FC923430

Overview
NameFC923430
Unique NameFC923430
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923430 vs. ExPASy Swiss-Prot
Match: DCL4_ARATH (Dicer-like protein 4 OS=Arabidopsis thaliana GN=DCL4 PE=1 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 2.457e-51
Identity = 98/167 (58.68%), Postives = 127/167 (76.05%), Query Frame = 1
Query:    4 DSGFKAATAFLKWIGIQVEFEASQVTNICISSKSFLPLSASLDMATLEILLGHQFLHRGLLLQAFVHPSFNRLGG-CYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPPPTREVKEGPR 501
            DSGFK A  FLKWIG+ V+FE+ QV + CI+S+ +LPL+   ++ TLE  L ++FLH+GLL+QAF+HPS+NR GG CYQRLEFLGDAVLDYL+TSY ++V+PKLKPGQLTDLRS+ VNN+A ANVAV  S  +FL  +S  L E I +Y +++ + P      EGPR
Sbjct: 1178 DSGFKGAVKFLKWIGVNVDFESLQVQDACIASRRYLPLTTRNNLETLENQLDYKFLHKGLLVQAFIHPSYNRHGGGCYQRLEFLGDAVLDYLMTSYFFTVFPKLKPGQLTDLRSLSVNNEALANVAVSFSLKRFLFCESIYLHEVIEDYTNFLASSPLASGQSEGPR 1344          
BLAST of FC923430 vs. ExPASy Swiss-Prot
Match: DCL4_ORYSJ (Endoribonuclease Dicer homolog 4 OS=Oryza sativa subsp. japonica GN=DCL4 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 4.644e-42
Identity = 89/166 (53.61%), Postives = 116/166 (69.88%), Query Frame = 1
Query:    4 DSGFKAATAFLKWIGIQVEFEASQVTNICISSKSFLPLSASLDMATLEILLGHQFLHRGLLLQAFVHPSFNR-LGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPPPTREVKEGP 498
            + GFKAA AFL WIGI V+F    +  +  SS   L L    D+A LE L+G++F H+GLLLQAFVHPSF++  GGCYQRLEFLGDAVL+Y+ITSYLYS YP +KPGQ+TDLRS+ V N + A  AV++S +K LI DSN L+  I+ +  Y+      +++ E P
Sbjct: 1171 EGGFKAAFAFLHWIGIDVDFNNPALYRVLDSSSINLSLMDYTDIAGLEELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQRLEFLGDAVLEYVITSYLYSTYPDIKPGQITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISKFEMYVKLSNSEKDLLEEP 1336          
BLAST of FC923430 vs. ExPASy Swiss-Prot
Match: DCL3A_ORYSJ (Endoribonuclease Dicer homolog 3a OS=Oryza sativa subsp. japonica GN=DCL3A PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 4.985e-28
Identity = 69/152 (45.39%), Postives = 94/152 (61.84%), Query Frame = 1
Query:   10 GFKAATAFLKWIGIQVEFEASQVTNICISS--KSFLPLSASLDMATLEILLGHQFLHRGLLLQAFVHPSFNRLGG--CYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVD 453
            G +AA A LKW+GI  E E   +    +S+  +++LP     +M  LE  LG+ F  +GLL++A  HPS   LG   CY+RLEFLGDAVLD L+T YL++ +     G+LTDLRS  VNN+ FA VAV  +F+ FL   S +L + I  YV+
Sbjct: 1200 GLRAAMAVLKWLGIGAEIEEDLIVQAILSASVQTYLPKDNVFEM--LEAKLGYSFSVKGLLVEALTHPSQQELGAKYCYERLEFLGDAVLDILLTRYLFNSHKDTNEGELTDLRSASVNNENFAQVAVKHNFHHFLQHSSGLLLDQITEYVN 1349          
BLAST of FC923430 vs. ExPASy Swiss-Prot
Match: DCL3B_ORYSJ (Endoribonuclease Dicer homolog 3b OS=Oryza sativa subsp. japonica GN=DCL3B PE=2 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 5.159e-25
Identity = 61/149 (40.94%), Postives = 86/149 (57.72%), Query Frame = 1
Query:   10 GFKAATAFLKWIGIQVEFEASQVTNICISSKSFLPLSASLDMATLEILLGHQFLHRGLLLQAFVHPSFNRLGG--CYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYV 450
            G  AA   ++W GI ++ +   +  +  ++     LS   D+  LE  L + F  +GLLL+A  HPS   LG   CYQRLEFLGD+VLD L+T +LY+ +  + PG+LTDLRS LV+N+ FA   V  + +  L   S +L E I  YV
