FC923450

Overview
NameFC923450
Unique NameFC923450
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC923450_ssr47 microsatellite FC923450_ssr47:47..58. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15532 contig Ccv1_Contig15532:12..735. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923450 vs. ExPASy Swiss-Prot
Match: CBBY_RHOCA (Protein cbbY OS=Rhodobacter capsulatus GN=cbbY PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.217e-13
Identity = 55/173 (31.79%), Postives = 85/173 (49.13%), Query Frame = 3
Query:  198 LQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNW--DPEFYDVLQNQIGGGKPKMRWYFKEHGWPSSTIFENPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFPCSDDVKQR 710
            L+ALIFD DG + E+E +HRQA+N+ F+           Q L+W    E Y  L    GG K +M  + +  G            +    AK+ DL +  KT+RY +II SG V   PGV  L+D AKA+G ++A+ +  T+++V   +         +  +     D+V Q+
Sbjct:    3 LKALIFDVDGTLAETEEVHRQAFNETFA----------AQGLDWYWSKEDYRTLLRTTGG-KERMAKHRENLG------------SGPSDAKIADLHKA-KTQRYVEIIASGQVGLLPGVAELIDRAKASGLRLAIATTTTRANVDALIAATFSKPAGDIFEVIAAGDEVAQK 151          
BLAST of FC923450 vs. ExPASy Swiss-Prot
Match: CBBY_RHOSH (Protein cbbY OS=Rhodobacter sphaeroides GN=cbbY PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.306e-11
Identity = 49/171 (28.65%), Postives = 78/171 (45.61%), Query Frame = 3
Query:  198 LQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPKMRWYFKEHGWPSSTIFENPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFPCSDDVKQR 710
            ++A++FD DG + E+E LHR+A+N+ F+   V           WD E Y  L    GG +   R+   + G P+       P+ D  +A         KTER+  ++  G +  RPG+  L+ EAK AG ++AV +  +  +V        G    E  D     D V ++
Sbjct:    2 IEAILFDVDGTLAETEELHRRAFNETFAALGV--------DWFWDREEYRELLTTTGGKERIARFLRHQKGDPAPL-----PIADIHRA---------KTERFVALMAEGEIALRPGIADLIAEAKRAGIRLAVATTTSLPNVEALCRACFGHPAREIFDVIAAGDMVAEK 150          
BLAST of FC923450 vs. ExPASy Swiss-Prot
Match: CBBYC_RALEH (Protein cbbY, chromosomal OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbbYC PE=3 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 3.933e-11
Identity = 45/160 (28.12%), Postives = 78/160 (48.75%), Query Frame = 3
Query:  198 LQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPKMRWYFKEHGWPSSTIFENPPVTDDDQAK------LIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGME 659
            +QALIFD DG + ++E  H QA+N AF+   +           WD   Y  L  ++ GGK ++  Y++              + D ++A+       ID +   KT  Y + + +G +  RPG+ RL+DEA  AG  +A+ +  T +++   L+  +G +
Sbjct:    1 MQALIFDVDGTLADTESAHLQAFNAAFAEVGL--------DWYWDAPLYTRLL-KVAGGKERLMHYWR--------------MVDPEEARGCKVKETIDAVHAIKTRHYAERVGAGGLPLRPGIARLIDEAGEAGLPLAIATTTTPANLDALLQAPLGAD 137          
The following BLAST results are available for this feature:
BLAST of FC923450 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
CBBY_RHOCA3.217e-1331.79Protein cbbY OS=Rhodobacter capsulatus GN=cbbY PE=... [more]
CBBY_RHOSH2.306e-1128.65Protein cbbY OS=Rhodobacter sphaeroides GN=cbbY PE... [more]
CBBYC_RALEH3.933e-1128.13Protein cbbY, chromosomal OS=Ralstonia eutropha (s... [more]
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Properties
Property NameValue
Genbank descriptionC31705B08EF StrClemenN Citrus clementina cDNA clone C31705B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923450 ID=FC923450; Name=FC923450; organism=Citrus clementina; type=EST; length=720bp
AAAAAATTCATGGCTTCTACGGTGATCCTCTCTCAACAGCAACTCTTTCT
TCTTCTTCTACTACTACTGCCAAATTTTCTTCTTTAACTCATAATCCTAT
CTTTCACACCAATGCTCTCCGTTTTAAAAGTAACAAGAAACCACTGTCCT
TATCTTTAACCAGAAAAGCACTTCGCGTGTCGGCTTCTTCACAGTCTCTT
CAGGCCCTCATATTTGACTGCGATGGTGTGATTATTGAATCCGAGCACTT
GCACCGCCAAGCTTACAATGATGCTTTCTCTCACTTCAATGTCCGCTGCG
ACCCTTCTTCTCAGCAGTCTCTCAATTGGGACCCCGAGTTTTATGACGTG
CTCCAGAATCAAATTGGGGGCGGTAAACCCAAAATGAGATGGTACTTTAA
AGAGCACGGGTGGCCATCTTCCACCATATTCGAGAATCCCCCAGTAACCG
ATGATGACCAAGCCAAGTTGATTGATCTAATTCAGGACTGGAAAACTGAA
CGGTACCAACAAATTATCAAATCTGGAACTGTGGAGCCTAGGCCAGGAGT
TCTGAGATTGATGGATGAAGCCAAGGCTGCTGGGAAAAAAGTAGCTGTTT
GCTCTGCAGCAACCAAAAGTTCAGTTATACTTTGTCTCGAAAACCTCATA
GGAATGGAGCGGTTTGAAGGTCTCGACTGCTTCCCTTGCAGTGATGATGT
NAAGCAAAGAAGCCTGATCC
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