FC923524

Overview
NameFC923524
Unique NameFC923524
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length495
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10204 contig Ccv1_Contig10204:81..575. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923524 vs. ExPASy Swiss-Prot
Match: REFP2_MOUSE (RNA and export factor-binding protein 2 OS=Mus musculus GN=Refbp2 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.603e-23
Identity = 63/146 (43.15%), Postives = 81/146 (55.48%), Query Frame = 1
Query:   58 MSSALDMSLDDIIKNIKKXXXXXXXXXXXXXXXXXXXXXXNRGANRVAPYTAAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTADVVYSRRADAVAAVKR 495
            M+  +DMSLDDIIK  +                         G NR APY+  K     WQHD+F            G    +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++ YDRSGRS GTADV + RRADA+ A+K+
Sbjct:    1 MADKMDMSLDDIIKLNRNQRRVNRGGGPRRNRPAIARG----GRNRPAPYSRPKPLPDKWQHDLFDSG--------CGGGEGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQ 134          
BLAST of FC923524 vs. ExPASy Swiss-Prot
Match: THOC4_TAEGU (THO complex subunit 4 OS=Taeniopygia guttata GN=THOC4 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 6.092e-23
Identity = 55/104 (52.88%), Postives = 72/104 (69.23%), Query Frame = 1
Query:  184 GANRVAPYTAAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTADVVYSRRADAVAAVKR 495
            G NR APY+  K     WQHD+F    S F     G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTADV + R+ADA+ A+K+
Sbjct:   67 GRNRPAPYSRPKQLPEKWQHDLFD---SGF-----GAGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQ 162          
BLAST of FC923524 vs. ExPASy Swiss-Prot
Match: THOC4_MOUSE (THO complex subunit 4 OS=Mus musculus GN=Thoc4 PE=1 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 7.957e-23
Identity = 55/104 (52.88%), Postives = 72/104 (69.23%), Query Frame = 1
Query:  184 GANRVAPYTAAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTADVVYSRRADAVAAVKR 495
            G NR APY+  K     WQHD+F    S F     G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTADV + R+ADA+ A+K+
Sbjct:   69 GRNRPAPYSRPKQLPDKWQHDLFD---SGF-----GGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQ 164          
BLAST of FC923524 vs. ExPASy Swiss-Prot
Match: THOC4_HUMAN (THO complex subunit 4 OS=Homo sapiens GN=THOC4 PE=1 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 7.957e-23
Identity = 55/104 (52.88%), Postives = 72/104 (69.23%), Query Frame = 1
Query:  184 GANRVAPYTAAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTADVVYSRRADAVAAVKR 495
            G NR APY+  K     WQHD+F    S F     G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTADV + R+ADA+ A+K+
Sbjct:   70 GRNRPAPYSRPKQLPDKWQHDLFD---SGF-----GGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQ 165          
BLAST of FC923524 vs. ExPASy Swiss-Prot
Match: THOC4_BOVIN (THO complex subunit 4 OS=Bos taurus GN=THOC4 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 7.957e-23
Identity = 55/104 (52.88%), Postives = 72/104 (69.23%), Query Frame = 1
Query:  184 GANRVAPYTAAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTADVVYSRRADAVAAVKR 495
            G NR APY+  K     WQHD+F    S F     G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTADV + R+ADA+ A+K+
Sbjct:   70 GRNRPAPYSRPKQLPDKWQHDLFD---SGF-----GGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQ 165          
BLAST of FC923524 vs. ExPASy Swiss-Prot
