FC923462

Overview
NameFC923462
Unique NameFC923462
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14470 contig Ccv1_Contig14470:1..693. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923462 vs. ExPASy Swiss-Prot
Match: SGAT_ARATH (Serine--glyoxylate aminotransferase OS=Arabidopsis thaliana GN=AGT1 PE=1 SV=2)

HSP 1 Score: 353.214 bits (905), Expect = 7.514e-105
Identity = 166/194 (85.57%), Postives = 182/194 (93.81%), Query Frame = 1
Query:    7 HTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKVPSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPPHINSSEIVRRAWQR 588
            HTIKAICIVHNETATGVTN++S VR LLD Y+HPAL LVDGVSSICA+DFRMDEWG+DVALTGSQK  SLPTG+GIVCASPKALEA+KT+KS++VFFDW DY+KFY LGT+WPYTPSIQLLYGLRAALDLIFEEGLEN+I RH RLGKATRLAVEAWGLKNCTQKEEW S+TVTAV+VPPHI+ SEIVRRAWQR
Sbjct:  136 HTIKAICIVHNETATGVTNDISAVRTLLDHYKHPALLLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEATKTSKSLKVFFDWNDYLKFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENIIARHARLGKATRLAVEAWGLKNCTQKEEWISNTVTAVMVPPHIDGSEIVRRAWQR 329          

HSP 2 Score: 49.2914 bits (116), Expect = 7.514e-105
Identity = 22/25 (88.00%), Postives = 25/25 (100.00%), Query Frame = 3
Query:  618 QVAGKVFRIGHLGHLNELQLLGCLA 692
            +VAGKVFRIGHLG++NELQLLGCLA
Sbjct:  340 KVAGKVFRIGHLGNVNELQLLGCLA 364          
BLAST of FC923462 vs. ExPASy Swiss-Prot
Match: SGAA_METEA (Serine--glyoxylate aminotransferase OS=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) GN=sgaA PE=3 SV=2)

HSP 1 Score: 213.772 bits (543), Expect = 1.082e-61
Identity = 105/199 (52.76%), Postives = 140/199 (70.35%), Query Frame = 1
Query:    7 HTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKVPSLPTGMGIVCASPKALEAS-----KTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPPHINSSEIVRRAWQR 588
            H IKA+ +VHNETATGVT+N+  VRK +D   HPAL  VDGVSSI ++ F+ DEW +D A+ GSQK   LP G+G++C S KAL+A+     +  +  RV+FDW+D  K  N   ++PYTP + LLYGLR AL  +FEEGLENV  RH  LG+ATR AV AWGLK C +  EW SDTVTA++ P  +++++I++ A+ R
Sbjct:  136 HEIKAVMVVHNETATGVTSNIGAVRKAIDAAGHPALLFVDGVSSIGSLPFKADEWKVDCAIAGSQKGLMLPAGLGVICVSQKALKAAEGQSGRNDRLARVYFDWEDQ-KKQNPTGYFPYTPPLPLLYGLREALACLFEEGLENVYHRHAVLGEATRQAVAAWGLKTCAKSPEWNSDTVTAILAPEGVDAAKIIKHAYVR 333          

HSP 2 Score: 44.669 bits (104), Expect = 1.082e-61
Identity = 22/31 (70.97%), Postives = 25/31 (80.65%), Query Frame = 3
Query:  600 LRSGP*QVAGKVFRIGHLGHLNELQLLGCLA 692
            L +G  QVAGKVFRIGH+G LNEL LLG +A
Sbjct:  338 LGAGLSQVAGKVFRIGHVGDLNELSLLGAIA 368          
BLAST of FC923462 vs. ExPASy Swiss-Prot
Match: SGAA_HYPME (Serine--glyoxylate aminotransferase OS=Hyphomicrobium methylovorum GN=sgaA PE=3 SV=2)

HSP 1 Score: 208.379 bits (529), Expect = 2.584e-57
Identity = 103/196 (52.55%), Postives = 142/196 (72.45%), Query Frame = 1
Query:    7 HTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKVPSLPTGMGIVCASPKALE--ASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPPHINSSEIVRRAWQR 588
            H IKA+ + HNETATGV+++++ VRK LD  +HPAL +VDGVSS+ ++D RM EWG+D  ++GSQK   LPTG+GI+  S KAL+   SK  +  R FF ++D IK  + G F+PYTP+ QLL GLR +LDL+F EGL+NV  RH RL    R AV+AWGLK C ++ +W+SDTV+A++VP  I+S+ I + A+ R
Sbjct:  131 HEIKAVFVTHNETATGVSSDVAGVRKALDAAKHPALLMVDGVSSVGSLDMRMGEWGVDCCVSGSQKGFMLPTGLGILAVSQKALDINKSKNGRMNRCFFSFEDMIKTNDQG-FFPYTPATQLLRGLRTSLDLLFAEGLDNVFARHTRLASGVRAAVDAWGLKLCAKEPKWYSDTVSAILVPEGIDSNAITKTAYYR 325          

