FC923501

Overview
NameFC923501
Unique NameFC923501
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3409 contig Ccv1_Contig3409:1001..1720. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923501 vs. ExPASy Swiss-Prot
Match: GH35_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.5 OS=Oryza sativa subsp. japonica GN=GH3.5 PE=2 SV=1)

HSP 1 Score: 352.829 bits (904), Expect = 1.044e-96
Identity = 169/244 (69.26%), Postives = 206/244 (84.43%), Query Frame = 2
Query:    2 FREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPSIRAAMSKILKPKPELADLIHKKCSGLSNWYGLIPELFPNAKYLSRIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIP--QRLG---NLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAGLYRYRLGDVVKVMGFHNSTPELKFICRRNLFATINIDKNTEKDLQLS 718
            + EE+  VFSTFAHSLVHAF+TFE VWE+LC DIR+GVLS ++T PSIR A+SKILKP PELAD I+KKC GLSNWYG+IP L+PNAKY+  IMTGSME YLKKLRHYAG+LPL+SADYG+SEGW+G+N++P++PPE  T+AVLP +GYFEFIP  + +G      + +  IE  PVGLTEV+VG+ YE+++TN AGLYRYRLGDVVK+  FHNSTPEL+FICRR+L  +INIDKNTEKDLQL+
Sbjct:  205 YSEEVHSVFSTFAHSLVHAFQTFEEVWEDLCTDIRDGVLSKKVTAPSIREAVSKILKPNPELADSIYKKCIGLSNWYGVIPALWPNAKYVYGIMTGSMEPYLKKLRHYAGNLPLISADYGASEGWVGSNIDPTVPPEQVTYAVLPQVGYFEFIPLEKPIGEETENSASIHYIESDPVGLTEVEVGKIYEVVITNFAGLYRYRLGDVVKIARFHNSTPELQFICRRSLVLSINIDKNTEKDLQLA 448          
BLAST of FC923501 vs. ExPASy Swiss-Prot
Match: GH312_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.12 OS=Oryza sativa subsp. japonica GN=GH3.12 PE=2 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 4.134e-69
Identity = 129/252 (51.19%), Postives = 171/252 (67.86%), Query Frame = 2
Query:   11 EIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLS-SRITVPSIRAAMSKILK-PKPELADLIHKKCSGLSNWYGLIPELFPNAKYLSRIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQR--------------LGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAGLYRYRLGDVVKVMGFHNSTPELKFICRRNLFATINIDKNTEKDLQLS 718
            E++ V ++FAHS+V A +  E VW ELC DIR G  S +R+T P++R A++ IL  P P LAD + ++C+ L +W G+IP L+PNA+Y+   MTGSMEHY+KKLRHYAG +PL+S +Y SSEG IG N     PPE   F VLP+  YFEFIP +                     V   +  PVGLT+V VGE YE+++T   GLYRYRLGDVVKV GFH++TP+L+F+CRR+L  +IN+DKN+E DLQL+
Sbjct:  219 EVRAVSASFAHSIVVALQALERVWRELCADIRRGAASPARVTTPAVRRAVAPILAAPNPALADALERRCAALGDWSGVIPALWPNARYVQATMTGSMEHYVKKLRHYAGGVPLVSGNYASSEGVIGINAEQHAPPESVVFTVLPDAAYFEFIPLKPPCTDAAADDDNPAAAGSSCYVDADDANPVGLTDVVVGEHYEVVMTTFTGLYRYRLGDVVKVAGFHHATPKLRFVCRRSLILSINVDKNSEHDLQLA 470          
BLAST of FC923501 vs. ExPASy Swiss-Prot
Match: GH33_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.3 OS=Oryza sativa subsp. japonica GN=GH3.3 PE=2 SV=2)

