FC923440

Overview
NameFC923440
Unique NameFC923440
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9346 contig Ccv1_Contig9346:10..742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923440 vs. ExPASy Swiss-Prot
Match: DHGY_CUCSA (Glycerate dehydrogenase OS=Cucumis sativus GN=HPR-A PE=2 SV=1)

HSP 1 Score: 351.673 bits (901), Expect = 5.064e-99
Identity = 172/199 (86.43%), Postives = 178/199 (89.45%), Query Frame = 1
Query:   64 MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPEVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTIGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ 660
            MAKPV IEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICT+KKTILSVEDI+ALIGDKCDGVIGQLTEDWGE LF+ALSRAGGKAFSNMAVGYNNVDVNAANKYG+AVGNTP V                 RRIVEADEFMRAG YDGWLPNLFVGNLLKGQT+GVIGAGRIGSAYARMMVEGFKMNLIY+DLYQ
Sbjct:    1 MAKPVQIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTEKKTILSVEDILALIGDKCDGVIGQLTEDWGEVLFSALSRAGGKAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGRYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYFDLYQ 199          

HSP 2 Score: 31.187 bits (69), Expect = 5.064e-99
Identity = 13/16 (81.25%), Postives = 15/16 (93.75%), Query Frame = 3
Query:  660 ATHLEKFVTAYGQFLK 707
            +T LEKFVTAYG+FLK
Sbjct:  200 STRLEKFVTAYGEFLK 215          
BLAST of FC923440 vs. ExPASy Swiss-Prot
Match: GYAR_PYRFU (Glyoxylate reductase OS=Pyrococcus furiosus GN=gyaR PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.714e-17
Identity = 62/185 (33.51%), Postives = 99/185 (53.51%), Query Frame = 1
Query:  106 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPEVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYD----GWLPNLFVGNLLKGQTIGVIGAGRIGSAYARMMVEGFKMNLIYY 648
            K +V  T+ +P    IN+L E++  VE+  +++ I   E ++  + D  D ++  L+E   + +F    R   +  +N AVGY+N+DV  A + GI V NTP+V                 R +V+ D+F+R+G +      W P  F+G  L G+TIG++G GRIG A AR   +GF M ++YY
Sbjct:    2 KPKVFITRAIP-ENGINML-EEEFEVEVWEEEREIPR-EKLLEKVKD-VDALVTMLSERIDQEVFENAPRL--RIVANYAVGYDNIDVEEATRRGIYVTNTPDVLTNATADHAFALLLATARHVVKGDKFVRSGEWKRKGIAWHPKWFLGYELYGKTIGIVGFGRIGQAIAR-RAKGFNMRILYY 179          
BLAST of FC923440 vs. ExPASy Swiss-Prot
Match: GYAR_KORCO (Glyoxylate reductase OS=Korarchaeum cryptofilum (strain OPF8) GN=gyaR PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.988e-17
Identity = 50/135 (37.04%), Postives = 74/135 (54.81%), Query Frame = 1
Query:  250 CDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPEVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYD-GWLPNLFVGNLLKGQTIGVIGAGRIGSAYARMMVEGFKMNLIYYD 651
            CD ++  LT+     +F A  +   +  +  AVGY+N+DV  A K GI V NTP V                 RR+VEAD ++R G +   W P + +G  + G+T+G++G GRIG+A AR   +GF M ++YYD
Sbjct:   46 CDALVSLLTDPIDAEVFEAAPKL--RIVAQYAVGYDNIDVKEATKRGIYVTNTPGVLTETTADFAFALLMAAARRVVEADRYVREGKWKVAWHPMMMLGYDVYGRTLGIVGMGRIGAAVAR-RAKGFGMRILYYD 177          
BLAST of FC923440 vs. ExPASy Swiss-Prot
Match: GYAR_THELI (Glyoxylate reductase OS=Thermococcus litoralis GN=gyaR PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.515e-17
Identity = 49/112 (43.75%), Postives = 65/112 (58.04%), Query Frame = 1
Query:  325 KAFSNMAVGYNNVDVNAANKYGIAVGNTPEVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYD----GWLPNLFVGNLLKGQTIGVIGAGRIGSAYARMMVEGFKMNLIYY 648
            K  +  AVGY+N+D+  A K GI V NTP V                 RRIVEAD F+R+G +     GW P +F+G  LKG+T+G++G GRIG A A+   +GF M +IYY