HSP 2 Score: 35.4242 bits (80), Expect = 2.584e-57
Identity = 16/24 (66.67%), Postives = 20/24 (83.33%), Query Frame = 3
Query:  618 QVAGKVFRIGHLGHLNELQLLGCL 689
            +VAGKVFRIGHLG L+E+ + G L
Sbjct:  336 KVAGKVFRIGHLGMLDEVMIGGAL 359          
BLAST of FC923462 vs. ExPASy Swiss-Prot
Match: Y959_METJA (Uncharacterized aminotransferase MJ0959 OS=Methanocaldococcus jannaschii GN=MJ0959 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.802e-33
Identity = 76/185 (41.08%), Postives = 109/185 (58.92%), Query Frame = 1
Query:   13 IKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKVPSLPTGMGIVCASPKALEA-SKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPPHINSSE 564
            IKA+ +VHNET+TG  N + ++ +++ +Y   AL++VD VSS+      +D++ ID+ +TGSQK  + P G+  +  S KA E   K    V  + D   Y K+Y      PYTPS+ L Y L  ALDL+ EEG+EN ++RH RL KATR  +EA G++    KE   S TVT+   P  I  S+
Sbjct:  133 IKAVTVVHNETSTGARNPIKEIGEVVKDY--DALYIVDTVSSLGGDYVNVDKFHIDICVTGSQKCLAAPPGLAAITVSEKAWEVIKKNDDKVGFYLDLLAYKKYYEEKKQTPYTPSVNLTYALNVALDLVLEEGIENRVKRHERLAKATRAGLEAMGIE-LFAKERARSVTVTSAKYPEGIEDSK 314          

HSP 2 Score: 31.5722 bits (70), Expect = 2.802e-33
Identity = 14/28 (50.00%), Postives = 19/28 (67.86%), Query Frame = 3
Query:  609 GP*QVAGKVFRIGHLGHLNELQLLGCLA 692
            G   +AGK+FRIGH+G   E ++L  LA
Sbjct:  330 GQKHLAGKIFRIGHMGICGEKEVLATLA 357          
BLAST of FC923462 vs. ExPASy Swiss-Prot
Match: DHSS_ANACY (Soluble hydrogenase 42 kDa subunit OS=Anabaena cylindrica PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 3.765e-29
Identity = 72/181 (39.78%), Postives = 102/181 (56.35%), Query Frame = 1
Query:    1 TAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKVPSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVP 543
            T   IKA+ I H+ET+TGV N+L  +   + E+   AL +VD V+S+ A +  +D  G+DV  +GSQK   +P G+G V  SPKA EA KTAK  + + D   Y K     T  P+TP + L+  L   L ++ +EGLE++  RH R   ATR A++A  L      +E  S  +TAV  P
Sbjct:  128 TNKEIKAVIITHSETSTGVINDLVAINSHVKEHGQ-ALIIVDAVTSLGAYNVPVDALGLDVVASGSQKGYMIPPGLGFVSVSPKAWEAYKTAKLPKYYLDLGKYRKATAKNT-TPFTPPVNLMVALHTTLGMMKKEGLESIFTRHERQKNATRAAMKALNLP-LFAADECASPAITAVATP 305          

HSP 2 Score: 33.113 bits (74), Expect = 3.765e-29
Identity = 12/31 (38.71%), Postives = 21/31 (67.74%), Query Frame = 3
Query:  600 LRSGP*QVAGKVFRIGHLGHLNELQLLGCLA 692
            L  G   ++ K+FR+GHLG +++  +L C+A
Sbjct:  324 LAGGQDHLSNKIFRVGHLGFVSDRDILSCIA 354          
BLAST of FC923462 vs. ExPASy Swiss-Prot
Match: DHSS_SYNP1 (Soluble hydrogenase, small subunit OS=Synechococcus sp. (strain PCC 6716) PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.856e-28
Identity = 64/156 (41.03%), Postives = 97/156 (62.18%), Query Frame = 1
Query:   16 KAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKVPSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGL 483
            KA+ + H+ET+TGV N+L  + + +  +   AL +VD V+S+ A+   +DEWG+DV  +GSQK   +P G+  V  SPKA EA KTA   + + D   Y K     T  P+TP + L + L+ AL+++  EGLE + +RH+RL +ATR A++A  L
Sbjct:  133 KAVIVTHSETSTGVINDLEAINRHVKAHGQ-ALIIVDAVTSLGAVSVPIDEWGLDVVGSGSQKGYMIPPGLAFVSVSPKAWEAYKTATLPKFYLDLGKYRKDAAKHT-TPFTPPVNLFFALKTALEMMQAEGLEAIFQRHQRLMQATRAAMKALNL 286          

