. ExPASy Swiss-Prot
Match: PSBP2_TOBAC (Oxygen-evolving enhancer protein 2-2, chloroplastic OS=Nicotiana tabacum GN=PSBP2 PE=1 SV=2)

HSP 1 Score: 253.062 bits (645), Expect = 8.117e-67
Identity = 130/176 (73.86%), Postives = 148/176 (84.09%), Query Frame = 1
Query:   46 MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQI-VCRAQKQAVQEDDGS---AVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDPNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKKPIPAK 561
            MASTQCFLHHHALST PART   +  V ++KP Q+ VCRAQKQ+  ++D     +VSRRLALTVLIGAAAVGSKVSPADAAYGE+ANVFGKPKT+TDF  YNGDGFKL IPSKWNP+KE E+PGQVLR+EDNFD  SNV V ITPTDKKSITD+GSPE+FLS+VDYLLG++    K
Sbjct:    1 MASTQCFLHHHALST-PARTPLVRSIVPSLKPNQLLVCRAQKQSAPQEDNVNSVSVSRRLALTVLIGAAAVGSKVSPADAAYGEAANVFGKPKTDTDFQTYNGDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQVDYLLGRQAYSGK 175          
BLAST of FC923429 vs. ExPASy Swiss-Prot
Match: PSBP_SINAL (Oxygen-evolving enhancer protein 2, chloroplastic OS=Sinapis alba GN=PSBP PE=2 SV=2)

HSP 1 Score: 232.646 bits (592), Expect = 3.255e-65
Identity = 117/170 (68.82%), Postives = 144/170 (84.71%), Query Frame = 1
Query:   46 MASTQCFLHHHALSTTPARTS---SSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDPNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKK 546
            MA + CFLH  AL+++ AR+S   SSQR+VS  K   +VC+AQ+    E+D S VSRRLALT+L+GAAAVGSKVSPADAAYGE+ANVFGKPK NTDF  Y+GDGF++ +P+KWNPS+E E+PGQVLRYEDNFD  SN++V++TPTDKKSITDYGSPEEFLS+V+YLLGK+
Sbjct:    1 MAYSACFLHQSALASSTARSSPSSSSQRYVSISK---LVCKAQQ--THEEDNSTVSRRLALTLLVGAAAVGSKVSPADAAYGEAANVFGKPKKNTDFTAYSGDGFQVQVPAKWNPSREVEYPGQVLRYEDNFDATSNLNVMVTPTDKKSITDYGSPEEFLSQVNYLLGKQ 165          

HSP 2 Score: 35.8094 bits (81), Expect = 3.255e-65
Identity = 16/23 (69.57%), Postives = 20/23 (86.96%), Query Frame = 3
Query:  531 LAGKKAYSGKTSSEGGFDPDAVA 599
            L GK+AY G+T+SEGGFD +AVA
Sbjct:  161 LLGKQAYFGETASEGGFDNNAVA 183          
BLAST of FC923429 vs. ExPASy Swiss-Prot
Match: PSBP3_TOBAC (Oxygen-evolving enhancer protein 2-3, chloroplastic OS=Nicotiana tabacum GN=PSBP3 PE=2 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.211e-64
Identity = 129/177 (72.88%), Postives = 147/177 (83.05%), Query Frame = 1
Query:   46 MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQI-VCRAQ-KQAVQEDDGS---AVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDPNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKKPIPAK 561
            MASTQCFLHHHALST PARTS  +  V ++K  Q+ VCRAQ KQ+  + D     +VSRRLALT+LIGAAAVGSKVSPADAAYGE+ANVFGKPKT+TDF  YNGDGFKL IPSKWNP+KE E+PGQVLR+EDNFD  SNV V ITPTDKKSITD+GSPE+FLS+VDYLLG++    K
Sbjct:    1 MASTQCFLHHHALST-PARTSLVRGIVPSLKSNQLLVCRAQNKQSAPQQDNVNSVSVSRRLALTLLIGAAAVGSKVSPADAAYGEAANVFGKPKTDTDFQTYNGDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQVDYLLGRQAYSGK 176          
The following BLAST results are available for this feature:
BLAST of FC923429 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
PSBP_CUCSA3.302e-7780.47Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP1_TOBAC7.999e-7678.03Oxygen-evolving enhancer protein 2-1, chloroplasti... [more]
PSBP1_ARATH4.694e-7374.71Oxygen-evolving enhancer protein 2-1, chloroplasti... [more]
PSBP_SOLTU1.358e-7277.25Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_SPIOL3.928e-7275.00Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_PEA6.683e-7278.44Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_SOLLC8.716e-7277.51Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP2_TOBAC8.117e-6773.86Oxygen-evolving enhancer protein 2-2, chloroplasti... [more]
PSBP_SINAL3.255e-6568.82Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP3_TOBAC2.211e-6472.88Oxygen-evolving enhancer protein 2-3, chloroplasti... [more]

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Properties
Property NameValue
Genbank descriptionC31704H10EF StrClemenN Citrus clementina cDNA clone C31704H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923429 ID=FC923429; Name=FC923429; organism=Citrus clementina; type=EST; length=601bp
GAGTGAACGAAAAAAAAAAAAAAAGGAAGAGAGCGAAAAGAAAAAATGGC
TTCAACTCAATGCTTCTTGCACCACCATGCACTCTCTACTACACCAGCAA
GAACATCATCATCTCAGCGCCACGTGTCAAACATCAAGCCCACCCAGATT
GTCTGCCGTGCGCAGAAGCAAGCTGTCCAAGAAGATGACGGCAGCGCCGT
CTCCCGCCGTTTGGCTCTGACGGTGCTCATTGGTGCTGCTGCCGTCGGCT
CCAAGGTCTCTCCTGCCGACGCTGCCTACGGTGAATCTGCCAATGTGTTT
GGTAAGCCAAAGACCAACACTGACTTCTTGCCATACAATGGAGATGGATT
CAAGCTGTCGATTCCCTCAAAATGGAACCCCAGCAAAGAGAGAGAGTTCC
CTGGTCAGGTTCTTAGATACGAAGACAACTTTGATCCCAACAGCAATGTC
TCCGTCATAATCACCCCAACTGACAAGAAATCCATCACTGACTACGGTTC
CCCCGAGGAATTCCTCAGTAAGGTGGACTACTTGCTGGGAAAAAAGCCTA
TTCCGGCAAAACTTCGTCTGAGGGTGGTTTCGACCCTGATGCTGTGGCAA
C
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