HSP 1 Score: 233.802 bits (595), Expect = 7.068e-61
Identity = 119/218 (54.59%), Postives = 156/218 (71.56%), Query Frame = 2
Query:   11 EIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLS-SRITVPSIRAAMSKILK-PKPELADLIHKKCSGLSNWYGLIPELFPNAKYLSRIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAGLYRYRLGDVVKVMGFHNSTPELKFICR 658
            ++Q+V +TFAHS+V AF+TFE  WE+LC DIR G +S SR+T P++R AM+ +L  P P LAD + +KC+ LSNWYG+IP L+PNA+Y+  IMTGSMEHY+KKLRHYAG LPL++A+YG+SEGW+GANV P  PPE ATF VLP+I YFEFIP  L  +       E +PVGLTEV  GE YE+++T  AG  R     +  V  ++  + +   ICR
Sbjct:  219 DVQIVSATFAHSVVLAFQTFERAWEDLCADIRRGEVSPSRVTSPAVRRAMAALLAAPNPGLADEVARKCAALSNWYGVIPALWPNARYVYGIMTGSMEHYVKKLRHYAGGLPLVAAEYGASEGWVGANVEPGTPPERATFTVLPDIAYFEFIP--LKPVAGDGGYAEAEPVGLTEVAAGELYEVVMTTFAGNTRSSSSCMTLVAYYYLQSKKWMNICR 434          
BLAST of FC923501 vs. ExPASy Swiss-Prot
Match: GH33_ARATH (Indole-3-acetic acid-amido synthetase GH3.3 OS=Arabidopsis thaliana GN=GH3.3 PE=1 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 5.077e-51
Identity = 101/237 (42.62%), Postives = 148/237 (62.45%), Query Frame = 2
Query:    5 REEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPSIRAAMSKIL-KPKPELADLIHKKCSGLSNWYGLIPELFPNAKYLSRIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAGLYRYRLGDVVKVMGFHNSTPELKFICRRNLFATINIDKNTEKDLQ 712
            R E+  + + FA  L+ A    +  W+EL DDI  G LSSRI+ P+I+ +MSKIL KP  ELAD I   C   ++W G+I +++PN KYL  I+TG+M  Y+  L +Y+G LP+    Y SSE + G N+ P   P   ++ ++PN+ YFEF+P      E   L      V L +V+VG+EYE+++T  AGL RYR+GD+++V GF+NS P+ KF+ R+N+  +I  DK  E +LQ
Sbjct:  220 RHEVLRLGAVFASGLLRAIGFLQTNWKELADDISTGTLSSRISDPAIKESMSKILTKPDQELADFITSVCGQDNSWEGIITKIWPNTKYLDVIVTGAMAQYIPMLEYYSGGLPMACTMYASSESYFGINLKPMCKPSEVSYTIMPNMAYFEFLPHHEVPTEKSEL------VELADVEVGKEYELVITTYAGLNRYRVGDILQVTGFYNSAPQFKFVRRKNVLLSIESDKTDEAELQ 450          
BLAST of FC923501 vs. ExPASy Swiss-Prot
Match: GH38_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.8 OS=Oryza sativa subsp. japonica GN=GH3.8 PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 6.631e-51
Identity = 100/237 (42.19%), Postives = 146/237 (61.60%), Query Frame = 2
Query:    5 REEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPSIRAAMSKILKPKPELADLIHKKCSGLSNWYGLIPELFPNAKYLSRIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIP-QRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAGLYRYRLGDVVKVMGFHNSTPELKFICRRNLFATINIDKNTEKDLQ 712
            R ++  + + FA  L+ A R  +L WE+L DDI  G L+ R+T PS+R A++ IL P PELA LI  +CS   +W G+I  ++PN KYL  I+TG+M  Y+  L  Y+G LP+    Y SSE + G N+ P   P   ++ ++PN+GYFEF+P    G        +    V L  V+VG EYE+++T  AGL RYR+GDV++V GFHN+ P+ +F+ R+N+  +I  DK  E +LQ
