FC923561

Overview
NameFC923561
Unique NameFC923561
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14282 contig Ccv1_Contig14282:10..738. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC923561 vs. ExPASy Swiss-Prot
Match: HDA19_ARATH (Histone deacetylase 19 OS=Arabidopsis thaliana GN=HDA19 PE=1 SV=2)

HSP 1 Score: 421.779 bits (1083), Expect = 1.889e-117
Identity = 197/206 (95.63%), Postives = 202/206 (98.06%), Query Frame = 1 
Query:  106 MGTGGNSLPSGTDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSF 723
            M TGGNSL SG DGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQ+MQVLKPFPAR+RDLCRFHADDYVSFLRSITPETQQDQ+RQLKRFNVGEDCPVFDGL+SFCQTYAGGSVGG+VKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFY TDRVMTVSF
Sbjct:    1 MDTGGNSLASGPDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQVLKPFPARDRDLCRFHADDYVSFLRSITPETQQDQIRQLKRFNVGEDCPVFDGLYSFCQTYAGGSVGGSVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYATDRVMTVSF 206
[Close]
BLAST of FC923561 vs. ExPASy Swiss-Prot
Match: HDA19_MAIZE (Probable histone deacetylase 19 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 375.17 bits (962), Expect = 2.027e-103
Identity = 176/206 (85.44%), Postives = 191/206 (92.72%), Query Frame = 1 
Query:  109 GTGGNSLPS-GTDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSF 723
            G+GGNSLPS G DG KR+VCYFYDP+VGNYYYGQGHPMKPHRIRMTH+LLA YGLL  MQV +P PARER+LCRFHA++Y++FLRS+TPETQQDQ+R LKRFNVGE+CPV DGL+SFCQTYAG SVGGAVK NHG  DIAINW+GGLHHAKKCEASGFCYVNDIVLAILELLK HERVLYVDIDIHHGDGVEEAFYTTDRVMTVSF
Sbjct:    7 GSGGNSLPSVGPDGQKRRVCYFYDPDVGNYYYGQGHPMKPHRIRMTHSLLARYGLLNQMQVYRPNPARERELCRFHAEEYINFLRSVTPETQQDQIRLLKRFNVGEECPVLDGLYSFCQTYAGASVGGAVKFNHG-HDIAINWSGGLHHAKKCEASGFCYVNDIVLAILELLKHHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSF 211
[Close]
BLAST of FC923561 vs. ExPASy Swiss-Prot
Match: HDAC1_CHICK (Histone deacetylase 1 OS=Gallus gallus GN=HDAC1 PE=2 SV=1)

HSP 1 Score: 313.153 bits (801), Expect = 9.461e-85
Identity = 142/195 (72.82%), Postives = 163/195 (83.59%), Query Frame = 1 
Query:  139 TDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSF 723
            T G KRKVCY+YD +VGNYYYGQGHPMKPHRIRMTH LL +YGL + M++ +P  A   ++ ++H+DDY+ FLRSI P+   +  +Q++RFNVGEDCPVFDGLF FCQ  AGGSV  AVKLN    DIA+NWAGGLHHAKK EASGFCYVNDIVLAILELLK H+RVLY+DIDIHHGDGVEEAFYTTDRVMTVSF
Sbjct:    4 TQGTKRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSAGGSVASAVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSF 198
[Close]
BLAST of FC923561 vs. ExPASy Swiss-Prot
Match: HDAC1_RAT (Histone deacetylase 1 OS=Rattus norvegicus GN=Hdac1 PE=2 SV=1)

HSP 1 Score: 311.612 bits (797), Expect = 2.753e-84
Identity = 141/195 (72.31%), Postives = 162/195 (83.08%), Query Frame = 1 
Query:  139 TDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSF 723
            T G KRKVCY+YD +VGNYYYGQGHPMKPHRIRMTH LL +YGL + M++ +P  A   ++ ++H+DDY+ FLRSI P+   +  +Q++RFNVGEDCPVFDGLF FCQ   GGSV  AVKLN    DIA+NWAGGLHHAKK EASGFCYVNDIVLAILELLK H+RVLY+DIDIHHGDGVEEAFYTTDRVMTVSF
Sbjct:    4 TQGTKRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSF 198
[Close]
BLAST of FC923561 vs. ExPASy Swiss-Prot
Match: HDAC1_MOUSE (Histone deacetylase 1 OS=Mus musculus GN=Hdac1 PE=1 SV=1)

