FC923511

Overview
NameFC923511
Unique NameFC923511
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8347 contig Ccv1_Contig8347:271..965. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC923511 vs. ExPASy Swiss-Prot
Match: FB76_ARATH (F-box protein At1g67340 OS=Arabidopsis thaliana GN=At1g67340 PE=1 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 6.242e-75
Identity = 144/220 (65.45%), Postives = 172/220 (78.18%), Query Frame = 2 
Query:   50 VLSKLISSAPSPSDFINVLLTCKRLNRVGLRPTVLSQAGPKALAVKAKNWSDSAHRFLKRCVFAGNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKSHAPALYSLAVIQFNGSGGGKNEKDLRAGVALFARAASIGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREFFQSVSKTRTRHQSYYFQLARATDAQIP-----CSPLLSDFGYNVEA 694
            +L KL S++  P+DFINVLLTCKRL  + + P VLS+  PKA+AVKA NWS+ +HRFLKRCV AG+LEACYTLGMIRFYCLQNR +G SLMAKAA+ SHAPALYSLAVIQFNGSGG KN+KDLRAGVAL ARAA +GHVDA+RELGHCLQDGYGV QN+ +GRR L++ANARE   +V  +  + +S +  L++     +P       PLLSDFG NV A
Sbjct:   55 ILCKLGSTSRCPADFINVLLTCKRLKGLAMNPIVLSRLSPKAIAVKAHNWSEYSHRFLKRCVDAGSLEACYTLGMIRFYCLQNRGNGASLMAKAAISSHAPALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHVDALRELGHCLQDGYGVPQNVSEGRRFLVQANARE-LAAVLSSGIQARSTWLSLSQPPPPVVPNHGQQTCPLLSDFGCNVPA 273
The following BLAST results are available for this feature:
BLAST of FC923511 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
FB76_ARATH6.242e-7565.45F-box protein At1g67340 OS=Arabidopsis thaliana GN... [more]
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Properties
Property NameValue
Genbank descriptionC31705H02EF StrClemenN Citrus clementina cDNA clone C31705H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923511 ID=FC923511; Name=FC923511; organism=Citrus clementina; type=EST; length=695bp
GGAGAAACCTGATCTTTTCGACGCACTTCCCGACGATCTCCTCGAATGCG
TCCTCTCCAAGCTCATCTCCTCTGCTCCTTCCCCTTCCGATTTCATCAAC
GTTCTCTTAACATGCAAGAGATTGAACCGTGTAGGTCTCCGTCCGACGGT
CTTGTCACAAGCCGGTCCGAAAGCACTTGCAGTCAAAGCCAAAAACTGGT
CAGATTCTGCGCACCGTTTCCTAAAACGCTGCGTCTTCGCCGGTAACCTC
GAGGCTTGCTATACTCTCGGCATGATCCGATTTTACTGTTTACAAAACCG
TTCGAGCGGAACATCTCTGATGGCCAAGGCCGCGATGAAGTCGCACGCGC
CGGCTCTTTACTCTCTCGCCGTGATACAGTTCAACGGCAGCGGAGGCGGA
AAGAACGAGAAAGATCTCCGAGCCGGAGTCGCACTCTTCGCTCGAGCCGC
CTCGATCGGCCACGTGGACGCCGTACGCGAGCTCGGGCATTGCCTTCAGG
ACGGCTACGGAGTGCGACAAAACATCGAGAAGGGACGCCGGTTGCTGATC
GAAGCGAATGCACGTGAGTTCTTTCAGTCCGTATCTAAGACGAGGACACG
TCATCAGAGCTATTACTTCCAACTCGCTCGTGCCACCGATGCGCAGATTC
CGTGCAGTCCGTTGTTAAGTGATTTCGGTTATAATGTGGAGGCGC
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