Match: THOC4_XENTR (THO complex subunit 4 OS=Xenopus tropicalis GN=thoc4 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.039e-22
Identity = 55/104 (52.88%), Postives = 72/104 (69.23%), Query Frame = 1
Query:  184 GANRVAPYTAAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTADVVYSRRADAVAAVKR 495
            G NR APY+  K     WQHD+F    S F     G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTADV + R+ADA+ A+K+
Sbjct:   73 GRNRPAPYSRPKQLPDKWQHDLFD---SGF-----GTGAGMETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQ 168          
BLAST of FC923524 vs. ExPASy Swiss-Prot
Match: THO4B_XENLA (THO complex subunit 4-B OS=Xenopus laevis GN=thoc4-B PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.315e-22
Identity = 54/104 (51.92%), Postives = 71/104 (68.27%), Query Frame = 1
Query:  184 GANRVAPYTAAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTADVVYSRRADAVAAVKR 495
            G NR  PY+  K     WQHD+F    S F     G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTADV + R+ADA+ A+K+
Sbjct:   69 GRNRPTPYSRPKQLPDKWQHDLFD---SGF-----GTGAGMETGGKLLVSNLDFGVSDADIQELFAEFGSLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQ 164          
BLAST of FC923524 vs. ExPASy Swiss-Prot
Match: THO4A_XENLA (THO complex subunit 4-A OS=Xenopus laevis GN=thoc4-A PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.024e-22
Identity = 54/104 (51.92%), Postives = 71/104 (68.27%), Query Frame = 1
Query:  184 GANRVAPYTAAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTADVVYSRRADAVAAVKR 495
            G NR  PY+  K     WQHD+F    S F     G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTADV + R+ADA+ A+K+
Sbjct:   70 GRNRPTPYSRPKQLPDKWQHDLFD---SGF-----GAGAGMETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQ 165          
The following BLAST results are available for this feature:
BLAST of FC923524 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
REFP2_MOUSE1.603e-2343.15RNA and export factor-binding protein 2 OS=Mus mus... [more]
THOC4_TAEGU6.092e-2352.88THO complex subunit 4 OS=Taeniopygia guttata GN=TH... [more]
THOC4_MOUSE7.957e-2352.88THO complex subunit 4 OS=Mus musculus GN=Thoc4 PE=... [more]
THOC4_HUMAN7.957e-2352.88THO complex subunit 4 OS=Homo sapiens GN=THOC4 PE=... [more]
THOC4_BOVIN7.957e-2352.88THO complex subunit 4 OS=Bos taurus GN=THOC4 PE=2 ... [more]
THOC4_XENTR1.039e-2252.88THO complex subunit 4 OS=Xenopus tropicalis GN=tho... [more]
THO4B_XENLA2.315e-2251.92THO complex subunit 4-B OS=Xenopus laevis GN=thoc4... [more]
THO4A_XENLA3.024e-2251.92THO complex subunit 4-A OS=Xenopus laevis GN=thoc4... [more]
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Properties
Property NameValue
Genbank descriptionC31706A04EF StrClemenN Citrus clementina cDNA clone C31706A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923524 ID=FC923524; Name=FC923524; organism=Citrus clementina; type=EST; length=495bp
TACCTCTCTCTTATTACGATTTGATCTTTGATTTTCTATTTTTTGTGATA
GGAAAAAATGTCAAGCGCTTTAGATATGTCTCTTGACGATATCATCAAGA
ACATCAAAAAGTCTGGATCTGGCAACTTCCGGGGCCGGGGTCGAGGATCC
GGACCCGGACCTGCTCGTCGCATCCCCAATCGTGGTGCAAACCGTGTGGC
GCCGTATACCGCCGCCAAAGCGCCGGAGACGACGTGGCAGCACGATATGT
TTGCAGATCAGGTGAGTGCTTTCCCGGTACAGCAAGCGGGGCGGGCTTCA
GCTATAGAGACTGGAACGAAGCTGTACATATCAAATCTGGATTACGGTGT
CTCTAATGAAGACATCAAGGAACTGTTTTCTGAAGTTGGTGACTTGAAGC
GCTACTCAATCCATTATGATAGAAGTGGGAGATCAAAGGGAACGGCAGAC
GTTGTCTATTCACGACGAGCAGATGCTGTGGCTGCAGTCAAGAGA
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