FC923503

Overview
NameFC923503
Unique NameFC923503
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14188 contig Ccv1_Contig14188:12..739. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923503 vs. ExPASy Swiss-Prot
Match: ILR3_ARATH (Transcription factor ILR3 OS=Arabidopsis thaliana GN=ILR3 PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.735e-41
Identity = 104/192 (54.17%), Postives = 120/192 (62.50%), Query Frame = 3
Query:  123 MSSPYNSNWIFDCGLLDG------IGVSGGDLPSLDPPEVLWSSSTSNPPLSAEFDDSFGNLDAFKETGSRKRVXXXXXXXXXXXXXXEKMRRDRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNENLLGKINELKCEKNELRDEKQRLKNEKENLERQVKALSS-QPAFLPHPP 677
            M SP N+NWI  C L+D       I   G   P   P  V   SS S    SA  D S GN +A KE GS+KR               EK RRDRLND+FMEL +IL+PG PPK DK  +L DAV+MVTQLR EAQKLK SN +L  KI ELK EKNELRDEKQRLK EKE LE+Q+KA+++ QP+F P PP
Sbjct:    1 MVSPENANWI--CDLIDADYGSFTIQGPGFSWPVQQPIGV---SSNS----SAGVDGSAGNSEASKEPGSKKRGRCESSSATSSKACREKQRRDRLNDKFMELGAILEPGNPPKTDKAAILVDAVRMVTQLRGEAQKLKDSNSSLQDKIKELKTEKNELRDEKQRLKTEKEKLEQQLKAMNAPQPSFFPAPP 183          
BLAST of FC923503 vs. ExPASy Swiss-Prot
Match: BH115_ARATH (Transcription factor bHLH115 OS=Arabidopsis thaliana GN=BHLH115 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.121e-36
Identity = 88/188 (46.81%), Postives = 112/188 (59.57%), Query Frame = 3
Query:  123 MSSPYNSNWIFDCGLLDGIGVSGGDLPSLDPPEVLWSSSTSNPPLSAEFDDSFGNLDAFKETGSRKRVXXXXXXXXXXXXXXEKMRRDRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNENLLGKINELKCEKNELRDEKQRLKNEKENLERQVKALSS----QPAFLPHP 674
            M SP N+NW+ D  L++G         S   P   W    S   +S E D    + D  KE  SRKR+              EK RRDRLND+F EL+S+L+PGR PK DK  ++ DA++MV Q RDEAQKLK  N +L  KI ELK EKNELRDEKQ+LK EKE +++Q+KA+ +    QP FLP+P
Sbjct:    1 MVSPENTNWLSDYPLIEGAF-------SDQNPTFPWQIDGS-ATVSVEVDGFLCDADVIKEPSSRKRIKTESCTGSNSKACREKQRRDRLNDKFTELSSVLEPGRTPKTDKVAIINDAIRMVNQARDEAQKLKDLNSSLQEKIKELKDEKNELRDEKQKLKVEKERIDQQLKAIKTQPQPQPCFLPNP 180          
BLAST of FC923503 vs. ExPASy Swiss-Prot
Match: BH034_ARATH (Transcription factor bHLH34 OS=Arabidopsis thaliana GN=BHLH34 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.874e-26
Identity = 60/135 (44.44%), Postives = 88/135 (65.19%), Query Frame = 3
Query:  291 DAFKETGSRKRVXXXXXXXXXXXXXXEKMRRDRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNENLLGKINELKCEKNELRDEKQRLKNEKENLERQVKAL-SSQPAFLPHPPPVRLH 692
            + F+E  S KR               EK+RR++LND+FM+L+S+L+PGR PK DK+ +L DA+++V QLR EA +L+ +N+ LL +I  LK +KNELR+EK  LK EKE +E+Q+K++    P F+P   P   H
Sbjct:  145 EEFEEECSGKRRRTGSCSKPGTKACREKLRREKLNDKFMDLSSVLEPGRTPKTDKSAILDDAIRVVNQLRGEAHELQETNQKLLEEIKSLKADKNELREEKLVLKAEKEKMEQQLKSMVVPSPGFMPSQHPAAFH 279          
BLAST of FC923503 vs. ExPASy Swiss-Prot
Match: BH104_ARATH (Transcription factor bHLH104 OS=Arabidopsis thaliana GN=BHLH104 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.400e-25
Identity = 55/109 (50.46%), Postives = 82/109 (75.23%), Query Frame = 3
Query:  369 EKMRRDRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNENLLGKINELKCEKNELRDEKQRLKNEKENLERQVKALSS-QPAFLPHPPPVRLH 692
            E++RR++LN+RFM+L+S+L+PGR PK DK  +L DA++++ QLRDEA KL+ +N+ LL +I  LK EKNELR+EK  LK +KE  E+Q+K++++    F+PH P    H
