FC923492

Overview
NameFC923492
Unique NameFC923492
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length416
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2675 contig Ccv1_Contig2675:216..631. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923492 vs. ExPASy Swiss-Prot
Match: UBA3_ARATH (NEDD8-activating enzyme E1 catalytic subunit OS=Arabidopsis thaliana GN=ECR1 PE=1 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 2.549e-35
Identity = 72/86 (83.72%), Postives = 79/86 (91.86%), Query Frame = 1
Query:  157 GNLVGPTFEPGAELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAXRVME 414
            GNLV P F PG  LRDD+++Y RILV+GAGGLGCELLKDLALSGF+NLEVIDMDRIEV+NLNRQFLFR+EDVGKPKAEVAA RVME
Sbjct:   26 GNLVDPGFVPGPGLRDDIRDYVRILVIGAGGLGCELLKDLALSGFRNLEVIDMDRIEVTNLNRQFLFRIEDVGKPKAEVAAKRVME 111          
BLAST of FC923492 vs. ExPASy Swiss-Prot
Match: UBA3_RAT (NEDD8-activating enzyme E1 catalytic subunit OS=Rattus norvegicus GN=Uba3 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.005e-23
Identity = 53/82 (64.63%), Postives = 64/82 (78.05%), Query Frame = 1
Query:  154 AGNLVGPTFEPGAELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAA 399
            +G    P FEP  E    L +  ++LV+GAGGLGCELLK+LALSGF+ + VIDMD I+VSNLNRQFLFR +DVG+PKAEVAA
Sbjct:   48 SGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDVGRPKAEVAA 129          
BLAST of FC923492 vs. ExPASy Swiss-Prot
Match: UBA3_MOUSE (NEDD8-activating enzyme E1 catalytic subunit OS=Mus musculus GN=Uba3 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.005e-23
Identity = 53/82 (64.63%), Postives = 64/82 (78.05%), Query Frame = 1
Query:  154 AGNLVGPTFEPGAELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAA 399
            +G    P FEP  E    L +  ++LV+GAGGLGCELLK+LALSGF+ + VIDMD I+VSNLNRQFLFR +DVG+PKAEVAA
Sbjct:   48 SGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDVGRPKAEVAA 129          
BLAST of FC923492 vs. ExPASy Swiss-Prot
Match: UBA3_PONAB (NEDD8-activating enzyme E1 catalytic subunit OS=Pongo abelii GN=UBA3 PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 1.312e-23
Identity = 52/82 (63.41%), Postives = 64/82 (78.05%), Query Frame = 1
Query:  154 AGNLVGPTFEPGAELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAA 399
            +G    P FEP  E    L +  ++LV+GAGGLGCELLK+LALSGF+ + VIDMD I+VSNLNRQFLFR +D+G+PKAEVAA
Sbjct:   48 SGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAA 129          
BLAST of FC923492 vs. ExPASy Swiss-Prot
Match: UBA3_HUMAN (NEDD8-activating enzyme E1 catalytic subunit OS=Homo sapiens GN=UBA3 PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 1.312e-23
Identity = 52/82 (63.41%), Postives = 64/82 (78.05%), Query Frame = 1
Query:  154 AGNLVGPTFEPGAELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAA 399
            +G    P FEP  E    L +  ++LV+GAGGLGCELLK+LALSGF+ + VIDMD I+VSNLNRQFLFR +D+G+PKAEVAA
Sbjct:   48 SGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAA 129          
BLAST of FC923492 vs. ExPASy Swiss-Prot
Match: UBA3_DANRE (NEDD8-activating enzyme E1 catalytic subunit OS=Danio rerio GN=uba3 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.238e-23
Identity = 53/81 (65.43%), Postives = 63/81 (77.78%), Query Frame = 1
Query:  157 GNLVGPTFEPGAELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAA 399
            G    P FE   E    L +  +ILV+GAGGLGCELLKDLALSGF+++ V+DMD I+VSNLNRQFLFR +DVG+PKAEVAA
Sbjct:   48 GPFTHPDFEASTESLQFLLDTCKILVIGAGGLGCELLKDLALSGFRHIHVVDMDTIDVSNLNRQFLFRPKDVGRPKAEVAA 128          
BLAST of FC923492 vs. ExPASy Swiss-Prot
Match: UBA3_DICDI (NEDD8-activating enzyme E1 catalytic subunit OS=Dictyostelium discoideum GN=uba3 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.986e-23