Sbjct: 1200 GIAAALWVMRWFGIDIKCDMKLLQEVKFNASHLCSLSKINDIEELEAKLKYNFSVKGLLLEAITHPSLQELGVDYCYQRLEFLGDSVLDLLLTRHLYATHTDVDPGELTDLRSALVSNENFAQAVVRNNIHSHLQHGSGILLEQITEYV 1348          
BLAST of FC923430 vs. ExPASy Swiss-Prot
Match: DICER_ARATH (Endoribonuclease Dicer homolog OS=Arabidopsis thaliana GN=CAF PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 2.560e-24
Identity = 63/150 (42.00%), Postives = 87/150 (58.00%), Query Frame = 1
Query:    4 DSGFKAATAFLKWIGIQVEFEASQVTNICISSKSFLPLSASLDMATLEILLGHQFLHRGLLLQAFVHPSFNRLG-GCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYV 450
            + G  AA   +KWIGI VE +  +V     +      +  S+D   LE  L ++F  +GLL++A  H S    G  CYQRLEF+GDAVLD+LIT +L+  Y  L PG+LTDLR+  VNN+ FA VAV    + +L   S+ L + I  +V
Sbjct: 1516 EGGKIAANHLMKWIGIHVEDDPDEVDGTLKNVNVPESVLKSIDFVGLERALKYEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQIREFV 1665          
BLAST of FC923430 vs. ExPASy Swiss-Prot
Match: DCL2B_ORYSJ (Endoribonuclease Dicer homolog 2b OS=Oryza sativa subsp. japonica GN=DCL2B PE=2 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 5.704e-24
Identity = 63/157 (40.13%), Postives = 88/157 (56.05%), Query Frame = 1
Query:    7 SGFKAATAFLKWIGIQVEFEASQVTNICISSKSFLPLSASLDMATLEILLGHQFLHRGLLLQAFVHPSFNRLG--GCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPP 471
            +G KAA   +K +G+ +EF     T I +  K  +     +D+ +LE +LG++F    LLL+A  H S+   G   CYQRLEFLGDA+LD+L T Y YS YP   P  LTDLRS  VNN  +A+ AV     K ++  S+ L   ++ Y+    T P
Sbjct: 1094 AGEKAAFLLMKSLGMNIEFH----TEIPVERKISMKAEEFIDVRSLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFTEYYYSKYPDCTPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLGQSFTGP 1246          
BLAST of FC923430 vs. ExPASy Swiss-Prot
Match: DCL2A_ORYSJ (Endoribonuclease Dicer homolog 2a OS=Oryza sativa subsp. japonica GN=DCL2A PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 8.236e-23
Identity = 60/151 (39.74%), Postives = 87/151 (57.62%), Query Frame = 1
Query:    7 SGFKAATAFLKWIGIQVEFEASQVTNICISSKSFLPLSASLDMATLEILLGHQFLHRGLLLQAFVHPSFNRLG--GCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVD 453
            +G KAA   +K +G+ +EF     T I +  K  +     +++ +LE +LG++F    LLL+A  H S+   G   CYQRLEFLGDA+LD+L T Y YS YP   P  LTDLRS  VNN  +A+ AV     K ++  S+ L   ++ Y++
Sbjct: 1123 AGEKAAFLLMKSLGMNIEFH----TEIPVERKISMKAEEFINVRSLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFTEYYYSKYPDCTPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLE 1269          
BLAST of FC923430 vs. ExPASy Swiss-Prot
Match: DCL1_ORYSJ (Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp. japonica GN=DCL1 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.130e-22
Identity = 63/148 (42.57%), Postives = 88/148 (59.46%), Query Frame = 1
Query:   19 AATAFLKWIGIQVEFEASQVTNICISSKSF-LPLSA--SLDMATLEILLGHQFLHRGLLLQAFVHPSFNRLG-GCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYV 450
            AA   +KWIGI  E +  ++       K + +P S   S++  TL+ +LG +F ++GLL++A  H S    G  CYQRLEF+GDAVLD+LIT +L+  Y  L PG+LTDLR+  VNN+ FA VAV    +  L   S+ L   I  +V
