FC923524
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC923524 vs. ExPASy Swiss-Prot
Match: REFP2_MOUSE (RNA and export factor-binding protein 2 OS=Mus musculus GN=Refbp2 PE=1 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 1.603e-23 Identity = 63/146 (43.15%), Postives = 81/146 (55.48%), Query Frame = 1 Query: 58 MSSALDMSLDDIIKNIKKXXXXXXXXXXXXXXXXXXXXXXNRGANRVAPYTAAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTADVVYSRRADAVAAVKR 495 M+ +DMSLDDIIK + G NR APY+ K WQHD+F G +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++ YDRSGRS GTADV + RRADA+ A+K+ Sbjct: 1 MADKMDMSLDDIIKLNRNQRRVNRGGGPRRNRPAIARG----GRNRPAPYSRPKPLPDKWQHDLFDSG--------CGGGEGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQ 134
BLAST of FC923524 vs. ExPASy Swiss-Prot
Match: THOC4_TAEGU (THO complex subunit 4 OS=Taeniopygia guttata GN=THOC4 PE=2 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 6.092e-23 Identity = 55/104 (52.88%), Postives = 72/104 (69.23%), Query Frame = 1 Query: 184 GANRVAPYTAAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTADVVYSRRADAVAAVKR 495 G NR APY+ K WQHD+F S F G + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTADV + R+ADA+ A+K+ Sbjct: 67 GRNRPAPYSRPKQLPEKWQHDLFD---SGF-----GAGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQ 162
BLAST of FC923524 vs. ExPASy Swiss-Prot
Match: THOC4_MOUSE (THO complex subunit 4 OS=Mus musculus GN=Thoc4 PE=1 SV=3) HSP 1 Score: 106.301 bits (264), Expect = 7.957e-23 Identity = 55/104 (52.88%), Postives = 72/104 (69.23%), Query Frame = 1 Query: 184 GANRVAPYTAAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTADVVYSRRADAVAAVKR 495 G NR APY+ K WQHD+F S F G + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTADV + R+ADA+ A+K+ Sbjct: 69 GRNRPAPYSRPKQLPDKWQHDLFD---SGF-----GGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQ 164
BLAST of FC923524 vs. ExPASy Swiss-Prot
Match: THOC4_HUMAN (THO complex subunit 4 OS=Homo sapiens GN=THOC4 PE=1 SV=3) HSP 1 Score: 106.301 bits (264), Expect = 7.957e-23 Identity = 55/104 (52.88%), Postives = 72/104 (69.23%), Query Frame = 1 Query: 184 GANRVAPYTAAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTADVVYSRRADAVAAVKR 495 G NR APY+ K WQHD+F S F G + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTADV + R+ADA+ A+K+ Sbjct: 70 GRNRPAPYSRPKQLPDKWQHDLFD---SGF-----GGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQ 165
BLAST of FC923524 vs. ExPASy Swiss-Prot
Match: THOC4_BOVIN (THO complex subunit 4 OS=Bos taurus GN=THOC4 PE=2 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 7.957e-23 Identity = 55/104 (52.88%), Postives = 72/104 (69.23%), Query Frame = 1 Query: 184 GANRVAPYTAAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTADVVYSRRADAVAAVKR 495 G NR APY+ K WQHD+F S F G + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTADV + R+ADA+ A+K+ Sbjct: 70 GRNRPAPYSRPKQLPDKWQHDLFD---SGF-----GGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQ 165
BLAST of FC923524 vs. ExPASy Swiss-Prot
Match: THOC4_XENTR (THO complex subunit 4 OS=Xenopus tropicalis GN=thoc4 PE=2 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 1.039e-22 Identity = 55/104 (52.88%), Postives = 72/104 (69.23%), Query Frame = 1 Query: 184 GANRVAPYTAAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTADVVYSRRADAVAAVKR 495 G NR APY+ K WQHD+F S F G + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTADV + R+ADA+ A+K+ Sbjct: 73 GRNRPAPYSRPKQLPDKWQHDLFD---SGF-----GTGAGMETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQ 168
BLAST of FC923524 vs. ExPASy Swiss-Prot
Match: THO4B_XENLA (THO complex subunit 4-B OS=Xenopus laevis GN=thoc4-B PE=2 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 2.315e-22 Identity = 54/104 (51.92%), Postives = 71/104 (68.27%), Query Frame = 1 Query: 184 GANRVAPYTAAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTADVVYSRRADAVAAVKR 495 G NR PY+ K WQHD+F S F G + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTADV + R+ADA+ A+K+ Sbjct: 69 GRNRPTPYSRPKQLPDKWQHDLFD---SGF-----GTGAGMETGGKLLVSNLDFGVSDADIQELFAEFGSLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQ 164
BLAST of FC923524 vs. ExPASy Swiss-Prot
Match: THO4A_XENLA (THO complex subunit 4-A OS=Xenopus laevis GN=thoc4-A PE=2 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 3.024e-22 Identity = 54/104 (51.92%), Postives = 71/104 (68.27%), Query Frame = 1 Query: 184 GANRVAPYTAAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTADVVYSRRADAVAAVKR 495 G NR PY+ K WQHD+F S F G + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTADV + R+ADA+ A+K+ Sbjct: 70 GRNRPTPYSRPKQLPDKWQHDLFD---SGF-----GAGAGMETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQ 165 The following BLAST results are available for this feature:
BLAST of FC923524 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC923524 ID=FC923524; Name=FC923524; organism=Citrus clementina; type=EST; length=495bpback to top |