FC923490

Overview
NameFC923490
Unique NameFC923490
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length394
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14479 contig Ccv1_Contig14479:1..394. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ARP2_ORYSJ (Actin-related protein 2 OS=Oryza sativa subsp. japonica GN=ARP2 PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 7.129e-38
Identity = 71/84 (84.52%), Postives = 76/84 (90.48%), Query Frame = 1
Query:  142 MDNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDMG 393
            MD+ NVVVCDNGTGYVKCGFAGENFP SVFPCVVGRP+LRYEESL EQEL D +VGAA  DLRHQLDVSYPV NGIVQ+W+DMG
Sbjct:    1 MDSGNVVVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLQEQELTDIVVGAACADLRHQLDVSYPVTNGIVQSWDDMG 84          
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ARP2_ORYSI (Actin-related protein 2 OS=Oryza sativa subsp. indica GN=ARP2 PE=2 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 7.129e-38
Identity = 71/84 (84.52%), Postives = 76/84 (90.48%), Query Frame = 1
Query:  142 MDNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDMG 393
            MD+ NVVVCDNGTGYVKCGFAGENFP SVFPCVVGRP+LRYEESL EQEL D +VGAA  DLRHQLDVSYPV NGIVQ+W+DMG
Sbjct:    1 MDSGNVVVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLQEQELTDIVVGAACADLRHQLDVSYPVTNGIVQSWDDMG 84          
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ARP2_ARATH (Actin-related protein 2 OS=Arabidopsis thaliana GN=ARP2 PE=1 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.074e-37
Identity = 67/83 (80.72%), Postives = 77/83 (92.77%), Query Frame = 1
Query:  142 MDNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            MDN+NVVVCDNGTGYVKCGFAGENFP SVFPCVVGRP+LRYEESLMEQ++KD +VG    +LRHQLD++YPV+NGIVQNW+DM
Sbjct:    1 MDNKNVVVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLMEQQVKDIVVGETCSELRHQLDINYPVHNGIVQNWDDM 83          
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ARP2_DROME (Actin-related protein 2 OS=Drosophila melanogaster GN=Arp14D PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 4.486e-24
Identity = 47/80 (58.75%), Postives = 62/80 (77.50%), Query Frame = 1
Query:  151 RNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            RNV+VCDNGTG+VKCG+AG NFP  +FP +VGRPM+R    + + E+KD +VG  A  LR  L+VSYP+ NG+V+NW+DM
Sbjct:    6 RNVIVCDNGTGFVKCGYAGSNFPTHIFPSMVGRPMIRAVNKIGDIEVKDLMVGDEASQLRSLLEVSYPMENGVVRNWDDM 85          
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ARP2_DICDI (Actin-related protein 2 OS=Dictyostelium discoideum GN=arpB PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 9.995e-24
Identity = 46/83 (55.42%), Postives = 63/83 (75.90%), Query Frame = 1
Query:  142 MDNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            MD+  V+V DNGTG+VKCGFAG NFP ++FP +VGRP+LR EE +   E+KD +VG  A  LR  L ++YP+ NGI++NW+D+
Sbjct:    1 MDSNKVIVMDNGTGFVKCGFAGANFPTAIFPSMVGRPILRSEEKVENVEIKDIMVGDEAAKLRSMLQITYPLENGIIRNWDDI 83          
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ARP2_ACACA (Actin-related protein 2 OS=Acanthamoeba castellanii GN=arp2 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.305e-23
Identity = 48/81 (59.26%), Postives = 61/81 (75.31%), Query Frame = 1
Query:  145 DNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWED 387
            D+  V+VCDNGTG+VKCGFA  NFP S+FP +VGRP+LR EE     E+KD +VG  A  LR  L ++YP++NGIV+NWED
Sbjct:    3 DSSKVIVCDNGTGFVKCGFARSNFPASIFPSMVGRPILRSEEKFDNVEIKDIMVGDEASKLRSMLQITYPLDNGIVRNWED 83          
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ARP2_XENTR (Actin-related protein 2 OS=Xenopus tropicalis GN=actr2 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.798e-23
