FC923430
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC923430 vs. ExPASy Swiss-Prot
Match: DCL4_ARATH (Dicer-like protein 4 OS=Arabidopsis thaliana GN=DCL4 PE=1 SV=1) HSP 1 Score: 201.06 bits (510), Expect = 2.457e-51 Identity = 98/167 (58.68%), Postives = 127/167 (76.05%), Query Frame = 1 Query: 4 DSGFKAATAFLKWIGIQVEFEASQVTNICISSKSFLPLSASLDMATLEILLGHQFLHRGLLLQAFVHPSFNRLGG-CYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPPPTREVKEGPR 501 DSGFK A FLKWIG+ V+FE+ QV + CI+S+ +LPL+ ++ TLE L ++FLH+GLL+QAF+HPS+NR GG CYQRLEFLGDAVLDYL+TSY ++V+PKLKPGQLTDLRS+ VNN+A ANVAV S +FL +S L E I +Y +++ + P EGPR Sbjct: 1178 DSGFKGAVKFLKWIGVNVDFESLQVQDACIASRRYLPLTTRNNLETLENQLDYKFLHKGLLVQAFIHPSYNRHGGGCYQRLEFLGDAVLDYLMTSYFFTVFPKLKPGQLTDLRSLSVNNEALANVAVSFSLKRFLFCESIYLHEVIEDYTNFLASSPLASGQSEGPR 1344
BLAST of FC923430 vs. ExPASy Swiss-Prot
Match: DCL4_ORYSJ (Endoribonuclease Dicer homolog 4 OS=Oryza sativa subsp. japonica GN=DCL4 PE=2 SV=1) HSP 1 Score: 170.244 bits (430), Expect = 4.644e-42 Identity = 89/166 (53.61%), Postives = 116/166 (69.88%), Query Frame = 1 Query: 4 DSGFKAATAFLKWIGIQVEFEASQVTNICISSKSFLPLSASLDMATLEILLGHQFLHRGLLLQAFVHPSFNR-LGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPPPTREVKEGP 498 + GFKAA AFL WIGI V+F + + SS L L D+A LE L+G++F H+GLLLQAFVHPSF++ GGCYQRLEFLGDAVL+Y+ITSYLYS YP +KPGQ+TDLRS+ V N + A AV++S +K LI DSN L+ I+ + Y+ +++ E P Sbjct: 1171 EGGFKAAFAFLHWIGIDVDFNNPALYRVLDSSSINLSLMDYTDIAGLEELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQRLEFLGDAVLEYVITSYLYSTYPDIKPGQITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISKFEMYVKLSNSEKDLLEEP 1336
BLAST of FC923430 vs. ExPASy Swiss-Prot
Match: DCL3A_ORYSJ (Endoribonuclease Dicer homolog 3a OS=Oryza sativa subsp. japonica GN=DCL3A PE=2 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 4.985e-28 Identity = 69/152 (45.39%), Postives = 94/152 (61.84%), Query Frame = 1 Query: 10 GFKAATAFLKWIGIQVEFEASQVTNICISS--KSFLPLSASLDMATLEILLGHQFLHRGLLLQAFVHPSFNRLGG--CYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVD 453 G +AA A LKW+GI E E + +S+ +++LP +M LE LG+ F +GLL++A HPS LG CY+RLEFLGDAVLD L+T YL++ + G+LTDLRS VNN+ FA VAV +F+ FL S +L + I YV+ Sbjct: 1200 GLRAAMAVLKWLGIGAEIEEDLIVQAILSASVQTYLPKDNVFEM--LEAKLGYSFSVKGLLVEALTHPSQQELGAKYCYERLEFLGDAVLDILLTRYLFNSHKDTNEGELTDLRSASVNNENFAQVAVKHNFHHFLQHSSGLLLDQITEYVN 1349
BLAST of FC923430 vs. ExPASy Swiss-Prot
Match: DCL3B_ORYSJ (Endoribonuclease Dicer homolog 3b OS=Oryza sativa subsp. japonica GN=DCL3B PE=2 SV=2) HSP 1 Score: 113.62 bits (283), Expect = 5.159e-25 Identity = 61/149 (40.94%), Postives = 86/149 (57.72%), Query Frame = 1 Query: 10 GFKAATAFLKWIGIQVEFEASQVTNICISSKSFLPLSASLDMATLEILLGHQFLHRGLLLQAFVHPSFNRLGG--CYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYV 450 G AA ++W GI ++ + + + ++ LS D+ LE L + F +GLLL+A HPS LG CYQRLEFLGD+VLD L+T +LY+ + + PG+LTDLRS LV+N+ FA V + + L S +L E I YV Sbjct: 1200 GIAAALWVMRWFGIDIKCDMKLLQEVKFNASHLCSLSKINDIEELEAKLKYNFSVKGLLLEAITHPSLQELGVDYCYQRLEFLGDSVLDLLLTRHLYATHTDVDPGELTDLRSALVSNENFAQAVVRNNIHSHLQHGSGILLEQITEYV 1348
BLAST of FC923430 vs. ExPASy Swiss-Prot
Match: DICER_ARATH (Endoribonuclease Dicer homolog OS=Arabidopsis thaliana GN=CAF PE=1 SV=2) HSP 1 Score: 111.309 bits (277), Expect = 2.560e-24 Identity = 63/150 (42.00%), Postives = 87/150 (58.00%), Query Frame = 1 Query: 4 DSGFKAATAFLKWIGIQVEFEASQVTNICISSKSFLPLSASLDMATLEILLGHQFLHRGLLLQAFVHPSFNRLG-GCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYV 450 + G AA +KWIGI VE + +V + + S+D LE L ++F +GLL++A H S G CYQRLEF+GDAVLD+LIT +L+ Y L PG+LTDLR+ VNN+ FA VAV + +L S+ L + I +V Sbjct: 1516 EGGKIAANHLMKWIGIHVEDDPDEVDGTLKNVNVPESVLKSIDFVGLERALKYEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQIREFV 1665
