FC923591

Overview
NameFC923591
Unique NameFC923591
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length483
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923591 vs. ExPASy Swiss-Prot
Match: SBP_ARATH (Putative selenium-binding protein OS=Arabidopsis thaliana GN=At4g14030 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 2.289e-40
Identity = 74/88 (84.09%), Postives = 81/88 (92.05%), Query Frame = 1
Query:    1 GGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPKFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 264
            GGPQMIQLSLDGKRLY TNSLFSAWD QFYPE+ EKGSH++QIDV++EKGG+ INP FFVDF  EPDGP+LAHEMRYPGGDCTSDIWI
Sbjct:  403 GGPQMIQLSLDGKRLYATNSLFSAWDRQFYPEIMEKGSHIIQIDVDTEKGGLTINPDFFVDFGDEPDGPSLAHEMRYPGGDCTSDIWI 490          
BLAST of FC923591 vs. ExPASy Swiss-Prot
Match: SBP1_XENTR (Selenium-binding protein 1 OS=Xenopus tropicalis GN=selenbp1 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 3.782e-35
Identity = 65/88 (73.86%), Postives = 77/88 (87.50%), Query Frame = 1
Query:    1 GGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPKFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 264
            GGPQMIQLSLDGKRLYVTNSL+S WD QFYP++ ++GS MLQIDV++EKGG+ +NP F VDF  EP GP LAHE+RYPGGDC+SDIW+
Sbjct:  385 GGPQMIQLSLDGKRLYVTNSLYSKWDKQFYPDMIKEGSVMLQIDVDTEKGGLKLNPNFLVDFGKEPGGPVLAHELRYPGGDCSSDIWV 472          
BLAST of FC923591 vs. ExPASy Swiss-Prot
Match: SBP1A_XENLA (Selenium-binding protein 1-A OS=Xenopus laevis GN=selenbp1-A PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 3.782e-35
Identity = 65/88 (73.86%), Postives = 78/88 (88.64%), Query Frame = 1
Query:    1 GGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPKFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 264
            GGPQMIQLSLDGKR+YVT+SL+S WD QFYP+L ++G+ MLQIDV+++KGG+ +NP F VDF  EPDGP LAHE+RYPGGDCTSDIWI
Sbjct:  385 GGPQMIQLSLDGKRIYVTSSLYSIWDKQFYPDLLKEGAVMLQIDVDTKKGGLKLNPNFLVDFGKEPDGPVLAHEIRYPGGDCTSDIWI 472          
BLAST of FC923591 vs. ExPASy Swiss-Prot
Match: SBP1B_XENLA (Selenium-binding protein 1-B OS=Xenopus laevis GN=selenbp1-B PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 8.426e-35
Identity = 63/88 (71.59%), Postives = 78/88 (88.64%), Query Frame = 1
Query:    1 GGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPKFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 264
            GGPQMIQLSLDGKR+YVT+S++S WD QFYP++ ++G+ MLQIDV++EKGG+ +NP F VDF  EPDGP LAHE+RYPGGDC+SDIWI
Sbjct:  385 GGPQMIQLSLDGKRIYVTSSIYSIWDKQFYPDMLKEGAVMLQIDVDTEKGGLKLNPNFLVDFGKEPDGPVLAHELRYPGGDCSSDIWI 472          
BLAST of FC923591 vs. ExPASy Swiss-Prot
Match: SBP1_PONAB (Selenium-binding protein 1 OS=Pongo abelii GN=SELENBP1 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.877e-34
Identity = 66/88 (75.00%), Postives = 76/88 (86.36%), Query Frame = 1
Query:    1 GGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPKFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 264
            GGPQMIQLSLDGKRLYVT SL+SAWD QFYP+L  +GS MLQ+DV++ KGG+ +NP F VDF  EP GPALAHE+RYPGGDC+SDIWI
Sbjct:  385 GGPQMIQLSLDGKRLYVTTSLYSAWDKQFYPDLIREGSVMLQVDVDTVKGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWI 472          
BLAST of FC923591 vs. ExPASy Swiss-Prot
Match: SBP1_HUMAN (Selenium-binding protein 1 OS=Homo sapiens GN=SELENBP1 PE=1 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 2.452e-34
