FC923458

Overview
NameFC923458
Unique NameFC923458
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC923458 vs. ExPASy Swiss-Prot
Match: RS241_ARATH (40S ribosomal protein S24-1 OS=Arabidopsis thaliana GN=RPS24A PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 7.032e-60
Identity = 113/119 (94.96%), Postives = 119/119 (100.00%), Query Frame = 1 
Query:   88 KAVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIRGV 444
            KAVT+RTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKS+GFGLIYD+VE+AKKFEPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIRGV
Sbjct:    4 KAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIRGV 122
[Close]
BLAST of FC923458 vs. ExPASy Swiss-Prot
Match: RS242_ARATH (40S ribosomal protein S24-2 OS=Arabidopsis thaliana GN=RPS24B PE=2 SV=2)

HSP 1 Score: 226.098 bits (575), Expect = 1.326e-58
Identity = 110/119 (92.44%), Postives = 117/119 (98.32%), Query Frame = 1 
Query:   88 KAVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIRGV 444
            KAVT+RTR FMTNRLL+RKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIF FKFRTHFGGGKS+G+GLIYD+VENAKKFEPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIRGV
Sbjct:    4 KAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCFKFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIRGV 122
[Close]
BLAST of FC923458 vs. ExPASy Swiss-Prot
Match: RS24_RAT (40S ribosomal protein S24 OS=Rattus norvegicus GN=Rps24 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.629e-40
Identity = 85/122 (69.67%), Postives = 100/122 (81.97%), Query Frame = 1 
Query:   76 MADTKAVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIRG 441
            M DT  VT+RTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY+   P+ IFVF FRTHFGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:    1 MNDT--VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119
[Close]
BLAST of FC923458 vs. ExPASy Swiss-Prot
Match: RS24_PONAB (40S ribosomal protein S24 OS=Pongo abelii GN=RPS24 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.629e-40
Identity = 85/122 (69.67%), Postives = 100/122 (81.97%), Query Frame = 1 
Query:   76 MADTKAVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIRG 441
            M DT  VT+RTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY+   P+ IFVF FRTHFGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:    1 MNDT--VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119
[Close]
BLAST of FC923458 vs. ExPASy Swiss-Prot
Match: RS24_MOUSE (40S ribosomal protein S24 OS=Mus musculus GN=Rps24 PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.629e-40
Identity = 85/122 (69.67%), Postives = 100/122 (81.97%), Query Frame = 1 
Query:   76 MADTKAVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIRG 441
            M DT  VT+RTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY+   P+ IFVF FRTHFGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:    1 MNDT--VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119
[Close]
BLAST of FC923458 vs. ExPASy Swiss-Prot
Match: RS24_MESAU (40S ribosomal protein S24 OS=Mesocricetus auratus GN=RPS24 PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.629e-40
Identity = 85/122 (69.67%), Postives = 100/122 (81.97%), Query Frame = 1 
Query:   76 MADTKAVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIRG 441
            M DT  VT+RTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY+   P+ IFVF FRTHFGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:    1 MNDT--VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119
[Close]
BLAST of FC923458 vs. ExPASy Swiss-Prot
Match: RS24_HUMAN (40S ribosomal protein S24 OS=Homo sapiens GN=RPS24 PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.629e-40
Identity = 85/122 (69.67%), Postives = 100/122 (81.97%), Query Frame = 1 
Query:   76 MADTKAVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIRG 441
            M DT  VT+RTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY+   P+ IFVF FRTHFGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:    1 MNDT--VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119
[Close]
BLAST of FC923458 vs. ExPASy Swiss-Prot
Match: RS24_BOVIN (40S ribosomal protein S24 OS=Bos taurus GN=RPS24 PE=2 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 1.629e-40
Identity = 85/122 (69.67%), Postives = 100/122 (81.97%), Query Frame = 1 
Query:   76 MADTKAVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIRG 441
            M DT  VT+RTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY+   P+ IFVF FRTHFGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:    1 MNDT--VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119
[Close]
BLAST of FC923458 vs. ExPASy Swiss-Prot
Match: RS24_XENLA (40S ribosomal protein S24 OS=Xenopus laevis GN=rps24 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.628e-40
Identity = 84/122 (68.85%), Postives = 100/122 (81.97%), Query Frame = 1 
Query:   76 MADTKAVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIRG 441
            M DT  VT+RTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY+   P+ IFVF FRTHFGGGK+TGFG+IYDS++ AKK EPK+RL ++GL  K + SRKQ KERKNR KK+RG
Sbjct:    1 MNDT--VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLAKHGLYEKKKTSRKQRKERKNRMKKVRG 119
[Close]
BLAST of FC923458 vs. ExPASy Swiss-Prot
Match: RS24_MACFA (40S ribosomal protein S24 OS=Macaca fascicularis GN=RPS24 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.056e-39
Identity = 84/122 (68.85%), Postives = 99/122 (81.15%), Query Frame = 1 
Query:   76 MADTKAVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIRG 441
            M DT  VT+RTRKFMTNRLL RKQ VI VLHPG+A V K E++EKLA+MY+   P+ IFVF FRTHFGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:    1 MNDT--VTIRTRKFMTNRLLQRKQMVIGVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119
The following BLAST results are available for this feature:
BLAST of FC923458 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RS241_ARATH7.032e-6094.9640S ribosomal protein S24-1 OS=Arabidopsis thalian... [more]
RS242_ARATH1.326e-5892.4440S ribosomal protein S24-2 OS=Arabidopsis thalian... [more]
RS24_RAT1.629e-4069.6740S ribosomal protein S24 OS=Rattus norvegicus GN=... [more]
RS24_PONAB1.629e-4069.6740S ribosomal protein S24 OS=Pongo abelii GN=RPS24... [more]
RS24_MOUSE1.629e-4069.6740S ribosomal protein S24 OS=Mus musculus GN=Rps24... [more]
RS24_MESAU1.629e-4069.6740S ribosomal protein S24 OS=Mesocricetus auratus ... [more]
RS24_HUMAN1.629e-4069.6740S ribosomal protein S24 OS=Homo sapiens GN=RPS24... [more]
RS24_BOVIN1.629e-4069.6740S ribosomal protein S24 OS=Bos taurus GN=RPS24 P... [more]
RS24_XENLA3.628e-4068.8540S ribosomal protein S24 OS=Xenopus laevis GN=rps... [more]
RS24_MACFA1.056e-3968.8540S ribosomal protein S24 OS=Macaca fascicularis G... [more]

