FC923498

Overview
NameFC923498
Unique NameFC923498
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length358
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC923498_ssr85 microsatellite FC923498_ssr85:85..96. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9871 contig Ccv1_Contig9871:3..360. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC923498 vs. ExPASy Swiss-Prot
Match: RS17_SOLLC (40S ribosomal protein S17 OS=Solanum lycopersicum GN=RPS17 PE=2 SV=3)

HSP 1 Score: 156.377 bits (394), Expect = 4.248e-38
Identity = 78/82 (95.12%), Postives = 82/82 (100.00%), Query Frame = 3 
Query:  111 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIKRGPVRGISLKLQEEERDRRM 356
            MGRVRTKTVKKSSRQVIERYYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRI++GPVRGISLKLQEEER+RRM
Sbjct:    1 MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRM 82
[Close]
BLAST of FC923498 vs. ExPASy Swiss-Prot
Match: RS174_ARATH (40S ribosomal protein S17-4 OS=Arabidopsis thaliana GN=RPS17D PE=2 SV=3)

HSP 1 Score: 156.377 bits (394), Expect = 4.248e-38
Identity = 78/82 (95.12%), Postives = 82/82 (100.00%), Query Frame = 3 
Query:  111 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIKRGPVRGISLKLQEEERDRRM 356
            MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRI++GPVRGISLKLQEEER+RRM
Sbjct:    1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRM 82
[Close]
BLAST of FC923498 vs. ExPASy Swiss-Prot
Match: RS173_ARATH (40S ribosomal protein S17-3 OS=Arabidopsis thaliana GN=RPS17C PE=2 SV=3)

HSP 1 Score: 156.377 bits (394), Expect = 4.248e-38
Identity = 78/82 (95.12%), Postives = 82/82 (100.00%), Query Frame = 3 
Query:  111 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIKRGPVRGISLKLQEEERDRRM 356
            MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRI++GPVRGISLKLQEEER+RRM
Sbjct:    1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRM 82
[Close]
BLAST of FC923498 vs. ExPASy Swiss-Prot
Match: RS172_ARATH (40S ribosomal protein S17-2 OS=Arabidopsis thaliana GN=RPS17B PE=2 SV=3)

HSP 1 Score: 156.377 bits (394), Expect = 4.248e-38
Identity = 78/82 (95.12%), Postives = 82/82 (100.00%), Query Frame = 3 
Query:  111 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIKRGPVRGISLKLQEEERDRRM 356
            MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRI++GPVRGISLKLQEEER+RRM
Sbjct:    1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRM 82
[Close]
BLAST of FC923498 vs. ExPASy Swiss-Prot
Match: RS171_ARATH (40S ribosomal protein S17-1 OS=Arabidopsis thaliana GN=RPS17A PE=1 SV=3)

HSP 1 Score: 156.377 bits (394), Expect = 4.248e-38
Identity = 78/82 (95.12%), Postives = 82/82 (100.00%), Query Frame = 3 
Query:  111 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIKRGPVRGISLKLQEEERDRRM 356
            MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRI++GPVRGISLKLQEEER+RRM
Sbjct:    1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRM 82
[Close]
BLAST of FC923498 vs. ExPASy Swiss-Prot
Match: RS17_BOVIN (40S ribosomal protein S17 OS=Bos taurus GN=RPS17 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.948e-31
Identity = 62/81 (76.54%), Postives = 76/81 (93.83%), Query Frame = 3 
Query:  111 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIKRGPVRGISLKLQEEERDRR 353
            MGRVRTKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKIAG+ THLMKRI+RGPVRGIS+KLQEEER+RR
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLDNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERR 81
[Close]
BLAST of FC923498 vs. ExPASy Swiss-Prot
Match: RS17_PIG (40S ribosomal protein S17 OS=Sus scrofa GN=RPS17 PE=2 SV=3)