Sbjct:  227 RNDVLRLGAVFASGLLRAIRFLQLNWEQLADDIESGELTPRVTDPSVREAVAAILLPDPELAKLIRAECSK-GDWAGIITRVWPNTKYLDVIVTGAMAQYIPTLEFYSGGLPMACTMYASSECYFGLNLRPMCDPSEVSYTIMPNMGYFEFLPVDETGAASGDATQL----VDLARVEVGREYELVITTYAGLNRYRVGDVLRVTGFHNAAPQFRFVRRKNVLLSIESDKTDEAELQ 458          
BLAST of FC923501 vs. ExPASy Swiss-Prot
Match: GH38_ORYSI (Probable indole-3-acetic acid-amido synthetase GH3.8 OS=Oryza sativa subsp. indica GN=GH3.8 PE=2 SV=2)

HSP 1 Score: 200.675 bits (509), Expect = 6.631e-51
Identity = 100/237 (42.19%), Postives = 146/237 (61.60%), Query Frame = 2
Query:    5 REEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPSIRAAMSKILKPKPELADLIHKKCSGLSNWYGLIPELFPNAKYLSRIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIP-QRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAGLYRYRLGDVVKVMGFHNSTPELKFICRRNLFATINIDKNTEKDLQ 712
            R ++  + + FA  L+ A R  +L WE+L DDI  G L+ R+T PS+R A++ IL P PELA LI  +CS   +W G+I  ++PN KYL  I+TG+M  Y+  L  Y+G LP+    Y SSE + G N+ P   P   ++ ++PN+GYFEF+P    G        +    V L  V+VG EYE+++T  AGL RYR+GDV++V GFHN+ P+ +F+ R+N+  +I  DK  E +LQ
Sbjct:  227 RNDVLRLGAVFASGLLRAIRFLQLNWEQLADDIESGELTPRVTDPSVREAVAAILLPDPELAKLIRAECSK-GDWAGIITRVWPNTKYLDVIVTGAMAQYIPTLEFYSGGLPMACTMYASSECYFGLNLRPMCDPSEVSYTIMPNMGYFEFLPVDETGAASGDATQL----VDLARVEVGREYELVITTYAGLNRYRVGDVLRVTGFHNAAPQFRFVRRKNVLLSIESDKTDEAELQ 458          
BLAST of FC923501 vs. ExPASy Swiss-Prot
Match: GH36_ARATH (Indole-3-acetic acid-amido synthetase GH3.6 OS=Arabidopsis thaliana GN=GH3.6 PE=1 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.929e-50
Identity = 100/243 (41.15%), Postives = 148/243 (60.91%), Query Frame = 2
Query:    8 EEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPSIRAAMSKILKPKPELADLIHKKCSGLSNWYGLIPELFPNAKYLSRIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCI--------EPKPVGLTEVKVGEEYEIIVTNVAGLYRYRLGDVVKVMGFHNSTPELKFICRRNLFATINIDKNTEKDLQ 712
            +E+  V + FA   + A +  E  W EL  DIR G LSS IT  S+R A+ +ILKP P+LAD +  +C   S W G+I  L+PN KY+  I+TG+M  Y+  L +Y+  LPL+   Y SSE + G N+ P   P   ++ ++PN+ YFEF+P    +  +  + +        + + V L +VK+G+EYE++VT  AGLYRYR+GDV+ V GF N+ P+  FICR+N+  +I+ DK  E +LQ
Sbjct:  223 KEVLRVGAVFASGFIRAIKFLEKHWPELARDIRTGTLSSEITDSSVREAVGEILKPDPKLADFVESECRKTS-WQGIITRLWPNTKYVDVIVTGTMSQYIPTLDYYSNGLPLVCTMYASSECYFGVNLRPLCKPSEVSYTLIPNMAYFEFLPVHRNSGVTSSISLPKALTEKEQQELVDLVDVKLGQEYELVVTTYAGLYRYRVGDVLSVAGFKNNAPQFSFICRKNVVLSIDSDKTDEVELQ 464          
BLAST of FC923501 vs. ExPASy Swiss-Prot