HSP 1 Score: 311.612 bits (797), Expect = 2.753e-84
Identity = 141/195 (72.31%), Postives = 162/195 (83.08%), Query Frame = 1 
Query:  139 TDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSF 723
            T G KRKVCY+YD +VGNYYYGQGHPMKPHRIRMTH LL +YGL + M++ +P  A   ++ ++H+DDY+ FLRSI P+   +  +Q++RFNVGEDCPVFDGLF FCQ   GGSV  AVKLN    DIA+NWAGGLHHAKK EASGFCYVNDIVLAILELLK H+RVLY+DIDIHHGDGVEEAFYTTDRVMTVSF
Sbjct:    4 TQGTKRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSF 198
[Close]
BLAST of FC923561 vs. ExPASy Swiss-Prot
Match: HDAC1_BOVIN (Histone deacetylase 1 OS=Bos taurus GN=HDAC1 PE=2 SV=1)

HSP 1 Score: 311.612 bits (797), Expect = 2.753e-84
Identity = 141/195 (72.31%), Postives = 162/195 (83.08%), Query Frame = 1 
Query:  139 TDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSF 723
            T G KRKVCY+YD +VGNYYYGQGHPMKPHRIRMTH LL +YGL + M++ +P  A   ++ ++H+DDY+ FLRSI P+   +  +Q++RFNVGEDCPVFDGLF FCQ   GGSV  AVKLN    DIA+NWAGGLHHAKK EASGFCYVNDIVLAILELLK H+RVLY+DIDIHHGDGVEEAFYTTDRVMTVSF
Sbjct:    4 TQGTKRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSF 198
[Close]
BLAST of FC923561 vs. ExPASy Swiss-Prot
Match: HDAC1_PONAB (Histone deacetylase 1 OS=Pongo abelii GN=HDAC1 PE=2 SV=1)

HSP 1 Score: 310.457 bits (794), Expect = 6.132e-84
Identity = 140/195 (71.79%), Postives = 162/195 (83.08%), Query Frame = 1 
Query:  139 TDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSF 723
            T G +RKVCY+YD +VGNYYYGQGHPMKPHRIRMTH LL +YGL + M++ +P  A   ++ ++H+DDY+ FLRSI P+   +  +Q++RFNVGEDCPVFDGLF FCQ   GGSV  AVKLN    DIA+NWAGGLHHAKK EASGFCYVNDIVLAILELLK H+RVLY+DIDIHHGDGVEEAFYTTDRVMTVSF
Sbjct:    4 TQGTRRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSF 198
[Close]
BLAST of FC923561 vs. ExPASy Swiss-Prot
Match: HDAC1_HUMAN (Histone deacetylase 1 OS=Homo sapiens GN=HDAC1 PE=1 SV=1)

HSP 1 Score: 310.457 bits (794), Expect = 6.132e-84
Identity = 140/195 (71.79%), Postives = 162/195 (83.08%), Query Frame = 1 
Query:  139 TDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSF 723
            T G +RKVCY+YD +VGNYYYGQGHPMKPHRIRMTH LL +YGL + M++ +P  A   ++ ++H+DDY+ FLRSI P+   +  +Q++RFNVGEDCPVFDGLF FCQ   GGSV  AVKLN    DIA+NWAGGLHHAKK EASGFCYVNDIVLAILELLK H+RVLY+DIDIHHGDGVEEAFYTTDRVMTVSF
Sbjct:    4 TQGTRRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSF 198
[Close]
BLAST of FC923561 vs. ExPASy Swiss-Prot
Match: HDA1A_XENLA (Probable histone deacetylase 1-A OS=Xenopus laevis GN=hdac1-A PE=1 SV=1)

HSP 1 Score: 308.531 bits (789), Expect = 2.330e-83
Identity = 139/195 (71.28%), Postives = 163/195 (83.59%), Query Frame = 1 
Query:  139 TDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSF 723
            T G K+KVCY+YD +VGNYYYGQGHPMKPHRIRMTH LL +YGL + M++ +P  A   D+ ++H+DDY+ FLRSI P+   +  +Q++RFNVGEDCPVFDGLF FCQ  AGGSV  AVKLN    DI++NW+GGLHHAKK EASGFCYVNDIVLAILELLK H+RV+Y+DIDIHHGDGVEEAFYTTDRVMTVSF
Sbjct:    4 TLGTKKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIFRPHKASAEDMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSAGGSVASAVKLNKQQTDISVNWSGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVVYIDIDIHHGDGVEEAFYTTDRVMTVSF 198
[Close]
BLAST of FC923561 vs. ExPASy Swiss-Prot
Match: HDAC2_MOUSE (Histone deacetylase 2 OS=Mus musculus GN=Hdac2 PE=1 SV=1)

