FC923513

Overview
NameFC923513
Unique NameFC923513
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC923513_ssr201 microsatellite FC923513_ssr201:201..218. BLAST: Citrus ESTs to Prunus persica proteins V1
FC923513_ssr324 microsatellite FC923513_ssr324:324..335. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14485 contig Ccv1_Contig14485:1..738. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923513 vs. ExPASy Swiss-Prot
Match: IF2B_MALDO (Eukaryotic translation initiation factor 2 subunit beta OS=Malus domestica PE=2 SV=2)

HSP 1 Score: 280.411 bits (716), Expect = 6.901e-75
Identity = 145/204 (71.08%), Postives = 160/204 (78.43%), Query Frame = 3
Query:  132 MTDENQVDVKDEV-AELAPFDPTXXXXXXXVVIQDPSDDSVDKLAEITETLSVSEGLESTFTGLXXXXXXPVESSLLNDEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDG-QRLVVKGRF 737
            M D+NQ +VKDEV A++APFDPT       VVIQD +DDSV KLAE  E  + SEG ESTF GL      P+E+S+LN+E GDA +DL+   GED+E +G       YPWEGSDRDY YEELL RVF ILRENNP+LAGDRRRTVMRPPQVLREGTKK VFVNFMDLCKTMHRQPDHVM FLLAELGTSGSLDG QRLVVKGRF
Sbjct:    1 MADDNQNEVKDEVVADIAPFDPTKKKKKKEVVIQDTTDDSVGKLAEKAEACTASEGQESTFAGLKKKKKKPIETSILNEESGDAVEDLNERTGEDEEGEGIVLETPSYPWEGSDRDYTYEELLDRVFTILRENNPDLAGDRRRTVMRPPQVLREGTKKAVFVNFMDLCKTMHRQPDHVMAFLLAELGTSGSLDGQQRLVVKGRF 204          
BLAST of FC923513 vs. ExPASy Swiss-Prot
Match: IF2B_WHEAT (Eukaryotic translation initiation factor 2 subunit beta OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 6.684e-70
Identity = 140/205 (68.29%), Postives = 159/205 (77.56%), Query Frame = 3
Query:  132 MTDENQVDVKDEVAELAPFDPTXXXXXXXVVIQDPSDDSVDKLAEITETLSVSEGLESTFTGLXXXXXXPVESSLLNDEIGDAGDDLDGHVGEDDEADGS--GGPRQRYPWEGSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDG-QRLVVKGRF 737
            M DE Q++ K+E  E+APFDPT       VVIQDP+D+ VDKLAE TE LSV+E  E++F GL       VE      E GD  D LD  VGED++ +G   GG  Q YPWEG+DRDY+Y+ELLGRVFNILRENNP+LAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQP+HVM FLLAE+GTSGSLDG QRLV+KGRF
Sbjct:    1 MADEEQMERKEEATEIAPFDPTKKKKKKKVVIQDPADE-VDKLAEKTEGLSVTESGEASFVGLKKKKKKLVELDPSLVEAGDGEDTLDDQVGEDEQGEGIVLGGATQ-YPWEGTDRDYKYDELLGRVFNILRENNPDLAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPEHVMMFLLAEMGTSGSLDGQQRLVIKGRF 203          
BLAST of FC923513 vs. ExPASy Swiss-Prot
Match: IF2B_ARATH (Eukaryotic translation initiation factor 2 subunit beta OS=Arabidopsis thaliana GN=EMB1401 PE=2 SV=3)

HSP 1 Score: 257.684 bits (657), Expect = 4.790e-68
Identity = 134/204 (65.69%), Postives = 159/204 (77.94%), Query Frame = 3
Query:  132 MTDENQVDVKDEVAELAPFDPTXXXXXXXVVIQDPSDDSVDKL-AEITETLSVSEGLESTFTGLXXXXXXPVESSLLNDEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDG-QRLVVKGRF 737
            M DE   ++++E  +LAPFDP+       VVIQ+P +D  +    E +++L V++GLES+FTG+      P ESSLLN+E  DAG+DLD    ++ E +     +QRYPWEGS+RDY Y+ELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVM +LLAELGTSGSLDG QRLVVKGRF
Sbjct:    1 MADEIN-EIREEQEQLAPFDPSKKKKKKKVVIQEPVEDLAESSQTEKSDSLPVNDGLESSFTGMKKKKKKPTESSLLNNESVDAGEDLDEIANDEQEGEEGIVLQQRYPWEGSERDYIYDELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMQYLLAELGTSGSLDGQQRLVVKGRF 203          
BLAST of FC923513 vs. ExPASy Swiss-Prot
Match: IF2B_RABIT (Eukaryotic translation initiation factor 2 subunit 2 OS=Oryctolagus cuniculus GN=EIF2S2 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.719e-34
Identity = 75/128 (58.59%), Postives = 95/128 (74.22%), Query Frame = 3
