FC923449

Overview
NameFC923449
Unique NameFC923449
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923449 vs. ExPASy Swiss-Prot
Match: EXOS6_DANRE (Exosome complex exonuclease MTR3 OS=Danio rerio GN=exosc6 PE=2 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 4.417e-29
Identity = 84/226 (37.17%), Postives = 121/226 (53.54%), Query Frame = 2
Query:  125 TRKTRPPIFSGSDVDWLRPDS-----------RGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYS-NIGRLNCNVSYTTFATPIRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEE------ESYPD--GSLMIACMPSRYESHSLTXTGE 733
            T++ R P  S S + +L PD            RG    RP F R G V+ A GSAY E GNTK+I SV+GP+E+++        GRL C+     F+   RG   QGS+ +D S+ L ++L   + L  +P++ +DV  +VLE+ GS L   ++CAS+ALADAGI MYD+V   ++   G   L+DP   E      E Y D  G + +A +P+  +   L   GE
Sbjct:    5 TKRIRGPEESQSPLLFLSPDKAPKAPSSRQGVRGNGDVRPVFARCGLVSQAKGSAYIEAGNTKIICSVYGPKETERRDETDMKTGRLVCDFRLAPFSCVKRGAWIQGSEERDLSATLMESLRPGVCLHRYPRSQIDVNVMVLENDGSVLAHAVTCASMALADAGIEMYDIVLGCTLRQSGNACLVDPSYAEECGSWQEGYGDNQGCVTLALLPNLNQVSGLNADGE 230          
BLAST of FC923449 vs. ExPASy Swiss-Prot
Match: EXOS6_XENTR (Exosome complex exonuclease MTR3 OS=Xenopus tropicalis GN=exosc6 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.297e-24
Identity = 75/193 (38.86%), Postives = 108/193 (55.96%), Query Frame = 2
Query:  188 RGFHQCRPAFFRTGAVNSASGSAYAEFGN--TKVIVSVFGPRESKKAMMYSNI-GRLNCNVSYTTFAT--PIRGQ---GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVS-CLGKNLLIDP-VLEEESYPDGSLMIACMPSRYESHSLTXTGEW 736
            RG  + RP F R G ++ A GSAY E G+  TKV+ +V GPRE       +   GRL C++ +  F+   P  G    G   +     L ++LE A+ L+ +P+  V V+ LVLE  GS LP  +SCAS+ALADAGI M+DL     +S   G  LL+DP   EEE+   G++ ++ +P+  +   L  +GEW
Sbjct:   35 RGPSEPRPVFVRAGLLSQAKGSAYLEAGSGGTKVLCAVHGPRERGMGGERAETRGRLLCDLRWAPFSRRGPWSGSCPAGPSPRQAGLQLQESLEPAVRLDRYPRAEVIVWVLVLEDRGSALPAAVSCASLALADAGIEMFDLALGCGLSRGPGGELLLDPDDDEEEAGSGGTMSLSLLPTLNQVSGLISSGEW 227          
BLAST of FC923449 vs. ExPASy Swiss-Prot
Match: ECX1_CENSY (Probable exosome complex exonuclease 1 OS=Cenarchaeum symbiosum GN=CENSYa_1536 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.123e-23
Identity = 61/183 (33.33%), Postives = 103/183 (56.28%), Query Frame = 2
Query:  161 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGRLNCNVSYTTFATPIRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYPDGSLMIACMPS 697
            D + +R D R   + R      G +N+A+GSAY EFG+ K++  +FGPR+   K M+ +  G L C    + F+   R + +  +   + S ++ +ALE +++LE FP+T VDVF  VL++ G      ++ ASVALADAGI M D+V++ +   +   +++D   EE+      + +  MP+
Sbjct:   12 DENGIRCDGRKISETRRVEITAGVLNNANGSAYIEFGDNKILAGIFGPRDVHPKHMVRTETGILRCRYHMSPFSVSERKKPAPSRREIEISKVIKEALEPSLMLEQFPRTAVDVFIEVLQADGGSRCAALAAASVALADAGIPMRDMVSACAAGKVADTIVLDVNNEEDQAGQADMPVGYMPN 194          
BLAST of FC923449 vs. ExPASy Swiss-Prot
Match: ECX1_METTH (Probable exosome complex exonuclease 1 OS=Methanobacterium thermoautotrophicum GN=MTH_683 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.177e-23
Identity = 65/190 (34.21%), Postives = 103/190 (54.21%), Query Frame = 2
Query:  173 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYPDGSLMIACMPSRYESHSLTXTG 730
            +R D R F + RP     G +  A GS+Y EFG  K++V+V+GPRE++ + +   +   + C  +   F+   R + G D +  + S +  +AL  A+ILE FP++ +DVF  VLE+ G      I+ ASVALADAGI M D+V + +   +G  +++D   EE+      + +A +P   E   L   G
Sbjct:   16 VREDGRAFDELRPLKIEAGILERADGSSYLEFGGNKILVAVYGPREAQIRKLQRPDRAVIRCRYNMAPFSVEERKRPGPDRRSVEISKITAEALRPALILEKFPRSVIDVFIEVLEAEGGTRCAGITAASVALADAGIPMRDMVVACAAGKVGDQVVLDLSEEEDKEGQADVPVAILPRTREITLLQSDG 205          
BLAST of FC923449 vs. ExPASy Swiss-Prot
