FC923541

Overview
NameFC923541
Unique NameFC923541
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length357
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14492 contig Ccv1_Contig14492:1..357. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923541 vs. ExPASy Swiss-Prot
Match: SODF_NICPL (Superoxide dismutase [Fe], chloroplastic (Fragment) OS=Nicotiana plumbaginifolia GN=SODB PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.235e-30
Identity = 59/91 (64.84%), Postives = 67/91 (73.63%), Query Frame = 1
Query:    4 GTELDGMSLEDVIIVSYNKGDMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLKEFKSAAATQFGSGWAWLAYKP 276
            GTELDG +LED+I+V+YNKG  LP FNNAAQAWNH+FFW                  I RDFGS+D F+KEFK+AAATQFGSGWAWLAYKP
Sbjct:   44 GTELDGKTLEDIILVTYNKGAPLPAFNNAAQAWNHQFFWESMKPNGGGEPSGELLELINRDFGSYDAFVKEFKAAAATQFGSGWAWLAYKP 134          
BLAST of FC923541 vs. ExPASy Swiss-Prot
Match: SODF_SOYBN (Superoxide dismutase [Fe], chloroplastic OS=Glycine max GN=SODB PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 9.449e-30
Identity = 59/91 (64.84%), Postives = 67/91 (73.63%), Query Frame = 1
Query:    1 VGTELDGMSLEDVIIVSYNKGDMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLKEFKSAAATQFGSGWAWLAYK 273
            VGTELDG SLE++I+ SYNKGD+LP FNNAAQ WNH+FFW                  IERDFGSF +FL EFK+AAATQFGSGWAWLAY+
Sbjct:   68 VGTELDGKSLEEIIVTSYNKGDILPAFNNAAQVWNHDFFWECMKPGGGGKPSGELLELIERDFGSFVKFLDEFKAAAATQFGSGWAWLAYR 158          
BLAST of FC923541 vs. ExPASy Swiss-Prot
Match: SODF_ARATH (Superoxide dismutase [Fe], chloroplastic OS=Arabidopsis thaliana GN=SODB PE=1 SV=4)

