FC923544

Overview
NameFC923544
Unique NameFC923544
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length756
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10851 contig Ccv1_Contig10851:25..779. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC923544 vs. ExPASy Swiss-Prot
Match: PSMF1_ARATH (Probable proteasome inhibitor OS=Arabidopsis thaliana GN=At3g53970 PE=2 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 5.932e-61
Identity = 124/223 (55.61%), Postives = 160/223 (71.75%), Query Frame = 3 
Query:   75 MPNEKSVMAVIRAARPTFRNDFDKIAFVVHASFLASGHVLTATGPAADTEFTSPSSSTDEVGIDHWNELADDNYAFLFINPEKGSKKVLVKCLVMNSKLLVDALAEGASEPVHLEINVADYVAE-NGGNYSDKFKNLEKLVTDLDKDIISKLYGSPKTASSERCEGSRPIVTDPAFGFEHD---GPQSYVTGIPVPPINPSRG-SDLFPGPGAGMYPRRGGFG 728
            M N ++VMA+IR ARP FRN+ DK+AF +H+SF+ASG++LTATG  A  +    SSS ++VGI+ WNE  +  YAF++ NP+KGSKK+LVKCL M+ KLLVDA+A+G +EP HLEI V DY  E N G+YS +FKNL+KLVTDL  +II KL G PK  +S R + S     +P +  +     GPQ + +G+ VPPI  + G SDLFPGPGAGMYP RGGFG
Sbjct:    1 MANSQTVMAMIRLARPPFRNNHDKVAFAIHSSFVASGYILTATGRPAFADEALSSSSQNDVGIEGWNEF-EGEYAFVYANPKKGSKKILVKCLAMDDKLLVDAIADGGAEPAHLEIKVGDYAEESNEGDYSAQFKNLDKLVTDLQSEIIDKLDGKPKPVAS-RAQSSSETNEEPRYYDDTPNPLGPQIHPSGVVVPPIPGNGGYSDLFPGPGAGMYPGRGGFG 221
The following BLAST results are available for this feature:
BLAST of FC923544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PSMF1_ARATH5.932e-6155.61Probable proteasome inhibitor OS=Arabidopsis thali... [more]
back to top
Properties
Property NameValue
Genbank descriptionC31706C08EF StrClemenN Citrus clementina cDNA clone C31706C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923544 ID=FC923544; Name=FC923544; organism=Citrus clementina; type=EST; length=756bp
GGCAGACATTCGAAACAAGACCTCGCTCTCTCATAAACTCTAAAAACAAA
GACAGGAAAAAAATTAAAAAAAAAATGCCGAACGAGAAATCAGTGATGGC
CGTGATAAGAGCGGCAAGACCTACCTTTCGAAACGACTTCGATAAAATTG
CATTTGTCGTTCACGCCTCTTTCCTTGCCAGTGGACACGTGTTAACCGCC
ACTGGACCTGCCGCGGACACCGAGTTCACCTCTCCCTCCTCCTCCACCGA
TGAAGTAGGAATTGATCACTGGAACGAACTAGCTGATGATAATTATGCGT
TTCTGTTTATAAACCCTGAGAAAGGTTCAAAGAAAGTGCTGGTGAAGTGT
CTCGTGATGAACAGTAAATTGCTGGTTGATGCATTAGCTGAGGGAGCTTC
GGAGCCTGTGCATCTCGAAATCAATGTTGCAGACTACGTTGCAGAAAATG
GAGGCAATTACTCTGATAAGTTCAAGAATTTAGAGAAGCTTGTGACAGAT
CTTGATAAAGACATTATTTCAAAATTATACGGCTCCCCAAAAACAGCTAG
CTCAGAAAGATGTGAAGGATCAAGGCCTATTGTAACCGATCCTGCTTTTG
GATTTGAGCATGACGGGCCTCAATCTTATGTTACAGGAATTCCTGTTCCT
CCTATCAACCCAAGTCGTGGTAGCGATCTTTTTCCTGGCCCTGGTGCTGG
AATGTATCCTAGAAGGGGTGGCTTTGGCGTGATGGGAGCATGCTATAGGA
CTGATC
back to top