Sbjct:   69 KIIAQYAVGYDNIDIEEATKRGIYVTNTPGVLTDATADLAFALLLAVARRIVEADAFVRSGEWKKSEVGWHPLMFLGYGLKGKTLGIVGFGRIGQALAK-RAKGFGMKIIYY 179          
BLAST of FC923440 vs. ExPASy Swiss-Prot
Match: GYAR_THEON (Glyoxylate reductase OS=Thermococcus onnurineus (strain NA1) GN=gyaR PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.451e-16
Identity = 62/184 (33.70%), Postives = 98/184 (53.26%), Query Frame = 1
Query:  106 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPEVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYD----GWLPNLFVGNLLKGQTIGVIGAGRIGSAYARMMVEGFKMNLIY 645
            K +V+ T+ +P    I +L E    VE+   +  I S E ++  + D  D ++  L+E     +F A  R   K  +N AVGY+N+D+  A K G+ + NTP+V                 RR++EAD+F+R+G +      W P +F+G  + G+TIG++G GRIG A AR   +GF M ++Y
Sbjct:    2 KPKVLITRKIP-ENGIKMLREH-FEVEVWEDEHEI-SREVLLEKVRD-VDALVTMLSERIDAEVFDAAPRL--KIVANYAVGYDNIDIEEATKMGVYITNTPDVLTNATADMAWVLLLATARRLIEADKFVRSGEWKKRGVAWHPLMFLGYDVYGRTIGIVGFGRIGQAIAR-RAKGFGMRILY 178          
BLAST of FC923440 vs. ExPASy Swiss-Prot
Match: GYAR_PYRKO (Glyoxylate reductase OS=Pyrococcus kodakaraensis GN=gyaR PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.896e-16
Identity = 56/167 (33.53%), Postives = 88/167 (52.69%), Query Frame = 1
Query:  160 LIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPEVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYD----GWLPNLFVGNLLKGQTIGVIGAGRIGSAYARMMVEGFKMNLIYY 648
            ++++   VE+  +++ I   E ++  + D  D ++  L+E     +F A  R   +  +N AVGY+N+DV  A + GI V NTP+V                 RR++EAD F R+G +      W P  F+G  + G+TIG++G GRIG A AR    GF M ++YY
Sbjct:   18 MLKEHFEVEVWPEEREIPR-EVLLKKVRD-VDALVTMLSERIDSEVFDAAPRL--RIVANYAVGYDNIDVEEATRRGIYVTNTPDVLTDATADFAWTLLLATARRLIEADHFTRSGEWKRRGIAWHPRWFLGYDVYGKTIGIVGFGRIGQAVAR-RARGFGMRILYY 179          
BLAST of FC923440 vs. ExPASy Swiss-Prot
Match: GYAR_THEGJ (Glyoxylate reductase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=gyaR PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.233e-16
Identity = 57/167 (34.13%), Postives = 89/167 (53.29%), Query Frame = 1
Query:  160 LIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPEVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYD----GWLPNLFVGNLLKGQTIGVIGAGRIGSAYARMMVEGFKMNLIYY 648
            ++ +   VE+  +++ I   E ++  + D  D ++  L+E     +F    R   +  +N AVGY+NVDV  A + GI V NTP+V                 RR++EAD F R+G +      W P +F+G+ + G+TIG+IG GRIG A AR   +GF M ++YY
Sbjct:   18 MLREHFEVEVWPEEREIPR-EVLLEKVRD-VDALVTMLSERIDGEVFDNAPRL--RIVANYAVGYDNVDVEEATRRGIYVTNTPDVLTNATADFAWTLLLATARRLIEADSFTRSGEWKRKGIAWHPLMFLGHDVYGKTIGIIGFGRIGQAVAR-RAKGFGMRILYY 179          
BLAST of FC923440 vs. ExPASy Swiss-Prot
Match: GYAR_PYRHO (Glyoxylate reductase OS=Pyrococcus horikoshii GN=gyaR PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 7.203e-16
Identity = 53/167 (31.74%), Postives = 86/167 (51.50%), Query Frame = 1
Query:  160 LIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPEVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYD----GWLPNLFVGNLLKGQTIGVIGAGRIGSAYARMMVEGFKMNLIYY 648
            ++E +  VE+   +K I    +I+     + D ++  L+E   + +F    +   +  +N AVGY+N+D+  A K GI V NTP+V                 R +V+ D F+R+G +      W P  F+G  + G+TIG+IG GRIG A A+   +GF M ++YY
Sbjct:   18 MLEDEFEVEVWGDEKEI--PREILLKKVKEVDALVTMLSERIDKEVFENAPKL--RIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAK-RAKGFNMRILYY 179          
BLAST of FC923440 vs. ExPASy Swiss-Prot
Match: GYAR_THEPD (Glyoxylate reductase OS=Thermofilum pendens (strain Hrk 5) GN=gyaR PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.737e-15
