FC923449
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC923449 vs. ExPASy Swiss-Prot
Match: EXOS6_DANRE (Exosome complex exonuclease MTR3 OS=Danio rerio GN=exosc6 PE=2 SV=2) HSP 1 Score: 128.257 bits (321), Expect = 4.417e-29 Identity = 84/226 (37.17%), Postives = 121/226 (53.54%), Query Frame = 2 Query: 125 TRKTRPPIFSGSDVDWLRPDS-----------RGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYS-NIGRLNCNVSYTTFATPIRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEE------ESYPD--GSLMIACMPSRYESHSLTXTGE 733 T++ R P S S + +L PD RG RP F R G V+ A GSAY E GNTK+I SV+GP+E+++ GRL C+ F+ RG QGS+ +D S+ L ++L + L +P++ +DV +VLE+ GS L ++CAS+ALADAGI MYD+V ++ G L+DP E E Y D G + +A +P+ + L GE Sbjct: 5 TKRIRGPEESQSPLLFLSPDKAPKAPSSRQGVRGNGDVRPVFARCGLVSQAKGSAYIEAGNTKIICSVYGPKETERRDETDMKTGRLVCDFRLAPFSCVKRGAWIQGSEERDLSATLMESLRPGVCLHRYPRSQIDVNVMVLENDGSVLAHAVTCASMALADAGIEMYDIVLGCTLRQSGNACLVDPSYAEECGSWQEGYGDNQGCVTLALLPNLNQVSGLNADGE 230
BLAST of FC923449 vs. ExPASy Swiss-Prot
Match: EXOS6_XENTR (Exosome complex exonuclease MTR3 OS=Xenopus tropicalis GN=exosc6 PE=2 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 7.297e-24 Identity = 75/193 (38.86%), Postives = 108/193 (55.96%), Query Frame = 2 Query: 188 RGFHQCRPAFFRTGAVNSASGSAYAEFGN--TKVIVSVFGPRESKKAMMYSNI-GRLNCNVSYTTFAT--PIRGQ---GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVS-CLGKNLLIDP-VLEEESYPDGSLMIACMPSRYESHSLTXTGEW 736 RG + RP F R G ++ A GSAY E G+ TKV+ +V GPRE + GRL C++ + F+ P G G + L ++LE A+ L+ +P+ V V+ LVLE GS LP +SCAS+ALADAGI M+DL +S G LL+DP EEE+ G++ ++ +P+ + L +GEW Sbjct: 35 RGPSEPRPVFVRAGLLSQAKGSAYLEAGSGGTKVLCAVHGPRERGMGGERAETRGRLLCDLRWAPFSRRGPWSGSCPAGPSPRQAGLQLQESLEPAVRLDRYPRAEVIVWVLVLEDRGSALPAAVSCASLALADAGIEMFDLALGCGLSRGPGGELLLDPDDDEEEAGSGGTMSLSLLPTLNQVSGLISSGEW 227
BLAST of FC923449 vs. ExPASy Swiss-Prot
Match: ECX1_CENSY (Probable exosome complex exonuclease 1 OS=Cenarchaeum symbiosum GN=CENSYa_1536 PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 2.123e-23 Identity = 61/183 (33.33%), Postives = 103/183 (56.28%), Query Frame = 2 Query: 161 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGRLNCNVSYTTFATPIRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYPDGSLMIACMPS 697 D + +R D R + R G +N+A+GSAY EFG+ K++ +FGPR+ K M+ + G L C + F+ R + + + + S ++ +ALE +++LE FP+T VDVF VL++ G ++ ASVALADAGI M D+V++ + + +++D EE+ + + MP+ Sbjct: 12 DENGIRCDGRKISETRRVEITAGVLNNANGSAYIEFGDNKILAGIFGPRDVHPKHMVRTETGILRCRYHMSPFSVSERKKPAPSRREIEISKVIKEALEPSLMLEQFPRTAVDVFIEVLQADGGSRCAALAAASVALADAGIPMRDMVSACAAGKVADTIVLDVNNEEDQAGQADMPVGYMPN 194
BLAST of FC923449 vs. ExPASy Swiss-Prot