Match: ECX1_PYRFU (Probable exosome complex exonuclease 1 OS=Pyrococcus furiosus GN=PF1568 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.068e-23
Identity = 68/194 (35.05%), Postives = 107/194 (55.15%), Query Frame = 2
Query:  161 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGRLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYPDGSLMIACMPSRYESHSLTXTG 730
            D +  R D R  ++ RP   + G + +A+GSAY E+G  K+I +V+GPRE   K +   +   L    +   F+   R + G D +  + S ++  ALE A+ILE FP+T +DVF  VL++        I+ AS+ALADAGI M DLVA+ S   +   +++D   EE++Y +  + +A MP + +   L   G
Sbjct:   12 DENGRRLDGRKKYELRPIKMKVGVLKNANGSAYIEWGKNKIIAAVYGPREIHPKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSIEISKVIRGALEPALILEMFPRTAIDVFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACSAGKIEGEIVLDLNKEEDNYGEADVPVAIMPIKNDITLLQMDG 205          
BLAST of FC923449 vs. ExPASy Swiss-Prot
Match: ECX1_PYRHO (Probable exosome complex exonuclease 1 OS=Pyrococcus horikoshii GN=PH1549 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.376e-22
Identity = 67/194 (34.54%), Postives = 108/194 (55.67%), Query Frame = 2
Query:  161 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGRLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYPDGSLMIACMPSRYESHSLTXTG 730
            D +  R D R  ++ RP   + G + +A+GSAY E+G  K+I +V+GPRE   K +   +   L    +   F+   R + G D +  + S ++  ALE A+ILE FP+T++DVF  VL++        I+ AS+ALADAGI M DLVA+ +   +   +++D   EE++Y +  + +A MP + +   L   G
Sbjct:   12 DENGRRIDGRKKYELRPIKMKVGVLKNANGSAYIEWGRNKIIAAVYGPRELHSKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSIEISKVIKGALEPALILEMFPRTSIDVFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEADVPVAIMPLKNDITLLQMDG 205          
BLAST of FC923449 vs. ExPASy Swiss-Prot
Match: ECX1_HYPBU (Probable exosome complex exonuclease 1 OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=Hbut_0571 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.797e-22
Identity = 63/179 (35.20%), Postives = 100/179 (55.87%), Query Frame = 2
Query:  173 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLNCNVSYTTFATPIRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYPDGSLMIACMPS 697
            +R D R   Q RP     G +++A GSA  E+G T+VI +V+GPRE+  + +   +   + C      F+T  R   +  +   + S ++ +ALE  +I E +P+T +DV+  VL+S G      I+ AS+ALADAGI M DLVA V+V  +   L++D    E++Y +  + +A  PS
Sbjct:   24 IRHDGRLPEQLRPIRMEVGVLSNADGSALVEYGGTRVIAAVYGPREAHPRHVALPDRAIIRCRYHMAPFSTAERKTPAPTRREVELSKVIREALEAVVISELYPRTAIDVYMEVLQSDGGTRTAAITAASLALADAGIAMRDLVAGVAVGKVDGVLVLDIDEIEDNYAEADMPVAMAPS 202          
BLAST of FC923449 vs. ExPASy Swiss-Prot
Match: EXOS6_MOUSE (Exosome complex exonuclease MTR3 OS=Mus musculus GN=Exosc6 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.347e-22
Identity = 72/223 (32.29%), Postives = 109/223 (48.88%), Query Frame = 2
Query:  122 PTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNI------------GRLNCNVSYTTFATPIR----GQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCL---GKNLLIDPVLEEESYPDGSLMIACMPSRYESHSLTXTGE 733
            P     P +++  D +   P +R   + RP + R G ++ A GSAY E G TKV+ +V GPR+++     S              GRL C+     F+   R    G G + ++    L +ALE A+ L  +P+  ++V AL+LE GG  L   ++ A++ALADAG+ MYDLV    +S         L+DP   EE +    L +A MP   +   L  +GE
Sbjct:   11 PEESQPPQLYAAEDDE--TPAARDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGSGPAGAGGEAPAALRGRLLCDFRRAPFSGRRRRAPQGGGGEDRELGLALQEALEPAVRLGRYPRAQLEVSALLLEDGGCALAAALTAAALALADAGVEMYDLVVGCGLSLTPGPSPTWLLDPTRLEEEHSAAGLTVALMPVLNQVAGLLGSGE 231          
BLAST of FC923449 vs. ExPASy Swiss-Prot