Identity = 46/80 (57.50%), Postives = 61/80 (76.25%), Query Frame = 1
Query:  151 RNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            R VVVCDNGTG+VKCG+AG NFP  +FP +VGRP++R    +   E+KD +VG  A +LR  L+V+YP+ NGIV+NW+DM
Sbjct:    6 RKVVVCDNGTGFVKCGYAGSNFPEHIFPALVGRPVIRSTAKVGNIEIKDLMVGDEASELRSMLEVNYPMENGIVRNWDDM 85          
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ARP2_RAT (Actin-related protein 2 OS=Rattus norvegicus GN=Actr2 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.798e-23
Identity = 46/80 (57.50%), Postives = 61/80 (76.25%), Query Frame = 1
Query:  151 RNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            R VVVCDNGTG+VKCG+AG NFP  +FP +VGRP++R    +   E+KD +VG  A +LR  L+V+YP+ NGIV+NW+DM
Sbjct:    6 RKVVVCDNGTGFVKCGYAGSNFPEHIFPALVGRPIIRSTTKVGNIEIKDLMVGDEASELRSMLEVNYPMENGIVRNWDDM 85          
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ARP2_PONAB (Actin-related protein 2 OS=Pongo abelii GN=ACTR2 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.798e-23
Identity = 46/80 (57.50%), Postives = 61/80 (76.25%), Query Frame = 1
Query:  151 RNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            R VVVCDNGTG+VKCG+AG NFP  +FP +VGRP++R    +   E+KD +VG  A +LR  L+V+YP+ NGIV+NW+DM
Sbjct:    6 RKVVVCDNGTGFVKCGYAGSNFPEHIFPALVGRPIIRSTTKVGNIEIKDLMVGDEASELRSMLEVNYPMENGIVRNWDDM 85          
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ARP2_MOUSE (Actin-related protein 2 OS=Mus musculus GN=Actr2 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.798e-23
Identity = 46/80 (57.50%), Postives = 61/80 (76.25%), Query Frame = 1
Query:  151 RNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            R VVVCDNGTG+VKCG+AG NFP  +FP +VGRP++R    +   E+KD +VG  A +LR  L+V+YP+ NGIV+NW+DM
Sbjct:    6 RKVVVCDNGTGFVKCGYAGSNFPEHIFPALVGRPIIRSTTKVGNIEIKDLMVGDEASELRSMLEVNYPMENGIVRNWDDM 85          
The following BLAST results are available for this feature:
BLAST of FC923490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 323
Match NameE-valueIdentityDescription
ARP2_ORYSJ7.129e-3884.52Actin-related protein 2 OS=Oryza sativa subsp. jap... [more]
ARP2_ORYSI7.129e-3884.52Actin-related protein 2 OS=Oryza sativa subsp. ind... [more]
ARP2_ARATH2.074e-3780.72Actin-related protein 2 OS=Arabidopsis thaliana GN... [more]
ARP2_DROME4.486e-2458.75Actin-related protein 2 OS=Drosophila melanogaster... [more]
ARP2_DICDI9.995e-2455.42Actin-related protein 2 OS=Dictyostelium discoideu... [more]
ARP2_ACACA1.305e-2359.26Actin-related protein 2 OS=Acanthamoeba castellani... [more]
ARP2_XENTR3.798e-2357.50Actin-related protein 2 OS=Xenopus tropicalis GN=a... [more]
ARP2_RAT3.798e-2357.50Actin-related protein 2 OS=Rattus norvegicus GN=Ac... [more]
ARP2_PONAB3.798e-2357.50Actin-related protein 2 OS=Pongo abelii GN=ACTR2 P... [more]
ARP2_MOUSE3.798e-2357.50Actin-related protein 2 OS=Mus musculus GN=Actr2 P... [more]

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Properties
Property NameValue
Genbank descriptionC31705F04EF StrClemenN Citrus clementina cDNA clone C31705F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923490 ID=FC923490; Name=FC923490; organism=Citrus clementina; type=EST; length=394bp
GATATTTCGCGTAGCGTAACGAATACTTTGCTGCATTTAGAAGCTCCTCC
GGTTGAAGGAAAGCGGTTAGATGAAGAAAGCAGCTACTAATCAGCAACAC
TCCCACTTACTCCTCCGCTTGGGCAACAGCATCACCGTGTAATGGACAAC
AGAAACGTCGTCGTTTGCGACAATGGCACTGGGTATGTCAAGTGCGGATT
CGCAGGGGAAAATTTTCCTAACTCTGTGTTCCCATGTGTTGTGGGAAGGC
CAATGCTACGCTACGAAGAATCACTCATGGAACAAGAGCTCAAGGATACT
ATTGTTGGAGCTGCAGCTTTAGACTTGCGGCATCAACTGGATGTATCTTA
TCCTGTTAATAATGGTATAGTGCAAAACTGGGAGGATATGGGTC
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