FC923442

Overview
NameFC923442
Unique NameFC923442
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length763
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923442 vs. ExPASy Swiss-Prot
Match: ELMOA_DICDI (ELMO domain-containing protein A OS=Dictyostelium discoideum GN=elmoA PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.855e-20
Identity = 52/125 (41.60%), Postives = 73/125 (58.40%), Query Frame = 1
Query:  289 QEERLRYLQQRLEVPFDGSQVEHQDALKQLWRLAYPGRELPPLKSELWKEMGWQGTGPSTDFRGGGFISLENLIFFAKKYPDSFQRLLHKQDGTRAEWEYPFAVAGINISFMLIQMLDLQSGKPS 663
            Q  R + +  R  V F+    EH   L +LW L YPG +L    SE WK+MG+QGT P TDFR  G   L+NLI+FA+ Y + F+++++ Q   R E EYP A AGI ++F L   +  + G P+
Sbjct:  362 QRHRFQVITNRKNVTFNKESSEHDALLMKLWSLTYPGVKLESRVSEQWKQMGFQGTDPCTDFRAMGIWGLDNLIYFAQNYNEKFRKIVNSQI-DRKEREYPTATAGIVLTFELYNSI-FKMGTPN 484          
BLAST of FC923442 vs. ExPASy Swiss-Prot
Match: ELMOC_DICDI (ELMO domain-containing protein C OS=Dictyostelium discoideum GN=elmoC PE=4 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.013e-15
Identity = 44/123 (35.77%), Postives = 71/123 (57.72%), Query Frame = 1
Query:  277 LTPLQEERLRYLQQRLEVPFDGSQVEHQDALKQLWRLAYPGRELPPLKSELWKEMGWQGTGPSTDFRGGGFISLENLIFFAKKYPDSFQRLLHKQDGTRAEWEYPFAVAGINISFMLIQMLDL 645
            +T  Q + ++ L Q+    ++ +  +H++ LK LW L YP +E    KS LWK+ G+Q   P+ DFRG G + L NLI   + + D  Q +L +      + +YPFAVAGINIS ++ ++  +
Sbjct:  357 VTAKQSQTIKILFQKKSTIYESTNPDHEEYLKHLWSLLYPEQEFQK-KSPLWKKFGFQSDDPTRDFRGMGIMGLLNLIHLVQHHNDWVQEILAQ------DRDYPFAVAGINISNLIFEVFQI 472          
BLAST of FC923442 vs. ExPASy Swiss-Prot
Match: ELMOB_DICDI (ELMO domain-containing protein B OS=Dictyostelium discoideum GN=elmoB PE=4 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.728e-15
Identity = 35/111 (31.53%), Postives = 71/111 (63.96%), Query Frame = 1
Query:  310 LQQRLEVPFDGSQVEHQDALKQLWRLAYPGRELPPLKSELWKEMGWQGTGPSTDFRGGGFISLENLIFFAKKYPDSFQRLLHKQDGTRAEWEYPFAVAGINISFMLIQMLD 642
            ++++ ++P+D + +EH+ +L++LW    P        S+ W  +G+QG  P+TDFRG G + L+NLI+F+ ++ +  + +L     + ++  YPFA+ GINI+ +++ ++D
Sbjct:  110 IEKKQKIPYDNNNLEHEASLERLWEALLPDVRRSARLSKEWGTLGFQGMDPATDFRGMGILGLDNLIYFSTQHSEDAREIL---KNSNSKCCYPFAITGINITALVLNLID 217          
BLAST of FC923442 vs. ExPASy Swiss-Prot
Match: ELMD2_HUMAN (ELMO domain-containing protein 2 OS=Homo sapiens GN=ELMOD2 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.259e-14
Identity = 36/109 (33.03%), Postives = 64/109 (58.72%), Query Frame = 1
Query:  331 PFDGSQVEHQDALKQLWRLAYPGRELPPLKSELWKEMGWQGTGPSTDFRGGGFISLENLIFFAKKYPDSFQRLLHKQDGTRAEWEYPFAVAGINISFMLIQMLDLQSGK 657
            P+D   ++H++ L +LW L  P ++L    S+ W E+G+QG  P TDFRG G + L NL++F++ Y     ++L + +    +  Y +A+ GIN++ M   +L  ++ K
