FC923496
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: SF3B4_RAT (Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2 SV=1) HSP 1 Score: 322.398 bits (825), Expect = 1.493e-87 Identity = 154/210 (73.33%), Postives = 177/210 (84.29%), Query Frame = 1 Query: 1 TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQANGTVGGPVPP 630 +E LLWELF+QAGPVVN ++PKDRVT HQGYGFVEF SEEDADYAIK++NMIKLYGKPIRVNKAS K+LDVGAN+FIGNLDP++DEKLLYDTFSAFGVI+ PKIMRDPDTGNS+G+ FI++ SF+ASDAAIEAMNGQYLCNR ITVSYA+KKD+KGERHG+ AER+LAA NP SQ RPH LFA PP ++G +PP Sbjct: 25 SEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSLGSGLPP 234
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: SF3B4_MOUSE (Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=2 SV=1) HSP 1 Score: 322.398 bits (825), Expect = 1.493e-87 Identity = 154/210 (73.33%), Postives = 177/210 (84.29%), Query Frame = 1 Query: 1 TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQANGTVGGPVPP 630 +E LLWELF+QAGPVVN ++PKDRVT HQGYGFVEF SEEDADYAIK++NMIKLYGKPIRVNKAS K+LDVGAN+FIGNLDP++DEKLLYDTFSAFGVI+ PKIMRDPDTGNS+G+ FI++ SF+ASDAAIEAMNGQYLCNR ITVSYA+KKD+KGERHG+ AER+LAA NP SQ RPH LFA PP ++G +PP Sbjct: 25 SEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSLGSGLPP 234
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: SF3B4_HUMAN (Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1) HSP 1 Score: 322.398 bits (825), Expect = 1.493e-87 Identity = 154/210 (73.33%), Postives = 177/210 (84.29%), Query Frame = 1 Query: 1 TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQANGTVGGPVPP 630 +E LLWELF+QAGPVVN ++PKDRVT HQGYGFVEF SEEDADYAIK++NMIKLYGKPIRVNKAS K+LDVGAN+FIGNLDP++DEKLLYDTFSAFGVI+ PKIMRDPDTGNS+G+ FI++ SF+ASDAAIEAMNGQYLCNR ITVSYA+KKD+KGERHG+ AER+LAA NP SQ RPH LFA PP ++G +PP Sbjct: 25 SEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSLGSGLPP 234
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: SF3B4_CAEEL (Splicing factor 3B subunit 4 OS=Caenorhabditis elegans GN=sap-49 PE=1 SV=2) HSP 1 Score: 293.893 bits (751), Expect = 5.687e-79 Identity = 148/231 (64.07%), Postives = 176/231 (76.19%), Query Frame = 1 Query: 1 TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAANNPSSQKSRPHTLFASGP-----------PSLQNAPQANGTVGGPVPPRPYANGAASG 660 +E +LWEL VQAGPVV+V +PKDRVT HQG+GFVEF EEDADYAIK+LNMIKLYGKPI+VNKAS +K++DVGAN+F+GNLDP+VDEKLLYDTFSAFGVI+ PKIMRD D+G S+GF FI++ SFEASD A+EAMNGQ+LCNR ITVSYA+K+D+KGERHGT AER+LAA NP K RPH +F+ P P + A A+ T P P A SG Sbjct: 25 SESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKASAHEKNMDVGANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSKGERHGTAAERMLAAQNPLFPKDRPHQVFSDVPLGVPANTPLAMPGVHAAIAAHATGRPGYQPPPLMGMAQSG 255
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: SAP49_SCHPO (Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe GN=sap49 PE=2 SV=2) HSP 1 Score: 229.18 bits (583), Expect = 1.720e-59 Identity = 120/239 (50.21%), Postives = 160/239 (66.95%), Query Frame = 1 Query: 1 TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDK-KSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAA-----------------------NNPSSQKSRPHTLFASGPPSLQNAPQANGTVGGPVPPRPYAN 645 T+ +L+EL +QAGPVVN+++P+DRV N H G+GF EF E+D +YA ++LN +KL+GKPIRVN+ASQD+ + +GANLF+GNLDP VDE++LYDTFSA G +V P++ RD + G S+G+GF+SYDSFE +DAAIEAMN Q+L N+ ITVSYA+K++ KGERHG AER LAA P+S + P T+ A+ P + N P T VPP N Sbjct: 23 TDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQILNQVKLFGKPIRVNRASQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARD-ENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFKREGKGERHGDIAERKLAAAAKKNKVAVTPQSTLPPGFSPATPAPTSAANTPATIAATSIPPVPNVPLVGATTA--VPPLSIPN 258
