FC923499

Overview
NameFC923499
Unique NameFC923499
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923499 vs. ExPASy Swiss-Prot
Match: UBC35_ARATH (Ubiquitin carrier protein E2 35 OS=Arabidopsis thaliana GN=UBC35 PE=1 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 3.447e-78
Identity = 139/151 (92.05%), Postives = 149/151 (98.68%), Query Frame = 3
Query:   66 MASGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYAS 518
            MA+ NLPRRI+KETQRLLSEPAPGISASP+EDNMRYFNVMILGP+QSPYEGGVFKLELFLPE+YPM+APKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLS+NIAKHWK++E EAV+TAKEWTRLYAS
Sbjct:    1 MANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVDTAKEWTRLYAS 151          
BLAST of FC923499 vs. ExPASy Swiss-Prot
Match: UBC36_ARATH (Ubiquitin carrier protein E2 36 OS=Arabidopsis thaliana GN=UBC36 PE=1 SV=1)

HSP 1 Score: 290.812 bits (743), Expect = 4.501e-78
Identity = 139/151 (92.05%), Postives = 149/151 (98.68%), Query Frame = 3
Query:   66 MASGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYAS 518
            MA+ NLPRRI+KETQRLLSEPAPGISASP+E+NMRYFNVMILGP+QSPYEGGVFKLELFLPE+YPM+APKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLS+NIAKHWK++E EAVETAKEWTRLYAS
Sbjct:    1 MANSNLPRRIIKETQRLLSEPAPGISASPSEENMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVETAKEWTRLYAS 151          
BLAST of FC923499 vs. ExPASy Swiss-Prot
Match: UBE2N_DICDI (Probable ubiquitin-conjugating enzyme E2 N OS=Dictyostelium discoideum GN=ube2n PE=3 SV=2)

HSP 1 Score: 249.21 bits (635), Expect = 1.502e-65
Identity = 117/145 (80.69%), Postives = 132/145 (91.03%), Query Frame = 3
Query:   81 LPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 515
            LP+RI+KETQRL++EPAPGISA+PA DN RYF V I GP  SP+EGGVF LELFL +DYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL++++A+HWK +E EA+  A+EWTRLYA
Sbjct:    4 LPKRIIKETQRLMTEPAPGISATPATDNFRYFKVAISGPLDSPFEGGVFNLELFLTDDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEHWKTNEKEAMARAREWTRLYA 148          
BLAST of FC923499 vs. ExPASy Swiss-Prot
Match: UBE2N_RAT (Ubiquitin-conjugating enzyme E2 N OS=Rattus norvegicus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 4.370e-65
Identity = 113/145 (77.93%), Postives = 132/145 (91.03%), Query Frame = 3
Query:   81 LPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 515
            LPRRI+KETQRLL+EP PGI A P E N RYF+V+I GP  SP+EGG FKLELFLPE+YPM+APKVRF+TKIYHPN+DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL++++A+ WK++E +A+ETA+ WTRLYA
Sbjct:    4 LPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKSNEAQAIETARAWTRLYA 148          
BLAST of FC923499 vs. ExPASy Swiss-Prot
Match: UBE2N_PONAB (Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii GN=UBE2N PE=2 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 5.707e-65
Identity = 113/145 (77.93%), Postives = 131/145 (90.34%), Query Frame = 3
Query:   81 LPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 515
            LPRRI+KETQRLL+EP PGI A P E N RYF+V+I GP  SP+EGG FKLELFLPE+YPM+APKVRF+TKIYHPN+DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL++++A+ WK +E +A+ETA+ WTRLYA
Sbjct:    4 LPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYA 148          
BLAST of FC923499 vs. ExPASy Swiss-Prot
Match: UBE2N_MOUSE (Ubiquitin-conjugating enzyme E2 N OS=Mus musculus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 5.707e-65
Identity = 113/145 (77.93%), Postives = 131/145 (90.34%), Query Frame = 3
Query:   81 LPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 515
            LPRRI+KETQRLL+EP PGI A P E N RYF+V+I GP  SP+EGG FKLELFLPE+YPM+APKVRF+TKIYHPN+DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL++++A+ WK +E +A+ETA+ WTRLYA
Sbjct:    4 LPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYA 148          
BLAST of FC923499 vs. ExPASy Swiss-Prot
Match: UBE2N_HUMAN (Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens GN=UBE2N PE=1 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 5.707e-65
Identity = 113/145 (77.93%), Postives = 131/145 (90.34%), Query Frame = 3
Query:   81 LPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 515
            LPRRI+KETQRLL+EP PGI A P E N RYF+V+I GP  SP+EGG FKLELFLPE+YPM+APKVRF+TKIYHPN+DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL++++A+ WK +E +A+ETA+ WTRLYA
Sbjct:    4 LPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYA 148          
BLAST of FC923499 vs. ExPASy Swiss-Prot
Match: UBE2N_BOVIN (Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN=UBE2N PE=2 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 5.707e-65
Identity = 113/145 (77.93%), Postives = 131/145 (90.34%), Query Frame = 3
Query:   81 LPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 515
            LPRRI+KETQRLL+EP PGI A P E N RYF+V+I GP  SP+EGG FKLELFLPE+YPM+APKVRF+TKIYHPN+DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL++++A+ WK +E +A+ETA+ WTRLYA
Sbjct:    4 LPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYA 148          
BLAST of FC923499 vs. ExPASy Swiss-Prot
Match: UBE2N_MACFA (Ubiquitin-conjugating enzyme E2 N OS=Macaca fascicularis GN=UBE2N PE=2 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.833e-64
Identity = 112/145 (77.24%), Postives = 130/145 (89.66%), Query Frame = 3
Query:   81 LPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 515
            LPRRI+KETQRLL+EP PGI A P E N RYF+V+I GP  SP+EGG FKLELFLPE+YPM+APKVRF+TKIYHPN+DK GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL++++A+ WK +E +A+ETA+ WTRLYA
Sbjct:    4 LPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKSGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYA 148          
BLAST of FC923499 vs. ExPASy Swiss-Prot
Match: UBE2N_DROME (Ubiquitin-conjugating enzyme E2 N OS=Drosophila melanogaster GN=ben PE=2 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 6.310e-64
Identity = 110/146 (75.34%), Postives = 133/146 (91.10%), Query Frame = 3
Query:   78 NLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 515
            +LPRRI+KETQRL+ EP PGI+A P E+N RYF+V++ GP+ SP+EGGVFKLELFLPEDYPMSAPKVRF+TKIYHPNID+LGRICLD+LKDKWSPALQIRT+LLSIQALLSAPNPDDPL++++A+ WK +E EA+  A+EWT+ YA
Sbjct:    3 SLPRRIIKETQRLMQEPVPGINAIPDENNARYFHVIVTGPNDSPFEGGVFKLELFLPEDYPMSAPKVRFITKIYHPNIDRLGRICLDVLKDKWSPALQIRTILLSIQALLSAPNPDDPLANDVAELWKVNEAEAIRNAREWTQKYA 148          
The following BLAST results are available for this feature:
BLAST of FC923499 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 251
Match NameE-valueIdentityDescription
UBC35_ARATH3.447e-7892.05Ubiquitin carrier protein E2 35 OS=Arabidopsis tha... [more]
UBC36_ARATH4.501e-7892.05Ubiquitin carrier protein E2 36 OS=Arabidopsis tha... [more]
UBE2N_DICDI1.502e-6580.69Probable ubiquitin-conjugating enzyme E2 N OS=Dict... [more]
UBE2N_RAT4.370e-6577.93Ubiquitin-conjugating enzyme E2 N OS=Rattus norveg... [more]
UBE2N_PONAB5.707e-6577.93Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii ... [more]
UBE2N_MOUSE5.707e-6577.93Ubiquitin-conjugating enzyme E2 N OS=Mus musculus ... [more]
UBE2N_HUMAN5.707e-6577.93Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens ... [more]
UBE2N_BOVIN5.707e-6577.93Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN... [more]
UBE2N_MACFA2.833e-6477.24Ubiquitin-conjugating enzyme E2 N OS=Macaca fascic... [more]
UBE2N_DROME6.310e-6475.34Ubiquitin-conjugating enzyme E2 N OS=Drosophila me... [more]