HSP 2 Score: 28.1054 bits (61), Expect = 6.856e-28
Identity = 11/31 (35.48%), Postives = 19/31 (61.29%), Query Frame = 3
Query:  600 LRSGP*QVAGKVFRIGHLGHLNELQLLGCLA 692
            L  G   + G++FRIGHLG + +  +L  ++
Sbjct:  324 LAGGQDHLKGQIFRIGHLGFVGDRDILAAVS 354          
BLAST of FC923462 vs. ExPASy Swiss-Prot
Match: SPYA_RAT (Serine--pyruvate aminotransferase, mitochondrial OS=Rattus norvegicus GN=Agxt PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.110e-15
Identity = 63/197 (31.98%), Postives = 91/197 (46.19%), Query Frame = 1
Query:    7 HTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKVPSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFW---------PYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPPHINSSEIV 570
            H    + + H E++TGV   L    +L   +R+  L LVD V+S+  +   MD+ GID+  +GSQKV + P G+ ++  + KA     + K+  V F    Y     L   W          +T  +  LY LR +L LI E+GLEN   RHR         +   GLK   +  E    T+T V VP   N  +IV
Sbjct:  168 HKPVLLFLTHGESSTGVLQPLDGFGELC--HRYQCLLLVDSVASLGGVPIYMDQQGIDILYSGSQKVLNAPPGISLISFNDKAKSKVYSRKTKPVSF----YTDITYLSKLWGCEGKTRVIHHTLPVISLYCLRESLALISEQGLENSWRRHREATAHLHKCLRELGLKFFVKDPEIRLPTITTVTVPAGYNWRDIV 358          
BLAST of FC923462 vs. ExPASy Swiss-Prot
Match: PUCG_BACSU (Purine catabolism protein pucG OS=Bacillus subtilis GN=pucG PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.244e-15
Identity = 60/204 (29.41%), Postives = 96/204 (47.06%), Query Frame = 1
Query:   16 KAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKVPSLPTGMG----------IVCASPK-----ALEASKTAKS-----VRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPPHINSSEI 567
            K + +VH ET+TG  + L  + +        ALF+VD V++I   + ++DEW ID A+ G+QK  S+P+GM           ++ A  K     A +A + A S        +FD      +++      +T +  +LY LR  + L+ EEGLE   ERHR    A    ++A GL+     +      VT V +P  I+   +
Sbjct:  138 KIVAMVHGETSTGRIHPLKAIGEACRT--EDALFIVDAVATIGGCEVKVDEWKIDAAIGGTQKCLSVPSGMAPITYNERVADVIAARKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAALAAGIKAMGLR-LFGDDSCKMPVVTCVEIPGGIDGESV 338          