Sbjct:  119 PYDSDNLQHEELLMKLWNLLMPTKKLNARISKQWAEIGFQGDDPKTDFRGMGILGLINLVYFSENYTSEAHQILSRSN--HPKLGYSYAIVGINLTEMAYSLLKSEALK 225          
BLAST of FC923442 vs. ExPASy Swiss-Prot
Match: ELMD2_MOUSE (ELMO domain-containing protein 2 OS=Mus musculus GN=Elmod2 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.112e-13
Identity = 35/109 (32.11%), Postives = 63/109 (57.80%), Query Frame = 1
Query:  331 PFDGSQVEHQDALKQLWRLAYPGRELPPLKSELWKEMGWQGTGPSTDFRGGGFISLENLIFFAKKYPDSFQRLLHKQDGTRAEWEYPFAVAGINISFMLIQMLDLQSGK 657
            P+D +  +H+  L +LW L  P ++L    S+ W ++G+QG  P TDFRG G + L NL++F++ Y     ++L + +    +  Y +A+ GIN++ M   +L  ++ K
Sbjct:  119 PYDSANAQHEKMLLKLWSLLMPTKKLTARISKQWADIGFQGDDPKTDFRGMGILGLINLVYFSENYTSEAHQILSRSN--HPKLGYSYAIVGINLTEMAYSLLKSEALK 225          
BLAST of FC923442 vs. ExPASy Swiss-Prot
Match: ELMD2_BOVIN (ELMO domain-containing protein 2 OS=Bos taurus GN=ELMOD2 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.112e-13
Identity = 35/109 (32.11%), Postives = 63/109 (57.80%), Query Frame = 1
Query:  331 PFDGSQVEHQDALKQLWRLAYPGRELPPLKSELWKEMGWQGTGPSTDFRGGGFISLENLIFFAKKYPDSFQRLLHKQDGTRAEWEYPFAVAGINISFMLIQMLDLQSGK 657
            P+D   ++H+  L +LW L  P ++L    S+ W ++G+QG  P TDFRG G + L NL++F++ Y     ++L + +    +  Y +A+ GIN++ M   +L  ++ K
Sbjct:  119 PYDSDNLQHEKLLIKLWNLLMPTKKLKARISKQWADIGFQGDDPKTDFRGMGILGLINLVYFSENYTSEAHQILSRSN--HPKLGYSYAIVGINLTEMAYSLLKSEALK 225          
BLAST of FC923442 vs. ExPASy Swiss-Prot
Match: ELMD1_PONAB (ELMO domain-containing protein 1 OS=Pongo abelii GN=ELMOD1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.336e-12
Identity = 40/118 (33.90%), Postives = 62/118 (52.54%), Query Frame = 1
Query:  331 PFDGSQVEHQDALKQLWRLAYPGRELPPLKSELWKEMGWQGTGPSTDFRGGGFISLENLIFFAKKYPDSFQRLLHK------QDGTRAEWE---------YPFAVAGINISFMLIQML 639
            P+D    +H++ L +LW+   P   L    S+ W E+G+QG  P TDFRG G + L NL +FA++   + Q++L           ++AEWE         Y FA+ GINI+ +   +L
Sbjct:  126 PYDSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTDFRGMGLLGLYNLQYFAERDATAAQQVLSDSLHPKCSKFSKAEWEKKRMDKAIGYSFAIVGINITDLAYNLL 243          
BLAST of FC923442 vs. ExPASy Swiss-Prot
Match: ELMD1_MOUSE (ELMO domain-containing protein 1 OS=Mus musculus GN=Elmod1 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 8.875e-12
Identity = 40/118 (33.90%), Postives = 60/118 (50.85%), Query Frame = 1
Query:  331 PFDGSQVEHQDALKQLWRLAYPGRELPPLKSELWKEMGWQGTGPSTDFRGGGFISLENLIFFAKKYPDSFQRLLHK------QDGTRAEWE---------YPFAVAGINISFMLIQML 639
            P+D    +H++ L +LW L  P   L    S+ W E+G+QG  P TDFRG G + L NL +FA++     Q++L           ++ EWE         Y FA+ GINI+ +   +L
Sbjct:  126 PYDSDNPQHEEMLLKLWELLKPNTPLESRVSKQWCEIGFQGDDPKTDFRGMGLLGLYNLQYFAERDATVAQQVLSDSVHPKCSKFSKIEWEKKKMDKAIGYSFAIVGINITDLAYNLL 243          
