FC923461

Overview
NameFC923461
Unique NameFC923461
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14536 contig Ccv1_Contig14536:29..743. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC923461 vs. ExPASy Swiss-Prot
Match: TL17_ARATH (Thylakoid lumenal 17.4 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=At5g53490 PE=1 SV=2)

HSP 1 Score: 298.516 bits (763), Expect = 2.318e-80
Identity = 155/235 (65.96%), Postives = 184/235 (78.30%), Query Frame = 1 
Query:   13 MATISVPLSHNTSSLQHLSTIRHRFHFPRSSHSPLTVACSA---RRNSSEPKESFSHLKELKGVACGFLAAWAVTAASPVIAANQRLPPLSTEPDRCERAFVGNTIGQANGVYDKPIDLRFCDYTNEKSNLKGKSLAAALMSDAKFDGADMSEVVMSKAYAVGASFKGVDFSNAVLDRVNFGKAHLEGAVFKNTVLSGSTFNEAQLQDAVFEDTIIGYIDLQKLCTNTTLSPDGR 708
            MA++ V  + N  S    S      +  R   S +TV CSA   R N    K+S   LKEL  +AC  L A  +T ASPVIAANQRLPPLSTEPDRCE+AFVGNTIGQANGVYDKP+DLRFCDYTN+++NLKGK+L+AALM  AKFDGADM+EVVMSKAYAV ASFKGV+F+NAV+DRVNFGK++L+GAVF+NTVLSGSTF EA L+D VFEDTIIGYIDLQK+C N +++ +GR
Sbjct:    1 MASLPVQFTRNQISSPFFSV-----NLRREPRSLVTVHCSAGENRENGEGVKKSLFPLKELGSIACAALCACTLTIASPVIAANQRLPPLSTEPDRCEKAFVGNTIGQANGVYDKPLDLRFCDYTNDQTNLKGKTLSAALMVGAKFDGADMTEVVMSKAYAVEASFKGVNFTNAVIDRVNFGKSNLKGAVFRNTVLSGSTFEEANLEDVVFEDTIIGYIDLQKICRNESINEEGR 230
The following BLAST results are available for this feature:
BLAST of FC923461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TL17_ARATH2.318e-8065.96Thylakoid lumenal 17.4 kDa protein, chloroplastic ... [more]
back to top
Properties
Property NameValue
Genbank descriptionC31705C10EF StrClemenN Citrus clementina cDNA clone C31705C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923461 ID=FC923461; Name=FC923461; organism=Citrus clementina; type=EST; length=715bp
GACAACCAACAGATGGCTACCATTTCAGTTCCCCTCTCTCATAACACTTC
ATCTCTTCAACATTTATCCACTATACGCCACCGTTTTCACTTTCCCAGAT
CGTCCCATTCACCCCTCACAGTCGCTTGCTCTGCTAGAAGAAATTCCTCA
GAACCAAAGGAAAGCTTTTCTCATTTAAAGGAACTCAAGGGCGTAGCTTG
TGGCTTTCTTGCTGCTTGGGCTGTAACGGCTGCCTCACCCGTCATTGCTG
CTAATCAGAGGCTGCCCCCGCTTTCAACAGAGCCTGATCGATGTGAGCGT
GCATTTGTTGGAAACACGATTGGTCAAGCAAATGGCGTTTACGACAAGCC
AATTGATCTGCGCTTCTGTGATTACACTAATGAAAAATCCAACCTCAAGG
GGAAGTCTCTTGCGGCAGCACTCATGTCTGATGCAAAGTTTGATGGTGCG
GATATGTCAGAAGTGGTTATGTCAAAGGCTTACGCTGTAGGAGCAAGCTT
CAAGGGTGTAGACTTCTCGAATGCTGTTTTAGACCGGGTAAATTTTGGGA
AAGCACATCTTGAAGGAGCTGTTTTCAAGAATACTGTATTATCTGGCTCC
ACTTTTAATGAAGCTCAACTACAAGATGCAGTTTTTGAGGACACAATTAT
AGGCTACATTGATCTCCAGAAGCTGTGTACAAATACAACTCTCAGTCCTG
ATGGAAGAGCTGAAT
back to top