Query:  363 DEIGDAGDDLDGHVGEDDEADGSGGPRQRYP-WEGSDRDYEYEELLGRVFNILRENNPEL-AGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDG-QRLVVKGRF 737
            DEI +  + L+    + D  DG     Q  P W GS+RDY YEELL RVFNI+RE NP++ AG++R+ VM+PPQV+R GTKKT FVNF D+CK +HRQP H++ FLLAELGTSGS+DG  +LV+KGRF
Sbjct:  137 DEILEKDEALEDEDSKKD--DGISFSNQTGPAWAGSERDYTYEELLNRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFLLAELGTSGSIDGNNQLVIKGRF 262          
BLAST of FC923513 vs. ExPASy Swiss-Prot
Match: IF2B_PONAB (Eukaryotic translation initiation factor 2 subunit 2 OS=Pongo abelii GN=EIF2S2 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.719e-34
Identity = 75/128 (58.59%), Postives = 95/128 (74.22%), Query Frame = 3
Query:  363 DEIGDAGDDLDGHVGEDDEADGSGGPRQRYP-WEGSDRDYEYEELLGRVFNILRENNPEL-AGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDG-QRLVVKGRF 737
            DEI +  + L+    + D  DG     Q  P W GS+RDY YEELL RVFNI+RE NP++ AG++R+ VM+PPQV+R GTKKT FVNF D+CK +HRQP H++ FLLAELGTSGS+DG  +LV+KGRF
Sbjct:  137 DEILEKDEALEDEDNKKD--DGISFSNQTGPAWAGSERDYTYEELLNRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFLLAELGTSGSIDGNNQLVIKGRF 262          
BLAST of FC923513 vs. ExPASy Swiss-Prot
Match: IF2B_HUMAN (Eukaryotic translation initiation factor 2 subunit 2 OS=Homo sapiens GN=EIF2S2 PE=1 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 7.719e-34
Identity = 75/128 (58.59%), Postives = 95/128 (74.22%), Query Frame = 3
Query:  363 DEIGDAGDDLDGHVGEDDEADGSGGPRQRYP-WEGSDRDYEYEELLGRVFNILRENNPEL-AGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDG-QRLVVKGRF 737
            DEI +  + L+    + D  DG     Q  P W GS+RDY YEELL RVFNI+RE NP++ AG++R+ VM+PPQV+R GTKKT FVNF D+CK +HRQP H++ FLLAELGTSGS+DG  +LV+KGRF
Sbjct:  137 DEILEKDEALEDEDNKKD--DGISFSNQTGPAWAGSERDYTYEELLNRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFLLAELGTSGSIDGNNQLVIKGRF 262          
BLAST of FC923513 vs. ExPASy Swiss-Prot
Match: IF2B_MOUSE (Eukaryotic translation initiation factor 2 subunit 2 OS=Mus musculus GN=Eif2s2 PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.008e-33
Identity = 73/127 (57.48%), Postives = 94/127 (74.02%), Query Frame = 3
Query:  363 DEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYEELLGRVFNILRENNPEL-AGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDG-QRLVVKGRF 737
            DEI +  + L+    ED + D       +  W GS+RDY YEELL RVFNI+RE NP++ AG++R+ VM+PPQV+R GTKKT FVNF D+CK +HRQP H++ FLLAELGTSGS+DG  +LV+KGRF
Sbjct:  137 DEILEKDEALED---EDSKKDDGISFSSQTAWAGSERDYTYEELLNRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFLLAELGTSGSIDGNNQLVIKGRF 260          
BLAST of FC923513 vs. ExPASy Swiss-Prot
Match: IF2B_BOVIN (Eukaryotic translation initiation factor 2 subunit 2 OS=Bos taurus GN=EIF2S2 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.008e-33
Identity = 74/128 (57.81%), Postives = 95/128 (74.22%), Query Frame = 3
Query:  363 DEIGDAGDDLDGHVGEDDEADGSGGPRQRYP-WEGSDRDYEYEELLGRVFNILRENNPEL-AGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDG-QRLVVKGRF 737
            DE+ +  + L+    + D  DG     Q  P W GS+RDY YEELL RVFNI+RE NP++ AG++R+ VM+PPQV+R GTKKT FVNF D+CK +HRQP H++ FLLAELGTSGS+DG  +LV+KGRF
Sbjct:  137 DEVLEKDEALEDEDSKKD--DGISFSNQTGPAWAGSERDYTYEELLNRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFLLAELGTSGSIDGNNQLVIKGRF 262          
BLAST of FC923513 vs. ExPASy Swiss-Prot