Sbjct: 1501 AANHLMKWIGIHAELDPEEIP----PPKPYDIPESIMRSINFDTLKGVLGIEFQNKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALETQIREFV 1644          
BLAST of FC923430 vs. ExPASy Swiss-Prot
Match: DCR1_DROME (Endoribonuclease Dcr-1 OS=Drosophila melanogaster GN=Dcr-1 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.649e-21
Identity = 56/101 (55.45%), Postives = 68/101 (67.33%), Query Frame = 1
Query:  154 LGHQFLHRGLLLQAFVHPSF--NRLGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYV 450
            LG++F  R  LLQA  H S+  NRL  CYQRLEFLGDAVLDYLIT +LY    +  PG LTDLRS LVNN  FA++AV   F+KF    S  L++ I+ +V
Sbjct: 2000 LGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFV 2100          
BLAST of FC923430 vs. ExPASy Swiss-Prot
Match: DCR1_CAEEL (Endoribonuclease dcr-1 OS=Caenorhabditis elegans GN=dcr-1 PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 1.315e-20
Identity = 55/105 (52.38%), Postives = 67/105 (63.81%), Query Frame = 1
Query:  142 LEILLGHQFLHRGLLLQAFVHPSF--NRLGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYV 450
            LE  +G++F  R  L+QAF H S+  NR+ GCYQRLEFLGDAVLDY+IT YL+    +  PG LTDLRS LVNN  FA++AV   F K  I     L   I  +V
Sbjct: 1581 LEEKIGYRFKERAYLVQAFTHASYINNRVTGCYQRLEFLGDAVLDYMITRYLFEDSRQYSPGVLTDLRSALVNNTIFASLAVKFEFQKHFIAMCPGLYHMIEKFV 1685          
The following BLAST results are available for this feature:
BLAST of FC923430 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
DCL4_ARATH2.457e-5158.68Dicer-like protein 4 OS=Arabidopsis thaliana GN=DC... [more]
DCL4_ORYSJ4.644e-4253.61Endoribonuclease Dicer homolog 4 OS=Oryza sativa s... [more]
DCL3A_ORYSJ4.985e-2845.39Endoribonuclease Dicer homolog 3a OS=Oryza sativa ... [more]
DCL3B_ORYSJ5.159e-2540.94Endoribonuclease Dicer homolog 3b OS=Oryza sativa ... [more]
DICER_ARATH2.560e-2442.00Endoribonuclease Dicer homolog OS=Arabidopsis thal... [more]
DCL2B_ORYSJ5.704e-2440.13Endoribonuclease Dicer homolog 2b OS=Oryza sativa ... [more]
DCL2A_ORYSJ8.236e-2339.74Endoribonuclease Dicer homolog 2a OS=Oryza sativa ... [more]
DCL1_ORYSJ3.130e-2242.57Endoribonuclease Dicer homolog 1 OS=Oryza sativa s... [more]
DCR1_DROME2.649e-2155.45Endoribonuclease Dcr-1 OS=Drosophila melanogaster ... [more]
DCR1_CAEEL1.315e-2052.38Endoribonuclease dcr-1 OS=Caenorhabditis elegans G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31704H11EF StrClemenN Citrus clementina cDNA clone C31704H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923430 ID=FC923430; Name=FC923430; organism=Citrus clementina; type=EST; length=502bp
GATGATAGTGGCTTCAAAGCTGCTACTGCATTTCTTAAATGGATTGGCAT
ACAAGTGGAATTTGAAGCTTCACAAGTTACTAATATATGCATATCGAGCA
AGAGCTTCTTGCCACTGAGTGCTTCCTTGGATATGGCCACCCTTGAAATT
TTGTTAGGGCATCAATTTCTCCATAGAGGTTTGCTCTTGCAGGCTTTTGT
GCATCCGTCTTTCAACAGGCTTGGAGGCTGCTATCAGAGATTGGAATTCC
TAGGAGATGCTGTGCTGGATTACTTGATCACTTCATATCTATATTCAGTC
TATCCAAAGTTAAAGCCTGGTCAGTTGACAGATTTGAGGTCAATGTTAGT
GAATAATCAAGCCTTTGCCAATGTTGCAGTTGATCAATCCTTCTACAAAT
TTCTTATCTTTGATTCCAATGTCCTATCTGAGACTATAAACAATTATGTG
GACTATATGATAACACCTCCCCCCACAAGGGAAGTGAAAGAAGGGCCAAG
AT
back to top