Match: GH32_ARATH (Indole-3-acetic acid-amido synthetase GH3.2 OS=Arabidopsis thaliana GN=GH3.2 PE=1 SV=2)

HSP 1 Score: 198.749 bits (504), Expect = 2.520e-50
Identity = 102/238 (42.86%), Postives = 148/238 (62.18%), Query Frame = 2
Query:    5 REEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPSIRAAMSKIL-KPKPELADLIHKKCSGLSNWYGLIPELFPNAKYLSRIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRL-GNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAGLYRYRLGDVVKVMGFHNSTPELKFICRRNLFATINIDKNTEKDLQ 712
            R E+  + + FA  L+ A    +  W+EL  DI  G LSSRI  P+I+  MSKIL KP  ELA+ +   CS   NW G+I +++PN KYL  I+TG+M  Y+  L +Y+G LP+    Y SSE + G N+ P   P   ++ ++PN+ YFEF+P    G+  ++    E   V L  V+VG+EYE+++T  AGLYRYR+GD+++V GFHNS P+ KFI R+N+  ++  DK  E +LQ
Sbjct:  221 RHEVLRLGAVFASGLLRAISFLQNNWKELARDISTGTLSSRIFDPAIKNRMSKILTKPDQELAEFLVGVCSQ-ENWEGIITKIWPNTKYLDVIVTGAMAQYIPTLEYYSGGLPMACTMYASSESYFGINLKPMCKPSEVSYTIMPNMAYFEFLPHNHDGDGAAEASLDETSLVELANVEVGKEYELVITTYAGLYRYRVGDILRVTGFHNSAPQFKFIRRKNVLLSVESDKTDEAELQ 457          
BLAST of FC923501 vs. ExPASy Swiss-Prot
Match: GH35_ARATH (Indole-3-acetic acid-amido synthetase GH3.5 OS=Arabidopsis thaliana GN=GH3.5 PE=1 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.298e-50
Identity = 100/243 (41.15%), Postives = 150/243 (61.73%), Query Frame = 2
Query:    8 EEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPSIRAAMSKILKPKPELADLIHKKCSGLSNWYGLIPELFPNAKYLSRIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCI--------EPKPVGLTEVKVGEEYEIIVTNVAGLYRYRLGDVVKVMGFHNSTPELKFICRRNLFATINIDKNTEKDLQ 712
            +E+  V + FA   + A +  E  W EL  DIR G LSS IT PS+R A++KILKP P+LAD +  +C   S+W G+I  L+PN KY+  I+TG+M  Y+  L +Y+  LPL+   Y SSE + G N+ P   P   ++ ++P++ YFEF+P    N  +  + +        + + V L +VK+G+EYE++VT  AGL RYR+GD+++V GF N  P+  FICR+N+  +I+ DK  E +LQ
Sbjct:  223 QEVLRVGAVFASGFIRAIKFLEKHWIELVRDIRTGTLSSLITDPSVREAVAKILKPSPKLADFVEFECKK-SSWQGIITRLWPNTKYVDVIVTGTMSQYIPTLDYYSNGLPLVCTMYASSECYFGVNLRPLCKPSEVSYTLIPSMAYFEFLPVHRNNGVTNSINLPKALTEKEQQELVDLVDVKLGQEYELVVTTYAGLCRYRVGDLLRVTGFKNKAPQFSFICRKNVVLSIDSDKTDEVELQ 464          
BLAST of FC923501 vs. ExPASy Swiss-Prot
Match: GH31_ARATH (Probable indole-3-acetic acid-amido synthetase GH3.1 OS=Arabidopsis thaliana GN=GH3.1 PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.614e-50
Identity = 102/236 (43.22%), Postives = 141/236 (59.75%), Query Frame = 2
Query:    5 REEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPSIRAAMSKILKPKPELADLIHKKCSGLSNWYGLIPELFPNAKYLSRIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAGLYRYRLGDVVKVMGFHNSTPELKFICRRNLFATINIDKNTEKDLQ 712