Match: IF2BL_HUMAN (Eukaryotic translation initiation factor 2 subunit 2-like protein OS=Homo sapiens PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.933e-33
Identity = 70/113 (61.95%), Postives = 89/113 (78.76%), Query Frame = 3
Query:  408 EDDEADGSGGPRQRYP-WEGSDRDYEYEELLGRVFNILRENNPEL-AGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDG-QRLVVKGRF 737
            ++ + DG     Q  P W GS+RDY YEELL RVFNI+RE NP++ AG++R+ VM+PPQV+R GTKKT FVNF D+CK +HRQP H++ FLLAELGTSGS+DG  +LV+KGRF
Sbjct:  144 DNKKDDGISFSNQTGPAWAGSERDYTYEELLNRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFLLAELGTSGSIDGNNQLVIKGRF 256          
BLAST of FC923513 vs. ExPASy Swiss-Prot
Match: IF2B_DROME (Eukaryotic translation initiation factor 2 subunit 2 OS=Drosophila melanogaster GN=eIF-2beta PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.586e-31
Identity = 71/129 (55.04%), Postives = 90/129 (69.77%), Query Frame = 3
Query:  357 LNDEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYEELLGRVFNILRENNPELAGDRR-RTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDG-QRLVVKGRF 737
            L++   D  DD      E+DE + S        W GSDRDY Y+ELL RVF I+ + NP++A  R+ + VMRPPQVLR GTKKT F NFMD+ KT+HR P H++ FLLAELGTSGS+DG Q+L++KGRF
Sbjct:  120 LDELFADQADDDKSEDKENDEDNSS-------TWFGSDRDYTYDELLKRVFEIILDKNPDMAAGRKPKFVMRPPQVLRVGTKKTSFANFMDIAKTLHRLPKHLLDFLLAELGTSGSMDGNQQLIIKGRF 241          
The following BLAST results are available for this feature:
BLAST of FC923513 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
IF2B_MALDO6.901e-7571.08Eukaryotic translation initiation factor 2 subunit... [more]
IF2B_WHEAT6.684e-7068.29Eukaryotic translation initiation factor 2 subunit... [more]
IF2B_ARATH4.790e-6865.69Eukaryotic translation initiation factor 2 subunit... [more]
IF2B_RABIT7.719e-3458.59Eukaryotic translation initiation factor 2 subunit... [more]
IF2B_PONAB7.719e-3458.59Eukaryotic translation initiation factor 2 subunit... [more]
IF2B_HUMAN7.719e-3458.59Eukaryotic translation initiation factor 2 subunit... [more]
IF2B_MOUSE1.008e-3357.48Eukaryotic translation initiation factor 2 subunit... [more]
IF2B_BOVIN1.008e-3357.81Eukaryotic translation initiation factor 2 subunit... [more]
IF2BL_HUMAN2.933e-3361.95Eukaryotic translation initiation factor 2 subunit... [more]
IF2B_DROME3.586e-3155.04Eukaryotic translation initiation factor 2 subunit... [more]

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Properties
Property NameValue
Genbank descriptionC31705H04EF StrClemenN Citrus clementina cDNA clone C31705H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923513 ID=FC923513; Name=FC923513; organism=Citrus clementina; type=EST; length=738bp
GATTCGTTATACAGACAGCAAGGATCGAAGAAAAGATAACTCTGTTAAGC
CTGTATTCGAATTCATTTCTTTAGCCGCAGGCCGTCAGCGACGGAAGAGA
AGATCTCAGTTTCGATTCTAGAAACTCGACTATGACGGACGAAAATCAAG
TAGATGTGAAGGACGAGGTGGCAGAACTTGCCCCCTTCGATCCTACTAAA
AAGAAGAAGAAGAAGAAGGTTGTAATACAGGATCCTTCAGATGATTCTGT
GGACAAACTGGCCGAGATAACTGAAACTTTATCAGTCTCTGAGGGGCTTG
AAAGTACTTTTACTGGTTTGAAAAAGAAGAAGAAGAAACCAGTAGAAAGC
AGTCTATTGAACGATGAGATTGGGGATGCAGGAGACGATTTGGATGGTCA
CGTGGGTGAGGATGATGAAGCTGATGGAAGTGGTGGTCCACGGCAGCGTT
ATCCATGGGAAGGGAGTGATCGCGACTATGAATATGAGGAGCTTCTTGGT
AGGGTCTTTAACATCCTCCGAGAGAATAATCCTGAACTTGCAGGAGATAG
GCGTAGAACAGTCATGAGACCTCCACAAGTTCTTCGTGAAGGAACAAAGA
AAACTGTTTTTGTCAATTTCATGGATCTCTGCAAGACCATGCATCGGCAG
CCAGATCATGTCATGACATTTTTGCTTGCTGAACTGGGGACAAGTGGGTC
ACTGGACGGACAAAGACTGGTCGTGAAGGGCCGATTTG
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