BLAST of FC923430 vs. ExPASy Swiss-Prot
Match: DCL2B_ORYSJ (Endoribonuclease Dicer homolog 2b OS=Oryza sativa subsp. japonica GN=DCL2B PE=2 SV=2) HSP 1 Score: 110.153 bits (274), Expect = 5.704e-24 Identity = 63/157 (40.13%), Postives = 88/157 (56.05%), Query Frame = 1 Query: 7 SGFKAATAFLKWIGIQVEFEASQVTNICISSKSFLPLSASLDMATLEILLGHQFLHRGLLLQAFVHPSFNRLG--GCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPP 471 +G KAA +K +G+ +EF T I + K + +D+ +LE +LG++F LLL+A H S+ G CYQRLEFLGDA+LD+L T Y YS YP P LTDLRS VNN +A+ AV K ++ S+ L ++ Y+ T P Sbjct: 1094 AGEKAAFLLMKSLGMNIEFH----TEIPVERKISMKAEEFIDVRSLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFTEYYYSKYPDCTPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLGQSFTGP 1246
BLAST of FC923430 vs. ExPASy Swiss-Prot
Match: DCL2A_ORYSJ (Endoribonuclease Dicer homolog 2a OS=Oryza sativa subsp. japonica GN=DCL2A PE=2 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 8.236e-23 Identity = 60/151 (39.74%), Postives = 87/151 (57.62%), Query Frame = 1 Query: 7 SGFKAATAFLKWIGIQVEFEASQVTNICISSKSFLPLSASLDMATLEILLGHQFLHRGLLLQAFVHPSFNRLG--GCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVD 453 +G KAA +K +G+ +EF T I + K + +++ +LE +LG++F LLL+A H S+ G CYQRLEFLGDA+LD+L T Y YS YP P LTDLRS VNN +A+ AV K ++ S+ L ++ Y++ Sbjct: 1123 AGEKAAFLLMKSLGMNIEFH----TEIPVERKISMKAEEFINVRSLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFTEYYYSKYPDCTPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLE 1269
BLAST of FC923430 vs. ExPASy Swiss-Prot
Match: DCL1_ORYSJ (Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp. japonica GN=DCL1 PE=3 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 3.130e-22 Identity = 63/148 (42.57%), Postives = 88/148 (59.46%), Query Frame = 1 Query: 19 AATAFLKWIGIQVEFEASQVTNICISSKSF-LPLSA--SLDMATLEILLGHQFLHRGLLLQAFVHPSFNRLG-GCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYV 450 AA +KWIGI E + ++ K + +P S S++ TL+ +LG +F ++GLL++A H S G CYQRLEF+GDAVLD+LIT +L+ Y L PG+LTDLR+ VNN+ FA VAV + L S+ L I +V Sbjct: 1501 AANHLMKWIGIHAELDPEEIP----PPKPYDIPESIMRSINFDTLKGVLGIEFQNKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALETQIREFV 1644
BLAST of FC923430 vs. ExPASy Swiss-Prot
Match: DCR1_DROME (Endoribonuclease Dcr-1 OS=Drosophila melanogaster GN=Dcr-1 PE=1 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 2.649e-21 Identity = 56/101 (55.45%), Postives = 68/101 (67.33%), Query Frame = 1 Query: 154 LGHQFLHRGLLLQAFVHPSF--NRLGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYV 450 LG++F R LLQA H S+ NRL CYQRLEFLGDAVLDYLIT +LY + PG LTDLRS LVNN FA++AV F+KF S L++ I+ +V Sbjct: 2000 LGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFV 2100
BLAST of FC923430 vs. ExPASy Swiss-Prot
Match: DCR1_CAEEL (Endoribonuclease dcr-1 OS=Caenorhabditis elegans GN=dcr-1 PE=1 SV=2) HSP 1 Score: 98.9821 bits (245), Expect = 1.315e-20 Identity = 55/105 (52.38%), Postives = 67/105 (63.81%), Query Frame = 1 Query: 142 LEILLGHQFLHRGLLLQAFVHPSF--NRLGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYV 450 LE +G++F R L+QAF H S+ NR+ GCYQRLEFLGDAVLDY+IT YL+ + PG LTDLRS LVNN FA++AV F K I L I +V Sbjct: 1581 LEEKIGYRFKERAYLVQAFTHASYINNRVTGCYQRLEFLGDAVLDYMITRYLFEDSRQYSPGVLTDLRSALVNNTIFASLAVKFEFQKHFIAMCPGLYHMIEKFV 1685 The following BLAST results are available for this feature:
BLAST of FC923430 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 32
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC923430 ID=FC923430; Name=FC923430; organism=Citrus clementina; type=EST; length=502bpback to top |