FC923560

Overview
NameFC923560
Unique NameFC923560
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length761
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10204 contig Ccv1_Contig10204:98..858. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923560 vs. ExPASy Swiss-Prot
Match: THOC4_TAEGU (THO complex subunit 4 OS=Taeniopygia guttata GN=THOC4 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 8.476e-31
Identity = 84/204 (41.18%), Postives = 112/204 (54.90%), Query Frame = 2
Query:   41 MSSALDMSLDDIIKNNKKXXXXXXXXXXXXXXXXXXXX-----------------IPNR-------GTNRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNTVQLDGKPMKIEIVGTNIATRTAAPAANVNFG 580
            M+  +DMSLDDIIK N+                                      + NR       G NR APY+  K     WQHD+F    S F     G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+PM I++V + I T+   PA +VN G
Sbjct:    1 MADKMDMSLDDIIKLNRSQRGASRGGRGGRGRGGTARGGGPGRGGVGGGRAGGGPVRNRPVMARGGGRNRPAPYSRPKQLPEKWQHDLFD---SGF-----GAGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIDTQ-RRPAQSVNRG 195          
BLAST of FC923560 vs. ExPASy Swiss-Prot
Match: REFP2_MOUSE (RNA and export factor-binding protein 2 OS=Mus musculus GN=Refbp2 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.107e-30
Identity = 78/180 (43.33%), Postives = 103/180 (57.22%), Query Frame = 2
Query:   41 MSSALDMSLDDIIKNNKKXXXXXXXXXXXXXXXXXXXXIPNRGTNRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNTVQLDGKPMKIEIVGTNIATRTAAPAANVNFG 580
            M+  +DMSLDDIIK N+                     I   G NR APY+  K     WQHD+F            G    +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++ YDRSGRS GTA+V + RRADA+ A+K+Y  V LDG+PM I++V + I  +   PA + N G
Sbjct:    1 MADKMDMSLDDIIKLNRNQRRVNRGGGPRRNRPA----IARGGRNRPAPYSRPKPLPDKWQHDLFDSG--------CGGGEGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQIDPQ-RRPAQSGNRG 167          
BLAST of FC923560 vs. ExPASy Swiss-Prot
Match: THOC4_BOVIN (THO complex subunit 4 OS=Bos taurus GN=THOC4 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.888e-30
Identity = 71/138 (51.45%), Postives = 95/138 (68.84%), Query Frame = 2
Query:  167 GTNRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNTVQLDGKPMKIEIVGTNIATRTAAPAANVNFG 580
            G NR APY+  K     WQHD+F    S F     G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+PM I++V + I T+   PA +VN G
Sbjct:   70 GRNRPAPYSRPKQLPDKWQHDLFD---SGF-----GGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIDTQ-RRPAQSVNRG 198          
BLAST of FC923560 vs. ExPASy Swiss-Prot
Match: THOC4_MOUSE (THO complex subunit 4 OS=Mus musculus GN=Thoc4 PE=1 SV=3)

HSP 1 Score: 132.494 bits (332), Expect = 2.466e-30
Identity = 70/138 (50.72%), Postives = 95/138 (68.84%), Query Frame = 2
Query:  167 GTNRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNTVQLDGKPMKIEIVGTNIATRTAAPAANVNFG 580
            G NR APY+  K     WQHD+F    S F     G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+PM I++V + I T+   PA ++N G
Sbjct:   69 GRNRPAPYSRPKQLPDKWQHDLFD---SGF-----GGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIDTQ-RRPAQSINRG 197          
BLAST of FC923560 vs. ExPASy Swiss-Prot
Match: THOC4_HUMAN (THO complex subunit 4 OS=Homo sapiens GN=THOC4 PE=1 SV=3)