HSP 2 Score: 21.557 bits (44), Expect = 4.244e-15
Identity = 9/27 (33.33%), Postives = 18/27 (66.67%), Query Frame = 3
Query:  579 MAEIQSKLRSGP*QVAGKVFRIGHLGH 659
            +A+   ++ S    +AGK++RIG +G+
Sbjct:  343 LAQFGIEIASSFGPLAGKIWRIGTMGY 369          
BLAST of FC923462 vs. ExPASy Swiss-Prot
Match: SPYA_FELCA (Serine--pyruvate aminotransferase, mitochondrial OS=Felis catus GN=AGXT PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.198e-15
Identity = 62/197 (31.47%), Postives = 91/197 (46.19%), Query Frame = 1
Query:    7 HTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKVPSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFW---------PYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPPHINSSEIV 570
            H    + +   E+++GV   L    +L   +R+  L LVD V+S+C     MD+ GIDV  +GSQKV + P G  ++  S KA     T K+  V F    Y+    L   W          +T  +  LY LR +L LI E+GLEN   +HR +       ++  GL+   +       TVT V VP   +  +IV
Sbjct:  168 HKPVLLFLTQGESSSGVLQPLDGYGELC--HRYNCLLLVDSVASLCGTPIYMDQQGIDVLYSGSQKVLNSPPGTSLISFSDKAKNKIYTRKTKPVSF----YLDMKWLANIWGCDGKPRIYHHTTPVVSLYSLRESLALIAEQGLENSWRQHREVTAYLHGRLQGLGLQLFVKDPALRLPTVTTVAVPAGYDWRDIV 358          
BLAST of FC923462 vs. ExPASy Swiss-Prot
Match: SGAT_MAIZE (Serine--glyoxylate aminotransferase (Fragments) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.400e-15
Identity = 56/143 (39.16%), Postives = 64/143 (44.76%), Query Frame = 1
Query:   67 LSKVRKLLDEYRHPA--LFLVDGVSSICAIDFRMDEWGIDVALTGSQKVPSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKN 489
            L  V+K L     P   L LVD           MDEWG+DVALTGSQK  S PTGMG+VCASP            RVFFDWKDY++     T+W Y  ++ L                               LAVEAWGL N
Sbjct:   25 LEDVKKALTNTLSPGDRLLLVD-----------MDEWGVDVALTGSQKALSFPTGMGLVCASP------------RVFFDWKDYLR-----TYWHYDQALDL------------------------------ELAVEAWGLSN 109          
The following BLAST results are available for this feature:
BLAST of FC923462 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
SGAT_ARATH7.514e-10585.57Serine--glyoxylate aminotransferase OS=Arabidopsis... [more]
SGAA_METEA1.082e-6152.76Serine--glyoxylate aminotransferase OS=Methylobact... [more]
SGAA_HYPME2.584e-5752.55Serine--glyoxylate aminotransferase OS=Hyphomicrob... [more]
Y959_METJA2.802e-3341.08Uncharacterized aminotransferase MJ0959 OS=Methano... [more]
DHSS_ANACY3.765e-2939.78Soluble hydrogenase 42 kDa subunit OS=Anabaena cyl... [more]
DHSS_SYNP16.856e-2841.03Soluble hydrogenase, small subunit OS=Synechococcu... [more]
SPYA_RAT1.110e-1531.98Serine--pyruvate aminotransferase, mitochondrial O... [more]
PUCG_BACSU4.244e-1529.41Purine catabolism protein pucG OS=Bacillus subtili... [more]
SPYA_FELCA7.198e-1531.47Serine--pyruvate aminotransferase, mitochondrial O... [more]
SGAT_MAIZE9.400e-1539.16Serine--glyoxylate aminotransferase (Fragments) OS... [more]

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Properties
Property NameValue
Genbank descriptionC31705C11EF StrClemenN Citrus clementina cDNA clone C31705C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923462 ID=FC923462; Name=FC923462; organism=Citrus clementina; type=EST; length=692bp
ACTGCACACACTATCAAGGCCATTTGCATTGTTCATAACGAGACAGCGAC
CGGAGTTACCAACAACTTGTCTAAAGTGAGAAAACTTCTTGATGAATACA
GGCACCCGGCTCTTTTTCTCGTTGACGGGGTTTCCTCCATTTGTGCCATC
GATTTCCGTATGGATGAATGGGGCATAGATGTGGCTCTAACTGGCTCTCA
GAAAGTTCCTTCACTTCCTACTGGAATGGGGATTGTTTGTGCAAGCCCCA
AAGCTCTAGAGGCATCCAAAACTGCAAAATCTGTCAGAGTTTTCTTTGAT
TGGAAAGACTACATAAAGTTTTACAATTTGGGAACATTTTGGCCATATAC
CCCTTCCATCCAACTGCTGTATGGGCTGCGAGCAGCTTTGGATCTGATTT
TTGAGGAAGGGCTTGAAAATGTGATCGAAAGGCACCGTCGTTTGGGCAAA
GCAACCAGGCTTGCGGTGGAGGCATGGGGATTAAAGAACTGCACCCAGAA
AGAAGAATGGTTCAGTGACACCGTGACTGCTGTGATTGTTCCTCCACATA
TCAATAGTTCAGAAATTGTTAGAAGGGCATGGCAGAGATACAATCTAAGC
TTAGGTCTGGGCCTTAACAAGTTGCTGGTAAAGTATTTAGAATCGGGCAT
CTCGGCCACCTGAATGAGTTGCAATTGTTGGGCTGTCTCGCT
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