Match: ECX1_SULAC (Probable exosome complex exonuclease 1 OS=Sulfolobus acidocaldarius GN=Saci_0610 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.347e-22
Identity = 63/179 (35.20%), Postives = 98/179 (54.75%), Query Frame = 2
Query:  173 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLNCNVSYTTFATPIRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYPDGSLMIACMPS 697
            LR D R   + RP     G + +A GSA  E GNTKVI +V+GP+E   + +   +   L      T F+T  R   +  +   + S ++ +ALE  I+L  FP+T +D+F  VL++      V +  AS+ALADAGI M DL+A V+V     +L++D   +E+ + +  + IA +PS
Sbjct:   15 LRTDGRKLDELRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPDKASLRVRYHMTPFSTDERKNPAPSRREIELSKVIREALESTILLNLFPRTVIDIFMEVLQADAGTRLVALMAASMALADAGIPMRDLIAGVAVGKADGSLVLDLNEQEDMWGEADMPIAVLPS 193          
BLAST of FC923449 vs. ExPASy Swiss-Prot
Match: ECX1_PYRAB (Probable exosome complex exonuclease 1 OS=Pyrococcus abyssi GN=PYRAB06100 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.004e-22
Identity = 67/194 (34.54%), Postives = 106/194 (54.64%), Query Frame = 2
Query:  161 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGRLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYPDGSLMIACMPSRYESHSLTXTG 730
            D +  R D R  ++ RP     G + +A+GSAY E+G  K+I +V+GPRE   K +   +   L    +   F+   R + G D +  + S ++  ALE A+ILE FP+T +DVF  VL++        I+ AS+ALADAGI M DLVA+ +   +   +++D   EE++Y +  + +A MP + +   L   G
Sbjct:   12 DENGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSIEISKVIKGALEPALILEMFPRTAIDVFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEADVPVAIMPLKNDITLLQMDG 205          
The following BLAST results are available for this feature:
BLAST of FC923449 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
EXOS6_DANRE4.417e-2937.17Exosome complex exonuclease MTR3 OS=Danio rerio GN... [more]
EXOS6_XENTR7.297e-2438.86Exosome complex exonuclease MTR3 OS=Xenopus tropic... [more]
ECX1_CENSY2.123e-2333.33Probable exosome complex exonuclease 1 OS=Cenarcha... [more]
ECX1_METTH6.177e-2334.21Probable exosome complex exonuclease 1 OS=Methanob... [more]
ECX1_PYRFU8.068e-2335.05Probable exosome complex exonuclease 1 OS=Pyrococc... [more]
ECX1_PYRHO1.376e-2234.54Probable exosome complex exonuclease 1 OS=Pyrococc... [more]
ECX1_HYPBU1.797e-2235.20Probable exosome complex exonuclease 1 OS=Hyperthe... [more]
EXOS6_MOUSE2.347e-2232.29Exosome complex exonuclease MTR3 OS=Mus musculus G... [more]
ECX1_SULAC2.347e-2235.20Probable exosome complex exonuclease 1 OS=Sulfolob... [more]
ECX1_PYRAB4.004e-2234.54Probable exosome complex exonuclease 1 OS=Pyrococc... [more]

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Properties
Property NameValue
Genbank descriptionC31705B07EF StrClemenN Citrus clementina cDNA clone C31705B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923449 ID=FC923449; Name=FC923449; organism=Citrus clementina; type=EST; length=739bp
GAAGTGAGAGCTTCGCGAGATGTTTTGAGGAAGTTACAAAGGAAGAAGAA
GCAAAACAAAGAGAATGGCAGCAAAGCCTAGTACTACAACAACAGCAAAA
GCCACGTACTCTCCGATTGACCCTACCAGAAAAACTCGCCCACCCATTTT
TTCTGGCTCCGATGTGGACTGGCTCCGACCCGACTCCCGTGGGTTTCACC
AGTGCAGACCCGCCTTTTTCCGCACTGGCGCTGTGAATTCAGCATCGGGG
TCTGCTTATGCTGAATTTGGAAACACCAAGGTGATTGTGTCCGTATTTGG
GCCCAGAGAAAGTAAGAAAGCAATGATGTATAGCAATATAGGTCGATTGA
ATTGTAATGTTAGCTATACAACTTTTGCTACCCCTATTCGTGGACAGGGA
TCGGACCACAAAGATTTTTCCTCTATGCTTCACAAAGCTTTGGAAGGTGC
AATAATATTGGAAACATTCCCTAAGACAACCGTGGATGTATTTGCATTGG
TTTTGGAATCTGGAGGCAGTGATCTCCCTGTGGTGATATCATGTGCTAGT
GTCGCCCTGGCGGATGCGGGCATTATGATGTATGACCTCGTTGCCTCTGT
TTCTGTGTCTTGCCTAGGGAAGAATCTTCTTATTGATCCAGTGCTGGAGG
AGGAAAGCTACCCAGACGGAAGTTTAATGATAGCTTGTATGCCTTCTCGT
TATGAAAGTCACTCATTGACGGNTACTGGGGAATGGTCA
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