HSP 1 Score: 130.954 bits (328), Expect = 7.175e-30
Identity = 70/138 (50.72%), Postives = 94/138 (68.12%), Query Frame = 2
Query:  167 GTNRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNTVQLDGKPMKIEIVGTNIATRTAAPAANVNFG 580
            G NR APY+  K     WQHD+F    S F     G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+PM I++V + I  +   PA +VN G
Sbjct:   70 GRNRPAPYSRPKQLPDKWQHDLFD---SGF-----GGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIDAQ-RRPAQSVNRG 198          
BLAST of FC923560 vs. ExPASy Swiss-Prot
Match: THOC4_XENTR (THO complex subunit 4 OS=Xenopus tropicalis GN=thoc4 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.036e-28
Identity = 65/124 (52.42%), Postives = 87/124 (70.16%), Query Frame = 2
Query:  167 GTNRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNTVQLDGKPMKIEIVGTNI 538
            G NR APY+  K     WQHD+F    S F     G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+PM I++V + I
Sbjct:   73 GRNRPAPYSRPKQLPDKWQHDLFD---SGF-----GTGAGMETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQI 188          
BLAST of FC923560 vs. ExPASy Swiss-Prot
Match: THO4A_XENLA (THO complex subunit 4-A OS=Xenopus laevis GN=thoc4-A PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.015e-28
Identity = 64/124 (51.61%), Postives = 86/124 (69.35%), Query Frame = 2
Query:  167 GTNRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNTVQLDGKPMKIEIVGTNI 538
            G NR  PY+  K     WQHD+F    S F     G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+PM I++V + I
Sbjct:   70 GRNRPTPYSRPKQLPDKWQHDLFD---SGF-----GAGAGMETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQI 185          
BLAST of FC923560 vs. ExPASy Swiss-Prot
Match: THO4B_XENLA (THO complex subunit 4-B OS=Xenopus laevis GN=thoc4-B PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.954e-27
Identity = 63/124 (50.81%), Postives = 85/124 (68.55%), Query Frame = 2
Query:  167 GTNRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNTVQLDGKPMKIEIVGTNI 538
            G NR  PY+  K     WQHD+F    S F     G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+ M I++V + I
Sbjct:   69 GRNRPTPYSRPKQLPDKWQHDLFD---SGF-----GTGAGMETGGKLLVSNLDFGVSDADIQELFAEFGSLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRSMNIQLVTSQI 184          
The following BLAST results are available for this feature:
BLAST of FC923560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
THOC4_TAEGU8.476e-3141.18THO complex subunit 4 OS=Taeniopygia guttata GN=TH... [more]
REFP2_MOUSE1.107e-3043.33RNA and export factor-binding protein 2 OS=Mus mus... [more]
THOC4_BOVIN1.888e-3051.45THO complex subunit 4 OS=Bos taurus GN=THOC4 PE=2 ... [more]
THOC4_MOUSE2.466e-3050.72THO complex subunit 4 OS=Mus musculus GN=Thoc4 PE=... [more]
THOC4_HUMAN7.175e-3050.72THO complex subunit 4 OS=Homo sapiens GN=THOC4 PE=... [more]
THOC4_XENTR1.036e-2852.42THO complex subunit 4 OS=Xenopus tropicalis GN=tho... [more]
THO4A_XENLA3.015e-2851.61THO complex subunit 4-A OS=Xenopus laevis GN=thoc4... [more]
THO4B_XENLA1.954e-2750.81THO complex subunit 4-B OS=Xenopus laevis GN=thoc4... [more]
back to top
Properties
Property NameValue
Genbank descriptionC31706E03EF StrClemenN Citrus clementina cDNA clone C31706E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923560 ID=FC923560; Name=FC923560; organism=Citrus clementina; type=EST; length=761bp
GATTTTATCTTTGATTTTCTATTTTTTGTTATAGTAAAAAATGTCAAGCG
CTTTAGATATGTCTCTTGACGATATCATCAAGAACAACAAAAAGTCTGGA
TCTGGCAACTTCCGGGGCCGGGGTCGAGGATCCGGACCCGGCCTTGCTCG
CCGCATCCCCAATCGTGGTACAAACCGTGTGGCGCCGTATACCACCGCCA
AAGCGCCGGAGACGACGTGGCAGCACGATATGTTTGCAGATCAGGTGAGT
GCTTTCCCGGTACAGCAGGCGGGGCGGGCTTCAGCTATAGAGACTGGAAC
GAAGCTGTACATATCAAATCTGGATTACGGTGTCTCTAATGAAGACATCA
AGGAACTGTTTTCTGAAGTTGGTGACTTGAAGCGGTACTCAATCCATTAT
GATAGAAGTGGGAGATCAAAGGGAACGGCAGAGGTTGTCTATTCACGACG
AGCAGATGCTGTGGCTGCAGTCAAGAGATACAACACTGTGCAGCTTGATG
GGAAGCCGATGAAAATTGAGATTGTGGGAACAAACATTGCAACCCGTACT
GCAGCTCCAGCTGCTAATGTCAACTTTGGAAATTCAAATGGTGTTCCTAG
AGGTGGACAAGGAAGAGGTGGTGCATTCAGAAGGCTTCGTGGAGGTGGGG
GTGGCGGCGGCCGTGGATTTGGAAGAGGTCGTGGACGTGGAAGAAGAACG
TATGAGAAGATATCTGCTGAAGATCTTGATGCTGATTTGGACNAGTATTA
TTCAGAAGCAT
back to top