BLAST of FC923442 vs. ExPASy Swiss-Prot
Match: ELMD1_BOVIN (ELMO domain-containing protein 1 OS=Bos taurus GN=ELMOD1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.977e-11
Identity = 39/117 (33.33%), Postives = 61/117 (52.14%), Query Frame = 1
Query:  334 FDGSQVEHQDALKQLWRLAYPGRELPPLKSELWKEMGWQGTGPSTDFRGGGFISLENLIFFAKKYPDSFQRLLHK------QDGTRAEWE---------YPFAVAGINISFMLIQML 639
            +D    +H++ L +LW+   P   L    S+ W E+G+QG  P TDFRG G + L NL +FA++   + Q++L           ++AEWE         Y FA+ GINI+ +   +L
Sbjct:  127 YDSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTDFRGMGLLGLYNLQYFAERDAAAAQQVLSDSLHPKCSKFSKAEWEKKRMDKAIGYSFAIVGINITDLAYNLL 243          
The following BLAST results are available for this feature:
BLAST of FC923442 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
ELMOA_DICDI8.855e-2041.60ELMO domain-containing protein A OS=Dictyostelium ... [more]
ELMOC_DICDI1.013e-1535.77ELMO domain-containing protein C OS=Dictyostelium ... [more]
ELMOB_DICDI1.728e-1531.53ELMO domain-containing protein B OS=Dictyostelium ... [more]
ELMD2_HUMAN3.259e-1433.03ELMO domain-containing protein 2 OS=Homo sapiens G... [more]
ELMD2_MOUSE2.112e-1332.11ELMO domain-containing protein 2 OS=Mus musculus G... [more]
ELMD2_BOVIN2.112e-1332.11ELMO domain-containing protein 2 OS=Bos taurus GN=... [more]
ELMD1_PONAB2.336e-1233.90ELMO domain-containing protein 1 OS=Pongo abelii G... [more]
ELMD1_MOUSE8.875e-1233.90ELMO domain-containing protein 1 OS=Mus musculus G... [more]
ELMD1_BOVIN1.977e-1133.33ELMO domain-containing protein 1 OS=Bos taurus GN=... [more]
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Properties
Property NameValue
Genbank descriptionC31705A12EF StrClemenN Citrus clementina cDNA clone C31705A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923442 ID=FC923442; Name=FC923442; organism=Citrus clementina; type=EST; length=763bp
GAGTCATCTGGGTATGATGGCTTGAGTGAGCCTTTGTTAGCTAATTATCA
AGATGGTGATCAGAGCCGTTCTGAGGGACACAGAGCAGAAGATCTTTGGG
ATGATGAGGAGAAGAAGGCACGCTTGCATTGGATGTTTATTTTCTCTCAG
TTGATCACACAATGGGCGCAATGGTTAGCTAATATTGTATTTGGATCTGG
GTCACTTATTGGCAGAATTTTGCCTCTAACTTCTGGCACCCAAAACGGAA
TAAGCGAGAAGCTTTTCCTACCATCTCTTACTCCTTTACAGGAAGAAAGG
CTTAGATATTTACAACAGAGGCTGGAAGTCCCCTTCGATGGATCACAAGT
AGAGCATCAAGATGCACTTAAACAGCTATGGAGGTTAGCTTATCCTGGTA
GAGAGTTGCCACCTCTGAAATCGGAGCTCTGGAAAGAAATGGGATGGCAA
GGGACAGGCCCTTCAACTGATTTTCGGGGTGGAGGATTTATATCACTGGA
GAATCTTATATTTTTCGCTAAGAAGTATCCGGACTCTTTTCAGAGATTGT
TACACAAACAAGACGGAACAAGAGCAGAATGGGAGTATCCCTTTGCTGTT
GCTGGCATCAACATTTCTTTTATGTTAATACAGATGTTGGATCTTCAATC
AGGAAAGCCATCTTCTTCAGCTGGTATCCGCTTTCTAGACTGCTTGAGAA
GACGAATGGCATCGACAACTTTATGTGTGGCCTTCGAATGATGAGCTCAT
GGCTGCAAACGGG
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