FC923468

Overview
NameFC923468
Unique NameFC923468
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13737 contig Ccv1_Contig13737:16..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC923468 vs. ExPASy Swiss-Prot
Match: MUG70_SCHPO (Meiotically up-regulated gene 70 protein OS=Schizosaccharomyces pombe GN=mug70 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.342e-16
Identity = 44/106 (41.51%), Postives = 69/106 (65.09%), Query Frame = 2 
Query:  353 TVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENG 670
            TV    L  ALT+   ++V++  + MA++R + VL+ D +  L+GIVT  DI TR +  GL   QT+++ IM+ +P+ +TSD+   +AL  M++ KFRHLPVV +G
Sbjct:   64 TVDSAALDPALTVHMQSLVTETAQLMAAKRQNCVLVVDDDEQLAGIVTATDIATRCVGAGLNARQTLIADIMSTSPLCITSDTRFDDALLLMIEHKFRHLPVVSDG 169
The following BLAST results are available for this feature:
BLAST of FC923468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
MUG70_SCHPO2.342e-1641.51Meiotically up-regulated gene 70 protein OS=Schizo... [more]
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Properties
Property NameValue
Genbank descriptionC31705D06EF StrClemenN Citrus clementina cDNA clone C31705D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923468 ID=FC923468; Name=FC923468; organism=Citrus clementina; type=EST; length=714bp
GGTGGTGGGAAAAGAGGGATTTGATTCTTTCATTCCCACGCCCGAGACCG
AGAGGAGGCCTCAAGCGTTATCCGCCAAAAAAAGAGGCTAAATAAACCCT
AACCCCTCCAGGCCTCTAGAGAAAACCAAATCATCAAAATCATTTTTCTT
CTTCTAGGTTTTCTTTCTTTTGTTGAAATAATTAAAAAAAAAAGAGAAAA
TGAGTAGTCAAGGGGGTAGTCGAAGGAGCCAGAAGAGAGCGCCATCCACG
TCCAAAAGGACGTCGTCGTCCGAAAATGGAGGAAATCTGTCGAAGCCTCC
TTCTCCACAGGGCGAATCGTCGTCGTCTGTTGGCGGGGCCGGCGGGGAGA
GGACGGTGAAGAAGTTGAGGCTGTCGAAAGCTCTCACAATTCCGGAGGGA
ACAATTGTGTCGGATGCTTGCAGGAGAATGGCATCTCGTCGTGTGGATGC
GGTTTTGTTGACTGATGCTAATGCTTTGCTCTCTGGTATTGTCACGGACA
AGGATATTACCACCAGGGTTATAGCCGAAGGTTTGAGACCTGATCAGACA
GTCGTTTCTAAGATCATGACCCGCAATCCTATCTTTGTCACTTCTGATTC
TTTGGCCATTGAAGCGCTTCAGAAGATGGTACAAGGAAAGTTCAGGCATC
TCCCTGTTGTAGAGAATGGTGAAGTTATTGCCATTTTGGATATCACAAGT
GCCTTTATGATGCC
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