Match: ECX1_METTH (Probable exosome complex exonuclease 1 OS=Methanobacterium thermoautotrophicum GN=MTH_683 PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 6.177e-23 Identity = 65/190 (34.21%), Postives = 103/190 (54.21%), Query Frame = 2 Query: 173 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYPDGSLMIACMPSRYESHSLTXTG 730 +R D R F + RP G + A GS+Y EFG K++V+V+GPRE++ + + + + C + F+ R + G D + + S + +AL A+ILE FP++ +DVF VLE+ G I+ ASVALADAGI M D+V + + +G +++D EE+ + +A +P E L G Sbjct: 16 VREDGRAFDELRPLKIEAGILERADGSSYLEFGGNKILVAVYGPREAQIRKLQRPDRAVIRCRYNMAPFSVEERKRPGPDRRSVEISKITAEALRPALILEKFPRSVIDVFIEVLEAEGGTRCAGITAASVALADAGIPMRDMVVACAAGKVGDQVVLDLSEEEDKEGQADVPVAILPRTREITLLQSDG 205
BLAST of FC923449 vs. ExPASy Swiss-Prot
Match: ECX1_PYRFU (Probable exosome complex exonuclease 1 OS=Pyrococcus furiosus GN=PF1568 PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 8.068e-23 Identity = 68/194 (35.05%), Postives = 107/194 (55.15%), Query Frame = 2 Query: 161 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGRLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYPDGSLMIACMPSRYESHSLTXTG 730 D + R D R ++ RP + G + +A+GSAY E+G K+I +V+GPRE K + + L + F+ R + G D + + S ++ ALE A+ILE FP+T +DVF VL++ I+ AS+ALADAGI M DLVA+ S + +++D EE++Y + + +A MP + + L G Sbjct: 12 DENGRRLDGRKKYELRPIKMKVGVLKNANGSAYIEWGKNKIIAAVYGPREIHPKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSIEISKVIRGALEPALILEMFPRTAIDVFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACSAGKIEGEIVLDLNKEEDNYGEADVPVAIMPIKNDITLLQMDG 205
BLAST of FC923449 vs. ExPASy Swiss-Prot
Match: ECX1_PYRHO (Probable exosome complex exonuclease 1 OS=Pyrococcus horikoshii GN=PH1549 PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.376e-22 Identity = 67/194 (34.54%), Postives = 108/194 (55.67%), Query Frame = 2 Query: 161 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGRLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYPDGSLMIACMPSRYESHSLTXTG 730 D + R D R ++ RP + G + +A+GSAY E+G K+I +V+GPRE K + + L + F+ R + G D + + S ++ ALE A+ILE FP+T++DVF VL++ I+ AS+ALADAGI M DLVA+ + + +++D EE++Y + + +A MP + + L G Sbjct: 12 DENGRRIDGRKKYELRPIKMKVGVLKNANGSAYIEWGRNKIIAAVYGPRELHSKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSIEISKVIKGALEPALILEMFPRTSIDVFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEADVPVAIMPLKNDITLLQMDG 205
BLAST of FC923449 vs. ExPASy Swiss-Prot
Match: ECX1_HYPBU (Probable exosome complex exonuclease 1 OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=Hbut_0571 PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.797e-22 Identity = 63/179 (35.20%), Postives = 100/179 (55.87%), Query Frame = 2 Query: 173 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLNCNVSYTTFATPIRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYPDGSLMIACMPS 697 +R D R Q RP G +++A GSA E+G T+VI +V+GPRE+ + + + + C F+T R + + + S ++ +ALE +I E +P+T +DV+ VL+S G I+ AS+ALADAGI M DLVA V+V + L++D E++Y + + +A PS Sbjct: 24 IRHDGRLPEQLRPIRMEVGVLSNADGSALVEYGGTRVIAAVYGPREAHPRHVALPDRAIIRCRYHMAPFSTAERKTPAPTRREVELSKVIREALEAVVISELYPRTAIDVYMEVLQSDGGTRTAAITAASLALADAGIAMRDLVAGVAVGKVDGVLVLDIDEIEDNYAEADMPVAMAPS 202