HSP 1 Score: 111.694 bits (278), Expect = 1.195e-24
Identity = 50/90 (55.56%), Postives = 62/90 (68.89%), Query Frame = 1
Query:    1 VGTELDGMSLEDVIIVSYNKGDMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLKEFKSAAATQFGSGWAWLAY 270
            +GTEL+G  LE +I  +YN GD+LP FNNAAQAWNHEFFW                  +ERDF S+++F +EF +AAATQFG+GWAWLAY
Sbjct:   52 LGTELEGKPLEHIIHSTYNNGDLLPAFNNAAQAWNHEFFWESMKPGGGGKPSGELLALLERDFTSYEKFYEEFNAAAATQFGAGWAWLAY 141          
BLAST of FC923541 vs. ExPASy Swiss-Prot
Match: SODF_ANASP (Superoxide dismutase [Fe] OS=Anabaena sp. (strain PCC 7120) GN=sodB PE=3 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 4.864e-18
Identity = 43/87 (49.43%), Postives = 51/87 (58.62%), Query Frame = 1
Query:    4 GTELDGMSLEDVIIVSYNKGDMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLKEFKSAAATQFGSGWAWL 264
            GTEL   SLE+VI +++        FNNAAQ WNH FFW                  I +DFGSFD+  +EF +AAATQFGSGWAWL
Sbjct:   46 GTELADKSLEEVIQIAFKDASKAGIFNNAAQVWNHTFFWNSLKPAGGGAPTGEFAAKINQDFGSFDKLKEEFSNAAATQFGSGWAWL 132          
BLAST of FC923541 vs. ExPASy Swiss-Prot
Match: SODF_SYNY3 (Superoxide dismutase [Fe] OS=Synechocystis sp. (strain PCC 6803) GN=sodB PE=1 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 8.297e-18
Identity = 43/87 (49.43%), Postives = 48/87 (55.17%), Query Frame = 1
Query:    4 GTELDGMSLEDVIIVSYNKGDMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLKEFKSAAATQFGSGWAWL 264
            GT+LD  S+EDVI            FNNAAQAWNH F+W                  I  DFGSFD F++ FK A ATQFGSGWAWL
Sbjct:   45 GTDLDNQSIEDVIKAVAGDASKAGIFNNAAQAWNHSFYWNCMKPGGGGQPSGALADKINADFGSFDAFVEAFKQAGATQFGSGWAWL 131          
BLAST of FC923541 vs. ExPASy Swiss-Prot
Match: SODF_PLEBO (Superoxide dismutase [Fe] OS=Plectonema boryanum GN=sodB PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.084e-17
Identity = 42/87 (48.28%), Postives = 51/87 (58.62%), Query Frame = 1
Query:    4 GTELDGMSLEDVIIVSYNKGDMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLKEFKSAAATQFGSGWAWL 264
            GT ++ +SLEDVI  S+     +  FNNAAQ WNH FFW                  I+  FGS D+F +EF +AAATQFGSGWAWL
Sbjct:   46 GTPMESLSLEDVIKQSFGDSSKVGVFNNAAQVWNHTFFWNCLKAGGGGAPTGELAAKIDAAFGSLDKFKEEFSNAAATQFGSGWAWL 132          
BLAST of FC923541 vs. ExPASy Swiss-Prot
Match: SODF_SYNE7 (Superoxide dismutase [Fe] OS=Synechococcus elongatus (strain PCC 7942) GN=sodB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.174e-17
Identity = 42/86 (48.84%), Postives = 47/86 (54.65%), Query Frame = 1
Query:    7 TELDGMSLEDVIIVSYNKGDMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLKEFKSAAATQFGSGWAWL 264
            T+LDG  +E VI            FNNAAQAWNH F+W                  I  DFGSF+ F+ EFK AAATQFGSGWAWL
Sbjct:   46 TDLDGQPIEAVIKAIAGDASKAGLFNNAAQAWNHSFYWNSIKPNGGGAPTGALADKIAADFGSFENFVTEFKQAAATQFGSGWAWL 131          
BLAST of FC923541 vs. ExPASy Swiss-Prot
Match: SODF_RICBR (Superoxide dismutase [Mn/Fe] OS=Rickettsia bellii (strain RML369-C) GN=sodB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.263e-14
Identity = 38/87 (43.68%), Postives = 48/87 (55.17%), Query Frame = 1
Query:   10 ELDGMSLEDVIIVSYNKGDMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLKEFKSAAATQFGSGWAWLAY 270
            EL   +LE++I  S ++   +  FNNAAQ WNH FFW                  I  DFGSF+ F ++FK+ A  QFGSGWAWL Y
Sbjct:   59 ELQKKNLEEIIDWS-SQNQNIAIFNNAAQVWNHTFFWHSIKPNGGGKPSGKILKQINEDFGSFEEFCEQFKAEATGQFGSGWAWLVY 144          
BLAST of FC923541 vs. ExPASy Swiss-Prot
Match: SODF_LEGPH (Superoxide dismutase [Fe] OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=sodB PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.269e-14
Identity = 38/87 (43.68%), Postives = 49/87 (56.32%), Query Frame = 1
Query:    4 GTELDGMSLEDVIIVSYNKGDMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLKEFKSAAATQFGSGWAWL 264
            GTE + M+LE++I+ +  KG +   FNNAAQ WNH F+W                  I + FGSF  F ++F   AAT FGSGWAWL
Sbjct:   45 GTEFESMTLEEIIMKA--KGGI---FNNAAQVWNHTFYWHSMSPNGGGEPKGRLAEAINKSFGSFAAFKEQFSQTAATTFGSGWAWL 126          
BLAST of FC923541 vs. ExPASy Swiss-Prot
Match: SODF_RICFE (Superoxide dismutase [Mn/Fe] OS=Rickettsia felis GN=sodB PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.240e-13
Identity = 38/87 (43.68%), Postives = 46/87 (52.87%), Query Frame = 1
Query:   10 ELDGMSLEDVIIVSYNKGDMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLKEFKSAAATQFGSGWAWLAY 270
            EL    LE++I  S ++      FNNAAQ WNH FFW                  I +DFGSF+ F ++FK  A  QFGSGWAWL Y
Sbjct:   59 ELQKKDLEEIIEWS-SQNSNAAIFNNAAQIWNHSFFWHSIKPQGGGKPSGKILEQINKDFGSFEGFCEQFKQEAVGQFGSGWAWLVY 144          
The following BLAST results are available for this feature:
BLAST of FC923541 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
SODF_NICPL7.235e-3064.84Superoxide dismutase [Fe], chloroplastic (Fragment... [more]
SODF_SOYBN9.449e-3064.84Superoxide dismutase [Fe], chloroplastic OS=Glycin... [more]
SODF_ARATH1.195e-2455.56Superoxide dismutase [Fe], chloroplastic OS=Arabid... [more]
SODF_ANASP4.864e-1849.43Superoxide dismutase [Fe] OS=Anabaena sp. (strain ... [more]
SODF_SYNY38.297e-1849.43Superoxide dismutase [Fe] OS=Synechocystis sp. (st... [more]
SODF_PLEBO1.084e-1748.28Superoxide dismutase [Fe] OS=Plectonema boryanum G... [more]
SODF_SYNE79.174e-1748.84Superoxide dismutase [Fe] OS=Synechococcus elongat... [more]
SODF_RICBR3.263e-1443.68Superoxide dismutase [Mn/Fe] OS=Rickettsia bellii ... [more]
SODF_LEGPH7.269e-1443.68Superoxide dismutase [Fe] OS=Legionella pneumophil... [more]
SODF_RICFE1.240e-1343.68Superoxide dismutase [Mn/Fe] OS=Rickettsia felis G... [more]

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Properties
Property NameValue
Genbank descriptionC31706C04EF StrClemenN Citrus clementina cDNA clone C31706C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923541 ID=FC923541; Name=FC923541; organism=Citrus clementina; type=EST; length=357bp
GTTGGAACTGAGCTAGATGGAATGTCATTGGAAGACGTTATCATTGTTTC
ATATAACAAGGGCGACATGCTTCCTCCTTTCAACAATGCTGCACAGGCAT
GGAACCACGAGTTCTTTTGGGAATCCATGAAACCAGGTGGTGGTGGAAAG
CCATCTGGTGAACTTCTAGAACTGATTGAAAGGGATTTTGGTTCTTTTGA
TAGATTTCTCAAGGAATTCAAGTCGGCTGCAGCCACCCAGTTTGGTTCTG
GTTGGGCTTGGCTGGCATACAAGCCAATAGACTTAATGTGGATAATGCCA
TGAATCCTTTTCCATCAGAGAAGGACAAGAAGCTTGTAGTGGTGAAGAGT
CCCATGC
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