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Properties
Property NameValue
Genbank descriptionC31705G01EF StrClemenN Citrus clementina cDNA clone C31705G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923499 ID=FC923499; Name=FC923499; organism=Citrus clementina; type=EST; length=688bp
GGAGGGAGAGGGAAAAAAAGACGATCGATTTCTGACTCATCTCTGTAAAA
TCTCTTGGAATTCCGATGGCTAGTGGCAACCTCCCTCGCAGAATTGTCAA
GGAAACCCAGCGGCTGCTCAGTGAACCAGCTCCGGGCATTAGTGCTTCTC
CTGCCGAAGACAACATGCGATATTTTAATGTAATGATTCTTGGTCCATCT
CAGTCTCCTTATGAAGGTGGGGTTTTCAAGTTGGAGTTGTTTTTGCCTGA
AGATTATCCAATGTCCGCTCCTAAGGTTCGATTTCTGACCAAAATATATC
ATCCTAACATAGACAAGCTTGGAAGGATATGCCTTGATATTTTGAAAGAT
AAATGGAGTCCCGCCCTGCAAATCCGCACAGTCCTGCTGAGTATCCAAGC
TCTTTTGAGTGCTCCGAACCCAGACGATCCACTTTCTGATAACATTGCAA
AGCATTGGAAGGCAGATGAGACTGAAGCTGTTGAAACTGCGAAGGAATGG
ACCCGGTTATATGCAAGTGATGGGTGAAGGCTAGAGCTTGTTCGAGAATA
TCTCTCTACAAGTTTATGTTAAAAACACTAATTGATGTATGAACAGATGT
GTAAAAATGTTTCTCGGCCGGGGTATTTACTCTTAGTTCCTGGATATCTC
CTACGGGTATTAAATGGTTTAAATCCATTGGATTTTGT
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