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: SF3B4_DICDI (Splicing factor 3B subunit 4 OS=Dictyostelium discoideum GN=sf3b4 PE=3 SV=1) HSP 1 Score: 218.009 bits (554), Expect = 3.966e-56 Identity = 110/215 (51.16%), Postives = 153/215 (71.16%), Query Frame = 1 Query: 1 TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAANNPS-----SQKSRPHTLFASGPPSLQNAPQANGTVGGPVPP 630 TE LL ELF+QA PVV V++PKD++T H G +VEF+S DA+YA+KV+ ++L+ K I++ K ++DK +D+GANLFIGNLD DVDE++L+DTFS FG I+ PK+MRD + G S+GF FI++DSFEASDAAIEAMN Q+LCN+ I+V+YA KKD+ ERHG+ AERI+AA+ + Q+ + + ++ S Q P+PP Sbjct: 25 TESLLMELFIQAAPVVKVFIPKDKLTQQHSGRAYVEFQSSSDAEYALKVMKFVRLFNKEIKIKKENKDK--VDIGANLFIGNLDADVDERILHDTFSRFGTIIFTPKVMRD-ENGVSKGFAFINFDSFEASDAAIEAMNSQFLCNKPISVTYARKKDS-NERHGSSAERIIAASRNTGYLNQQQQQQSSSTSSTSTISTSTPQQQQQQQSQPLPP 235
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: PABP_SCHPO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Schizosaccharomyces pombe GN=pab1 PE=1 SV=2) HSP 1 Score: 117.857 bits (294), Expect = 5.586e-26 Identity = 63/153 (41.18%), Postives = 99/153 (64.71%), Query Frame = 1 Query: 1 TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSY 456 TE +L+ELF GPV ++ V +D VT GY +V F + ED + A+ LN + G+P R+ + +D +G N+FI NLDP +D K L+DTFSAFG I+ + K+ D + GN++G+GF+ +DS E+++AAIE +NG L ++++ V + Sbjct: 92 TEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKIL-SCKVAVD-ELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGH 242 HSP 2 Score: 90.5077 bits (223), Expect = 9.550e-18 Identity = 74/241 (30.71%), Postives = 116/241 (48.13%), Query Frame = 1 Query: 1 TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQ-----------------DKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAANNPSSQKSRPHTLFASGPPSLQ---NAPQANGTVGGPVPPRPYANGAASGP 663 TE+ +LF Q G + ++ + KD+ + +G+GFV + + E A A+ LN + GK + V +A + +K + G NLFI NL +VD++ L FSAFG I T+ KIM D + G S+GFGF+ Y + E ++ A+ MN + L + + V+ A +K+ R +I A N Q+ A+G P++Q P G G P+P G P Sbjct: 273 TEQEFSDLFGQFGEITSLSLVKDQ-NDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTI-TSAKIMTD-EQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKEV---RRSQLEAQIQARNQFRLQQ---QVAAAAGIPAVQYGATGPLIYGPGGYPIPAAVNGRGMPMVP 504
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: PABP2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 5.586e-26 Identity = 69/151 (45.70%), Postives = 96/151 (63.58%), Query Frame = 1 Query: 1 TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV 450 T+ L++ F Q G VV V V +D VT GYG+V F + +DA AI+ LN I LYGKPIRV + +D GA N+FI NLD +D K L+DTFS+FG IV + K+ D +G S+G+GF+ Y + E++ AIE +NG L ++Q+ V Sbjct: 48 TDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIV-SCKVAVD-SSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYV 196 HSP 2 Score: 79.337 bits (194), Expect = 2.202e-14 Identity = 63/230 (27.39%), Postives = 