Sbjct:  139 ERLRREKLNERFMDLSSVLEPGRTPKTDKPAILDDAIRILNQLRDEALKLEETNQKLLEEIKSLKAEKNELREEKLVLKADKEKTEQQLKSMTAPSSGFIPHIPAAFNH 247          
BLAST of FC923503 vs. ExPASy Swiss-Prot
Match: BH121_ARATH (Transcription factor bHLH121 OS=Arabidopsis thaliana GN=BHLH121 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.580e-15
Identity = 47/113 (41.59%), Postives = 71/113 (62.83%), Query Frame = 3
Query:  369 EKMRRDRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNENLLGKINELKCEKNELRDEKQRLKNEKENL----ERQVKALSSQPAFLPH-----PPP 680
            EK+RR++LN+ F+EL ++LDP RP K DK  +L D VQ++ +L  E  KLK     L  +  EL  EKN+LR+EK  LK++ ENL    +++++++S   A + H     PPP
Sbjct:   67 EKLRREKLNEHFVELGNVLDPERP-KNDKATILTDTVQLLKELTSEVNKLKSEYTALTDESRELTQEKNDLREEKTSLKSDIENLNLQYQQRLRSMSPWGAAMDHTVMMAPPP 178          
BLAST of FC923503 vs. ExPASy Swiss-Prot
Match: BH011_ARATH (Transcription factor bHLH11 OS=Arabidopsis thaliana GN=BHLH11 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.523e-13
Identity = 41/102 (40.20%), Postives = 64/102 (62.75%), Query Frame = 3
Query:  369 EKMRRDRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNENLLGKINELKCEKNELRDEKQRLKNEKENLERQVK-ALSSQPAFLPH 671
            EK+RRD+L ++F+EL + LDP RP K DK  +L D +QM+  + ++  +LK   E L  +  EL  EK+ELR+EK  LK++ E L  Q +  + +   ++PH
Sbjct:   53 EKLRRDKLKEQFLELGNALDPNRP-KSDKASVLTDTIQMLKDVMNQVDRLKAEYETLSQESRELIQEKSELREEKATLKSDIEILNAQYQHRIKTMVPWVPH 153          
The following BLAST results are available for this feature:
BLAST of FC923503 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ILR3_ARATH3.735e-4154.17Transcription factor ILR3 OS=Arabidopsis thaliana ... [more]
BH115_ARATH2.121e-3646.81Transcription factor bHLH115 OS=Arabidopsis thalia... [more]
BH034_ARATH9.874e-2644.44Transcription factor bHLH34 OS=Arabidopsis thalian... [more]
BH104_ARATH6.400e-2550.46Transcription factor bHLH104 OS=Arabidopsis thalia... [more]
BH121_ARATH1.580e-1541.59Transcription factor bHLH121 OS=Arabidopsis thalia... [more]
BH011_ARATH2.523e-1340.20Transcription factor bHLH11 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionC31705G06EF StrClemenN Citrus clementina cDNA clone C31705G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923503 ID=FC923503; Name=FC923503; organism=Citrus clementina; type=EST; length=728bp
GAGTTCACTCGTTCCACTTTTATGATCTTTTTCATTCCTAAGGCACGCCG
TTTGACTCGTAACATCATCATCACATTGCCATTGCCAGTGAGACACAGCC
GGATTATAACGGTGCAGGAGATATGTCATCACCCTATAATTCCAACTGGA
TATTCGATTGTGGTTTGTTAGATGGCATTGGAGTCTCTGGTGGCGACCTC
CCCTCCCTTGATCCTCCGGAGGTTCTTTGGTCTTCTTCCACCTCAAATCC
TCCTCTCAGTGCGGAATTCGATGATTCCTTTGGCAATTTGGATGCTTTCA
AGGAAACTGGCTCCAGGAAAAGGGTGAGATCTGGATCCTGCAGTGCATCT
GGTTCTAAAGCTTGTAGAGAGAAAATGCGAAGAGATAGGCTGAATGACAG
GTTCATGGAATTGGCTTCTATTCTGGATCCTGGGAGGCCTCCTAAAATGG
ACAAGACAGTTTTATTGGCTGATGCTGTTCAGATGGTGACTCAACTGCGT
GATGAAGCTCAAAAACTTAAGGTGTCAAATGAAAATCTGTTGGGGAAGAT
CAATGAATTAAAGTGTGAGAAGAATGAGCTTCGTGACGAGAAACAGAGGC
TAAAAAATGAGAAGGAAAATCTTGAGAGGCAAGTAAAGGCCTTGAGTTCT
CAGCCTGCCTTCTTACCTCATCCTCCTCCAGTCCGGCTCCATTTTCTGCA
CAGGTCAAGTTGTGGTGGCAATTGGTGC
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