            R  +  V + FA  L+ A R  +L W     DI  G L S IT PSIR  MS ILKP P LA+ I ++C    NW  +I  ++PN KYL  I+TG+M  Y+  L +Y+G LP+    Y SSE + G N+NP   P   ++ ++PN+ YFEFIP  LG           K V L +V +G+EYE++VT  AGL RYR+GD+++V GFHNS P+  F+ R+N+  +I+ DK  E +LQ
Sbjct:  220 RLSVLRVGAVFASGLLRAIRFLQLHWSRFAHDIELGCLDSEITDPSIRQCMSGILKPDPVLAEFIRRECKS-DNWEKIITRIWPNTKYLDVIVTGAMAQYIPTLEYYSGGLPMACTMYASSECYFGLNLNPMSKPSEVSYTIMPNMAYFEFIP--LGG---------TKAVELVDVNIGKEYELVVTTYAGLCRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDESELQ 443          
The following BLAST results are available for this feature:
BLAST of FC923501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
GH35_ORYSJ1.044e-9669.26Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH312_ORYSJ4.134e-6951.19Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH33_ORYSJ7.068e-6154.59Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH33_ARATH5.077e-5142.62Indole-3-acetic acid-amido synthetase GH3.3 OS=Ara... [more]
GH38_ORYSJ6.631e-5142.19Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH38_ORYSI6.631e-5142.19Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH36_ARATH1.929e-5041.15Indole-3-acetic acid-amido synthetase GH3.6 OS=Ara... [more]
GH32_ARATH2.520e-5042.86Indole-3-acetic acid-amido synthetase GH3.2 OS=Ara... [more]
GH35_ARATH4.298e-5041.15Indole-3-acetic acid-amido synthetase GH3.5 OS=Ara... [more]
GH31_ARATH5.614e-5043.22Probable indole-3-acetic acid-amido synthetase GH3... [more]

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Properties
Property NameValue
Genbank descriptionC31705G03EF StrClemenN Citrus clementina cDNA clone C31705G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923501 ID=FC923501; Name=FC923501; organism=Citrus clementina; type=EST; length=720bp
CTTCAGGGAAGAGATTCAACTTGTATTCTCAACCTTTGCCCATAGTCTTG
TTCATGCTTTTCGGACATTTGAGCTCGTTTGGGAAGAGCTATGTGATGAT
ATAAGGGAAGGGGTTCTTTCCAGCAGAATCACTGTCCCTTCAATCAGGGC
GGCTATGTCAAAAATTCTCAAGCCAAAGCCTGAATTGGCCGATTTGATCC
ATAAAAAATGCTCAGGATTGAGTAATTGGTATGGGTTAATACCTGAGCTT
TTTCCTAATGCGAAGTACCTGTCTAGAATCATGACTGGGTCAATGGAGCA
TTATCTGAAAAAGTTGAGGCACTATGCAGGGGACCTTCCTCTTATGAGCG
CTGATTATGGTTCTTCTGAGGGGTGGATTGGAGCAAATGTGAATCCAAGT
TTGCCCCCAGAGTTGGCTACGTTTGCTGTGCTTCCTAATATCGGATATTT
TGAGTTCATTCCTCAGAGGTTGGGGAATCTTGAGAGCCAAGTTCTTTGCA
TAGAACCCAAGCCAGTAGGATTGACTGAAGTCAAAGTTGGGGAAGAGTAT
GAGATCATTGTCACCAATGTTGCAGGTTTGTATCGGTACCGGCTAGGGGA
TGTGGTGAAGGTTATGGGCTTCCATAATTCAACCCCAGAACTCAAATTTA
TTTGCAGGAGGAACCTATTTGCTACCATAAACATTGACAAGAACACTGAG
AAGGATTTGCAGCTATCTGT
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