FC923532

Overview
NameFC923532
Unique NameFC923532
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC923532 vs. ExPASy Swiss-Prot
Match: FUK_HUMAN (L-fucose kinase OS=Homo sapiens GN=FUK PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.552e-23
Identity = 72/237 (30.38%), Postives = 112/237 (47.26%), Query Frame = 2 
Query:   26 VKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLIS-----DDAENQLHIEDLTPIATPFDHNDPFRLVKSALLVTGVIH--------EKLIESMG--LQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMXXXXXXXXXXXXLYPGIKFTSSFPGIPLRLQVIPXXXXXXXXXXXXXXXXVVFTGQVRLAHQVLQ 691
            V  E P R+DF+GGWSDTPP + E  G VL +A+ ++   PIG          + ++     D+   ++    L  +      + P  L+K+A +  G++H        E+L+ + G   ++ TW+ +P GSGLGTSSILA   + AL +        E +   VL LEQ++            L PGIK   S   +PL+++V                  +V+TG+ RLA  +LQ
Sbjct:  707 VVAECPARVDFSGGWSDTPPLAYELGGAVLGLAVRVDGRRPIGARARRIPEPELWLAVGPRQDEMTVKIVCRCLADLRDYCQPHAPGALLKAAFICAGIVHVHSELQLSEQLLRTFGGGFELHTWSELPHGSGLGTSSILAGTALAALQRAAGRVVGTEALIHAVLHLEQVLTTGGGWQDQVGGLMPGIKVGRSRAQLPLKVEVEEVTVPEGFVQKLNDHLLLVYTGKTRLARNLLQ 943
The following BLAST results are available for this feature:
BLAST of FC923532 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
FUK_HUMAN1.552e-2330.38L-fucose kinase OS=Homo sapiens GN=FUK PE=2 SV=2[more]
back to top
Properties
Property NameValue
Genbank descriptionC31706B05EF StrClemenN Citrus clementina cDNA clone C31706B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923532 ID=FC923532; Name=FC923532; organism=Citrus clementina; type=EST; length=722bp
GGATCATCCTTTCCAACCAAGAACTGTAAAGGTTGAATTACCAGTTCGGA
TAGATTTTGCTGGGGGTTGGAGTGATACTCCTCCTTGGAGTTTGGAGCGT
GCTGGTTGTGTTCTCAATGTGGCAATAAGTTTGGAAAGTTCTCTTCCGAT
TGGCACCATCATAGAGACAACAAAAATGAGTGGCGTATTGATTAGTGATG
ATGCTGAAAACCAGTTACATATTGAAGACCTCACCCCCATTGCTACTCCC
TTCGACCATAATGATCCATTTCGGCTCGTCAAATCTGCATTGCTAGTAAC
TGGCGTTATTCATGAAAAACTTATTGAATCCATGGGCTTGCAGATCAGGA
CGTGGGCAAATGTCCCCCGTGGTAGTGGCTTAGGAACTTCTAGCATCTTA
GCAGCTGCTGTTGTAAAAGCTCTTCTGCAGATAACCGATGGAGATCAAAG
TAATGAAAATGTTGCGCGGCTTGTTTTGTTGTTAGAGCAGCTCATGGGCA
CAGGTGGTGGCTGGCAAGATCAAATTGGAGGTTTGTACCCAGGCATTAAG
TTCACTTCAAGTTTCCCTGGAATACCATTGCGGCTCCAGGTGATCCCCCT
ACTGGCTTCTCTTCAGCTGATTCTGGAGTTGCAGCAAAGATTGCTTGTGG
TATTTACTGGTCAAGTTCGACTTGCACATCAAGTGCTACAAAGGTGGTGA
CTCGNTATCTTCAAGGGATAAC
back to top