Identity = 52/85 (61.18%), Postives = 67/85 (78.82%), Query Frame = 1
Query:  157 GNLVGPTFEPGAE----LRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAA 399
            G    P+FEP  +    + + LQ   ++LV+GAGGLGCE+LK+LALSGF+N++VIDMD I++SNLNRQFLFR +DVGK KAEVAA
Sbjct:   25 GPFASPSFEPDTKASPNIMNGLQNDFKVLVIGAGGLGCEILKNLALSGFRNIDVIDMDTIDISNLNRQFLFRRKDVGKSKAEVAA 109          
BLAST of FC923492 vs. ExPASy Swiss-Prot
Match: UBA3_CAEEL (NEDD8-activating enzyme E1 catalytic subunit OS=Caenorhabditis elegans GN=uba-3 PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 8.505e-23
Identity = 56/81 (69.14%), Postives = 64/81 (79.01%), Query Frame = 1
Query:  172 PTFEPGAELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAXRVME 414
            P F PG E  + LQ   +ILV+GAGGLGCELLK+LALSGF+ +EVIDMD I+VSNLNRQFLFR  DVGK KAEVAA  V +
Sbjct:   28 PWFVPGPENFEALQN-TKILVIGAGGLGCELLKNLALSGFRTIEVIDMDTIDVSNLNRQFLFRESDVGKSKAEVAAAFVQQ 107          
BLAST of FC923492 vs. ExPASy Swiss-Prot
Match: UBA3_DROME (NEDD8-activating enzyme E1 catalytic subunit OS=Drosophila melanogaster GN=CG13343 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.739e-20
Identity = 48/74 (64.86%), Postives = 56/74 (75.68%), Query Frame = 1
Query:  178 FEPGAELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAA 399
            F   +E  + LQ   ++L++GAGGLGCELLKDLAL GF NL VIDMD IE+SNLNRQFLFR  D+G  KAE AA
Sbjct:   35 FAASSENLEFLQTKCQVLIIGAGGLGCELLKDLALMGFGNLHVIDMDTIELSNLNRQFLFRRTDIGASKAECAA 108          
BLAST of FC923492 vs. ExPASy Swiss-Prot
Match: SAE2_DANRE (SUMO-activating enzyme subunit 2 OS=Danio rerio GN=uba2 PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 6.739e-20
Identity = 51/83 (61.45%), Postives = 64/83 (77.11%), Query Frame = 1
Query:  163 LVGPTFEPGAELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAXRVM 411
            LVGP  +   +L D L    R+LVVGAGG+GCELLK+L L+GFKN+EVID+D I+VSNLNRQFLF+ + VGK KA+VA   V+
Sbjct:    4 LVGPLRK---QLADSLSS-CRVLVVGAGGIGCELLKNLVLTGFKNIEVIDLDTIDVSNLNRQFLFQKKHVGKSKAQVAKESVL 82          
The following BLAST results are available for this feature:
BLAST of FC923492 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
UBA3_ARATH2.549e-3583.72NEDD8-activating enzyme E1 catalytic subunit OS=Ar... [more]
UBA3_RAT1.005e-2364.63NEDD8-activating enzyme E1 catalytic subunit OS=Ra... [more]
UBA3_MOUSE1.005e-2364.63NEDD8-activating enzyme E1 catalytic subunit OS=Mu... [more]
UBA3_PONAB1.312e-2363.41NEDD8-activating enzyme E1 catalytic subunit OS=Po... [more]
UBA3_HUMAN1.312e-2363.41NEDD8-activating enzyme E1 catalytic subunit OS=Ho... [more]
UBA3_DANRE2.238e-2365.43NEDD8-activating enzyme E1 catalytic subunit OS=Da... [more]
UBA3_DICDI4.986e-2361.18NEDD8-activating enzyme E1 catalytic subunit OS=Di... [more]
UBA3_CAEEL8.505e-2369.14NEDD8-activating enzyme E1 catalytic subunit OS=Ca... [more]
UBA3_DROME6.739e-2064.86NEDD8-activating enzyme E1 catalytic subunit OS=Dr... [more]
SAE2_DANRE6.739e-2061.45SUMO-activating enzyme subunit 2 OS=Danio rerio GN... [more]

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Properties
Property NameValue
Genbank descriptionC31705F06EF StrClemenN Citrus clementina cDNA clone C31705F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923492 ID=FC923492; Name=FC923492; organism=Citrus clementina; type=EST; length=416bp
GACAGACCCAGCGTCAAAGCCAAGCTATCAGCATATTTTCGCAACGGCTA
AATCAGAACCAAATACAGTGATAGTAAGCGAGTGTGAGAATTGTTGCAAA
TGGCTGACACGGCACCGAGCCGATCCCGAGACCTAGACAAGCTCTTACTC
CGAGCCGGTAATCTCGTGGGCCCCACTTTCGAACCCGGCGCAGAATTGAG
AGATGACTTACAAGAATATGCGCGAATTTTGGTTGTTGGAGCCGGTGGAT
TGGGCTGCGAATTGTTGAAAGACTTAGCTTTATCGGGTTTTAAAAACCTA
GAGGTCATTGATATGGACCGTATCGAAGTTTCGAATCTCAATCGCCAGTT
TCTTTTCAGGATGGAAGATGTTGGTAAGCCAAAGGCAGAGGTGGCAGCAA
GNCGTGTCATGGAGAG
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