BLAST of FC923449 vs. ExPASy Swiss-Prot
Match: EXOS6_MOUSE (Exosome complex exonuclease MTR3 OS=Mus musculus GN=Exosc6 PE=2 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 2.347e-22 Identity = 72/223 (32.29%), Postives = 109/223 (48.88%), Query Frame = 2 Query: 122 PTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNI------------GRLNCNVSYTTFATPIR----GQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCL---GKNLLIDPVLEEESYPDGSLMIACMPSRYESHSLTXTGE 733 P P +++ D + P +R + RP + R G ++ A GSAY E G TKV+ +V GPR+++ S GRL C+ F+ R G G + ++ L +ALE A+ L +P+ ++V AL+LE GG L ++ A++ALADAG+ MYDLV +S L+DP EE + L +A MP + L +GE Sbjct: 11 PEESQPPQLYAAEDDE--TPAARDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGSGPAGAGGEAPAALRGRLLCDFRRAPFSGRRRRAPQGGGGEDRELGLALQEALEPAVRLGRYPRAQLEVSALLLEDGGCALAAALTAAALALADAGVEMYDLVVGCGLSLTPGPSPTWLLDPTRLEEEHSAAGLTVALMPVLNQVAGLLGSGE 231
BLAST of FC923449 vs. ExPASy Swiss-Prot
Match: ECX1_SULAC (Probable exosome complex exonuclease 1 OS=Sulfolobus acidocaldarius GN=Saci_0610 PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 2.347e-22 Identity = 63/179 (35.20%), Postives = 98/179 (54.75%), Query Frame = 2 Query: 173 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLNCNVSYTTFATPIRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYPDGSLMIACMPS 697 LR D R + RP G + +A GSA E GNTKVI +V+GP+E + + + L T F+T R + + + S ++ +ALE I+L FP+T +D+F VL++ V + AS+ALADAGI M DL+A V+V +L++D +E+ + + + IA +PS Sbjct: 15 LRTDGRKLDELRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPDKASLRVRYHMTPFSTDERKNPAPSRREIELSKVIREALESTILLNLFPRTVIDIFMEVLQADAGTRLVALMAASMALADAGIPMRDLIAGVAVGKADGSLVLDLNEQEDMWGEADMPIAVLPS 193
BLAST of FC923449 vs. ExPASy Swiss-Prot
Match: ECX1_PYRAB (Probable exosome complex exonuclease 1 OS=Pyrococcus abyssi GN=PYRAB06100 PE=1 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 4.004e-22 Identity = 67/194 (34.54%), Postives = 106/194 (54.64%), Query Frame = 2 Query: 161 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGRLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYPDGSLMIACMPSRYESHSLTXTG 730 D + R D R ++ RP G + +A+GSAY E+G K+I +V+GPRE K + + L + F+ R + G D + + S ++ ALE A+ILE FP+T +DVF VL++ I+ AS+ALADAGI M DLVA+ + + +++D EE++Y + + +A MP + + L G Sbjct: 12 DENGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSIEISKVIKGALEPALILEMFPRTAIDVFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEADVPVAIMPLKNDITLLQMDG 205 The following BLAST results are available for this feature:
BLAST of FC923449 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 35
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Sequences
The
following sequences are available for this feature:
EST sequence >FC923449 ID=FC923449; Name=FC923449; organism=Citrus clementina; type=EST; length=739bpback to top |