HSP 1 Score: 133.265 bits (334), Expect = 3.851e-31
Identity = 62/81 (76.54%), Postives = 76/81 (93.83%), Query Frame = 3 
Query:  111 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIKRGPVRGISLKLQEEERDRR 353
            MGRVRTKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKIAG+ THLMKRI+RGPVRGIS+KLQEEER+RR
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERR 81
[Close]
BLAST of FC923498 vs. ExPASy Swiss-Prot
Match: RS17_MOUSE (40S ribosomal protein S17 OS=Mus musculus GN=Rps17 PE=1 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 3.851e-31
Identity = 62/81 (76.54%), Postives = 76/81 (93.83%), Query Frame = 3 
Query:  111 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIKRGPVRGISLKLQEEERDRR 353
            MGRVRTKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKIAG+ THLMKRI+RGPVRGIS+KLQEEER+RR
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERR 81
[Close]
BLAST of FC923498 vs. ExPASy Swiss-Prot
Match: RS17_ICTPU (40S ribosomal protein S17 OS=Ictalurus punctatus GN=rps17 PE=2 SV=3)

HSP 1 Score: 133.265 bits (334), Expect = 3.851e-31
Identity = 62/81 (76.54%), Postives = 76/81 (93.83%), Query Frame = 3 
Query:  111 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIKRGPVRGISLKLQEEERDRR 353
            MGRVRTKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKIAG+ THLMKRI+RGPVRGIS+KLQEEER+RR
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERR 81
[Close]
BLAST of FC923498 vs. ExPASy Swiss-Prot
Match: RS17_HUMAN (40S ribosomal protein S17 OS=Homo sapiens GN=RPS17 PE=1 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 3.851e-31
Identity = 62/81 (76.54%), Postives = 76/81 (93.83%), Query Frame = 3 
Query:  111 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIKRGPVRGISLKLQEEERDRR 353
            MGRVRTKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKIAG+ THLMKRI+RGPVRGIS+KLQEEER+RR
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERR 81
The following BLAST results are available for this feature:
BLAST of FC923498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RS17_SOLLC4.248e-3895.1240S ribosomal protein S17 OS=Solanum lycopersicum ... [more]
RS174_ARATH4.248e-3895.1240S ribosomal protein S17-4 OS=Arabidopsis thalian... [more]
RS173_ARATH4.248e-3895.1240S ribosomal protein S17-3 OS=Arabidopsis thalian... [more]
RS172_ARATH4.248e-3895.1240S ribosomal protein S17-2 OS=Arabidopsis thalian... [more]
RS171_ARATH4.248e-3895.1240S ribosomal protein S17-1 OS=Arabidopsis thalian... [more]
RS17_BOVIN2.948e-3176.5440S ribosomal protein S17 OS=Bos taurus GN=RPS17 P... [more]
RS17_PIG3.851e-3176.5440S ribosomal protein S17 OS=Sus scrofa GN=RPS17 P... [more]
RS17_MOUSE3.851e-3176.5440S ribosomal protein S17 OS=Mus musculus GN=Rps17... [more]
RS17_ICTPU3.851e-3176.5440S ribosomal protein S17 OS=Ictalurus punctatus G... [more]
RS17_HUMAN3.851e-3176.5440S ribosomal protein S17 OS=Homo sapiens GN=RPS17... [more]

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Properties
Property NameValue
Genbank descriptionC31705F12EF StrClemenN Citrus clementina cDNA clone C31705F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923498 ID=FC923498; Name=FC923498; organism=Citrus clementina; type=EST; length=358bp
GGCTAGCACTCGTCTTCGCTTTAGCTGCCGCAATCTCTTGACATCTCAAG
CTCTTCTGCTTCACCGTCTTTGTCTTCTTCAAGACAGCAGCAGCAGCTTC
TTAAACTGAAATGGGTCGTGTTCGTACCAAGACCGTGAAGAAGTCCTCTC
GCCAGGTGATTGAGAGGTACTACTCAAGAATGACACTGGACTTCCATACC
AACAAGAAGATTTTGGAGGAGGTTGCTATCATCCCCTCGAAGAGGCTGCG
TAACAAAATTGCTGGGTTCTCAACCCATTTGATGAAGAGGATCAAAAGGG
GTCCAGTTCGTGGAATCTCCCTTAAATTGCAGGAAGAGGAGCGCGACCGC
CGCATGGA
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