111/230 (48.26%), Query Frame = 1 Query: 1 TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI---RVNKASQDKKSLDV--------------GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERIL-AANNPSSQKSRPHTLFASGPPSLQNAPQANGTVGGPVPPRP 636 T++ L F + G + + V KD +G+GFV F + +DA A++ LN K K R K S+ + L V +NL++ NLDP + ++ L + FS FG VT+ K+MRDP+ G S+G GF+++ + E + A+ ++G+ + ++ + V+ A +K+ + R ++ A PS P ++ G P + +PP+P Sbjct: 227 TDDDLKNAFGEYGKITSAVVMKDG-EGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGT-VTSSKVMRDPN-GTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQFSQVRPVAMQPSVGPRMP--VYPPGGPGIGQQMFYGQAPPAMIPPQP 451
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: HSH49_YEAST (Protein HSH49 OS=Saccharomyces cerevisiae GN=HSH49 PE=1 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 3.621e-25 Identity = 62/184 (33.70%), Postives = 107/184 (58.15%), Query Frame = 1 Query: 1 TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVL-NMIKLYGKPIRVNKASQDKKSLDVGAN-----------LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE-RHGTPAERIL 513 T+E L+ELF+Q PV+ + PKD+V +QGY F+EF ++ DA YAIK++ N ++LY + I+V + + + ++ +N LFI NL +D L F+ FG ++ P+I + ++ ++ FE +D AI+++N Q + N +ITV YA+K++ KG ++G +R+L Sbjct: 21 TKEQLYELFIQINPVLRIKYPKDKVLQAYQGYAFIEFYNQGDAQYAIKIMNNTVRLYDRLIKVRQVTNSTGTTNLPSNISKDMILPIAKLFIKNLADSIDSDQLVKIFNKFGKLIREPEIFY--LSNGKLKCAYVYFEDFEKADLAIKSLNNQLVANNRITVDYAFKENGKGNAKYGDDVDRLL 202
BLAST of FC923496 vs. ExPASy Swiss-Prot
Match: PABP1_RAT (Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 4.729e-25 Identity = 61/163 (37.42%), Postives = 99/163 (60.74%), Query Frame = 1 Query: 1 TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKGE 483 TE +L+E F AGP++++ V +D +T GY +V F+ DA+ A+ +N + GKP+R+ + +D G N+FI NLD +D K LYDTFSAFG I++ + D S+G+GF+ +++ EA++ AIE MNG L +R++ V + +K+ + E Sbjct: 23 TEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC---DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182 HSP 2 Score: 91.6633 bits (226), Expect = 4.287e-18 Identity = 68/219 (31.05%), Postives = 107/219 (48.86%), Query Frame = 1 Query: 4 EELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK----GERHGTPAERILAANNP---SSQKSRPHTLFASGPPSLQN 588 +E L ELF + GP ++V V D + +G+GFV F EDA A+ +N +L GK I V +A QD+ + G NL++ NLD +D++ L FS FG I T+ K+M + G S+GFGF+ + S E + A+ MNG+ + + + V+ A +K+ + ++ + A NP Q + P F + P QN Sbjct: 204 DERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTI-TSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQN 418 HSP 3 Score: 82.8037 bits (203), Expect = 1.991e-15 Identity = 53/159 (33.33%), Postives = 93/159 (58.49%), Query Frame = 1 Query: 13 LWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 468 L++ F G +++ V D N +GYGFV F ++E A+ AI+ +N + L + + V + S+ ++ ++GA N++I N D+D++ L + F FG ++ K+M D ++G S+GFGF+S++ E + A++ MNG+ L +QI V A KK Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALS-VKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269 The following BLAST results are available for this feature:
BLAST of FC923496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 127
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC923496 ID=FC923496; Name=FC923496; organism=Citrus clementina; type=EST; length=709bpback to top |