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Properties
Property NameValue
Genbank descriptionC31705C06EF StrClemenN Citrus clementina cDNA clone C31705C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923458 ID=FC923458; Name=FC923458; organism=Citrus clementina; type=EST; length=677bp
GATAGCATTCCAGTCCAAACGCGCCACAGAGCAAAGGAGTAAGCGAAGCG
GTCGAGGGAGAAAGAGATATCGTGCATGGCGGATACTAAGGCAGTGACTT
TACGTACGAGGAAGTTCATGACTAACCGTCTTCTGTCTAGGAAACAATTC
GTCATTGACGTTTTGCATCCCGGAAGAGCAAATGTTTCCAAGGCGGAGTT
GAAGGAGAAGCTGGCGAGGATGTATGAAGTTAAGGATCCAAATGCTATCT
TTGTTTTCAAGTTCAGAACCCATTTTGGAGGAGGAAAGTCCACTGGTTTC
GGTTTGATTTATGATTCTGTTGAGAATGCAAAGAAGTTTGAGCCAAAGTA
CAGGCTAATTCGGAATGGATTGGATACGAAGGTAGAGAAATCAAGAAAGC
AGTTGAAGGAAAGAAAGAACAGAGCCAAGAAGATACGAGGAGTAAAGAAG
ACAAAGGCCAGTGATGCTGCAAAGAAGAAGTGAAGCCTTTTGGGATTTTC
TGGTTATGCAACTCCACATGCAAGGAGTTTTCTCTTGGAGCAGCTTTCTG
CCCCTATTATTTTCTTTTACCGTTTTTGTAGTAAAAGTAAAACTAGTTTC
AGAACTTTAATTTCTAGCTTTAGTTGATGTTTGACTTGAGGTGATAGTGA
TGATATATAGAGCCGATTTTTGCATGC
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