HSP 1 Score: 306.605 bits (784), Expect = 8.855e-83
Identity = 137/193 (70.98%), Postives = 162/193 (83.94%), Query Frame = 1 
Query:  145 GVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSF 723
            G K+KVCY+YD ++GNYYYGQGHPMKPHRIRMTH LL +YGL + M++ +P  A   ++ ++H+D+Y+ FLRSI P+   +  +Q++RFNVGEDCPVFDGLF FCQ   GGSV GAVKLN    D+A+NWAGGLHHAKK EASGFCYVNDIVLAILELLK H+RVLY+DIDIHHGDGVEEAFYTTDRVMTVSF
Sbjct:    7 GGKKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATAEEMTKYHSDEYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAGAVKLNRQQTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSF 199
The following BLAST results are available for this feature:
BLAST of FC923561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
HDA19_ARATH1.889e-11795.63Histone deacetylase 19 OS=Arabidopsis thaliana GN=... [more]
HDA19_MAIZE2.027e-10385.44Probable histone deacetylase 19 OS=Zea mays PE=2 S... [more]
HDAC1_CHICK9.461e-8572.82Histone deacetylase 1 OS=Gallus gallus GN=HDAC1 PE... [more]
HDAC1_RAT2.753e-8472.31Histone deacetylase 1 OS=Rattus norvegicus GN=Hdac... [more]
HDAC1_MOUSE2.753e-8472.31Histone deacetylase 1 OS=Mus musculus GN=Hdac1 PE=... [more]
HDAC1_BOVIN2.753e-8472.31Histone deacetylase 1 OS=Bos taurus GN=HDAC1 PE=2 ... [more]
HDAC1_PONAB6.132e-8471.79Histone deacetylase 1 OS=Pongo abelii GN=HDAC1 PE=... [more]
HDAC1_HUMAN6.132e-8471.79Histone deacetylase 1 OS=Homo sapiens GN=HDAC1 PE=... [more]
HDA1A_XENLA2.330e-8371.28Probable histone deacetylase 1-A OS=Xenopus laevis... [more]
HDAC2_MOUSE8.855e-8370.98Histone deacetylase 2 OS=Mus musculus GN=Hdac2 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC31706E04EF StrClemenN Citrus clementina cDNA clone C31706E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923561 ID=FC923561; Name=FC923561; organism=Citrus clementina; type=EST; length=729bp
GAAGTTAAGCCCCATCTGTTTTATTCTCTTGAGGTCTCGTCCCGTTGCAT
TCTTAGTTAGTGTTGGCTCTCCCAGTAAGTGCAGGCCCCAAGAAATATTA
TTCATATGGGCACTGGAGGCAATTCTTTACCATCTGGTACTGATGGCGTT
AAGAGAAAGGTGTGTTATTTCTACGACCCAGAGGTGGGCAATTACTACTA
TGGACAGGGTCACCCGATGAAACCCCATCGCATTCGTATGACCCATGCCC
TTCTCGCCCACTACGGCTTGCTTCAGAACATGCAGGTCCTCAAACCTTTT
CCTGCTAGGGAAAGGGATCTTTGCCGCTTCCATGCCGATGATTATGTCTC
CTTCCTCAGGAGTATCACCCCTGAGACTCAGCAGGATCAGCTTAGGCAGC
TCAAGCGCTTTAATGTTGGTGAAGATTGCCCTGTCTTTGACGGTCTTTTC
TCCTTCTGTCAAACTTATGCTGGGGGCTCTGTTGGTGGTGCTGTCAAGTT
GAATCACGGCCTCTGTGATATTGCTATCAATTGGGCCGGTGGCCTTCATC
ATGCTAAGAAATGTGAAGCTTCCGGATTCTGTTATGTCAATGACATTGTC
TTGGCCATTTTGGAGCTACTTAAGCAGCATGAGCGTGTATTATATGTAGA
TATTGATATCCATCATGGAGATGGCGTGGAGGAAGCATTTTATACAACTG
ATAGGGTAATGACTGTTTCATTCCCCATA
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