Identity = 60/184 (32.61%), Postives = 91/184 (49.46%), Query Frame = 1
Query:  106 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPEVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDG-WLPNLFVGNLLKGQTIGVIGAGRIGSAYARMMVEGFKMNLIYYDL 654
            K  V    P PG      ++++ C V +   K    S E+++  I DK D ++  LT+     +  A      K  S  +VG++++D+  A K GI V +TP V                 RRIVEAD+ +R G +D  W P    G  LKG+TIG++G GRIG A A+ +   F + ++YYD+
Sbjct:    5 KVYVTRIIPEPGLS----MLKECCDVVVHESKDWPPSREELLRNIRDK-DALLCLLTDKIDAEVMDAAPNL--KVISTYSVGFDHIDIPEATKRGIYVTHTPGVLTDAVAEFTVGLILAVTRRIVEADKIIRTGQWDKPWNPYFLTGPELKGKTIGLVGLGRIGVATAKRL-SSFDVKILYYDI 180          
BLAST of FC923440 vs. ExPASy Swiss-Prot
Match: GYAR_PYRAB (Glyoxylate reductase OS=Pyrococcus abyssi GN=gyaR PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.098e-15
Identity = 55/167 (32.93%), Postives = 85/167 (50.90%), Query Frame = 1
Query:  160 LIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPEVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYD----GWLPNLFVGNLLKGQTIGVIGAGRIGSAYARMMVEGFKMNLIYY 648
            ++E++  VE+   ++ I   E ++  + D  D ++  L+E     +F    R   +  +N AVGY+N+DV  A K GI V NTP V                 R +V+ D+F R+G +      W P  F+G  + G+TIG+IG GRIG A A+    GF M ++YY
Sbjct:   19 MLEKEFEVEVWEDEREIPR-EILLEKVKD-VDALVTMLSERIDREVFERAPRL--RIVANYAVGYDNIDVEEATKRGIYVTNTPGVLTDATADLAFALLLATARHLVKGDKFTRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGFGRIGQAIAK-RARGFDMRILYY 180          
The following BLAST results are available for this feature:
BLAST of FC923440 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
DHGY_CUCSA5.064e-9986.43Glycerate dehydrogenase OS=Cucumis sativus GN=HPR-... [more]
GYAR_PYRFU1.714e-1733.51Glyoxylate reductase OS=Pyrococcus furiosus GN=gya... [more]
GYAR_KORCO4.988e-1737.04Glyoxylate reductase OS=Korarchaeum cryptofilum (s... [more]
GYAR_THELI6.515e-1743.75Glyoxylate reductase OS=Thermococcus litoralis GN=... [more]
GYAR_THEON1.451e-1633.70Glyoxylate reductase OS=Thermococcus onnurineus (s... [more]
GYAR_PYRKO1.896e-1633.53Glyoxylate reductase OS=Pyrococcus kodakaraensis G... [more]
GYAR_THEGJ3.233e-1634.13Glyoxylate reductase OS=Thermococcus gammatolerans... [more]
GYAR_PYRHO7.203e-1631.74Glyoxylate reductase OS=Pyrococcus horikoshii GN=g... [more]
GYAR_THEPD2.737e-1532.61Glyoxylate reductase OS=Thermofilum pendens (strai... [more]
GYAR_PYRAB6.098e-1532.93Glyoxylate reductase OS=Pyrococcus abyssi GN=gyaR ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31705A09EF StrClemenN Citrus clementina cDNA clone C31705A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923440 ID=FC923440; Name=FC923440; organism=Citrus clementina; type=EST; length=732bp
GGTTTTTCAAAGCACACGCTCTGTTTTTGGCACTTGGAACTTGAAACTGC
CAACTTAGCTTCAATGGCGAAGCCAGTTTCGATTGAAGTGTGGAACCCAA
ATGGAAAATACAGAGTTGTTAGTACCAAGCCTATGCCTGGAACCCGCTGG
ATCAATCTCTTAATCGAACAAGATTGCCGTGTTGAAATATGCACCCAGAA
GAAAACTATACTCTCTGTTGAAGATATCATTGCTTTGATTGGTGACAAGT
GCGATGGAGTCATTGGACAGTTGACAGAGGACTGGGGAGAGACTTTGTTT
GCTGCACTGAGTAGAGCAGGAGGAAAGGCTTTTAGTAACATGGCTGTTGG
TTACAACAATGTTGACGTTAATGCTGCTAACAAATATGGTATTGCTGTTG
GAAACACTCCTGAAGTACTTACAGAAACAACAGCAGAGTTAGCAGCTTCG
CTCTCTCTAGCGGCTGCAAGAAGAATTGTTGAAGCAGATGAGTTTATGAG
AGCTGGCTTATACGATGGATGGCTTCCAAATCTGTTCGTTGGGAACTTGC
TCAAGGGACAGACTATTGGTGTGATTGGAGCTGGTCGTATAGGATCTGCC
TATGCTAGAATGATGGTTGAAGGGTTCAAAATGAACCTCATTTACTATGA
TCTTTACCAGCTACACACTTGGAAAAGTTTGTCACAGCTTATGGTCAGTT
TCTAAAGCCATGGTGAACAACTGTCACTTGNA
back to top