Identity = 65/88 (73.86%), Postives = 76/88 (86.36%), Query Frame = 1
Query:    1 GGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPKFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 264
            GGPQMIQLSLDGKRLY+T SL+SAWD QFYP+L  +GS MLQ+DV++ KGG+ +NP F VDF  EP GPALAHE+RYPGGDC+SDIWI
Sbjct:  385 GGPQMIQLSLDGKRLYITTSLYSAWDKQFYPDLIREGSVMLQVDVDTVKGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWI 472          
BLAST of FC923591 vs. ExPASy Swiss-Prot
Match: SBP1_RAT (Selenium-binding protein 1 OS=Rattus norvegicus GN=Selenbp1 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 7.133e-34
Identity = 66/88 (75.00%), Postives = 74/88 (84.09%), Query Frame = 1
Query:    1 GGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPKFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 264
            GGPQMIQLSLDGKRLYVT SL+SAWD QFYP L  +GS MLQIDV++  GG+ +NP F VDF  EP GPALAHE+RYPGGDC+SDIWI
Sbjct:  385 GGPQMIQLSLDGKRLYVTTSLYSAWDKQFYPNLIREGSVMLQIDVDTANGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWI 472          
BLAST of FC923591 vs. ExPASy Swiss-Prot
Match: SBP1_MOUSE (Selenium-binding protein 1 OS=Mus musculus GN=Selenbp1 PE=1 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 1.217e-33
Identity = 65/88 (73.86%), Postives = 74/88 (84.09%), Query Frame = 1
Query:    1 GGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPKFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 264
            GGPQMIQLSLDGKRLY T SL+SAWD QFYP+L  +GS MLQIDV++  GG+ +NP F VDF  EP GPALAHE+RYPGGDC+SDIWI
Sbjct:  385 GGPQMIQLSLDGKRLYATTSLYSAWDKQFYPDLIREGSMMLQIDVDTVNGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWI 472          
BLAST of FC923591 vs. ExPASy Swiss-Prot
Match: SBP1_BOVIN (Selenium-binding protein 1 OS=Bos taurus GN=SELENBP1 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 2.710e-33
Identity = 64/88 (72.73%), Postives = 75/88 (85.23%), Query Frame = 1
Query:    1 GGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPKFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 264
            GGPQMIQLSLDG RLYVT SL+SAWD QFYP+L  +GS MLQIDV++ +GG+ +NP F VDF  EP GPALAHE+RYPGGDC+SDIW+
Sbjct:  385 GGPQMIQLSLDGTRLYVTTSLYSAWDKQFYPDLIREGSVMLQIDVDTVRGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWL 472          
BLAST of FC923591 vs. ExPASy Swiss-Prot
Match: SBP2_MOUSE (Selenium-binding protein 2 OS=Mus musculus GN=Selenbp2 PE=1 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 1.030e-32
Identity = 63/88 (71.59%), Postives = 73/88 (82.95%), Query Frame = 1
Query:    1 GGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPKFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 264
            GGPQMIQLSLDGKRLY T SL+S WD QFYP+L  +GS MLQ+DV++  GG+ +NP F VDF  EP GPALAHE+RYPGGDC+SDIWI
Sbjct:  385 GGPQMIQLSLDGKRLYATTSLYSDWDKQFYPDLIREGSVMLQVDVDTVNGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWI 472          
The following BLAST results are available for this feature:
BLAST of FC923591 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
SBP_ARATH2.289e-4084.09Putative selenium-binding protein OS=Arabidopsis t... [more]
SBP1_XENTR3.782e-3573.86Selenium-binding protein 1 OS=Xenopus tropicalis G... [more]
SBP1A_XENLA3.782e-3573.86Selenium-binding protein 1-A OS=Xenopus laevis GN=... [more]
SBP1B_XENLA8.426e-3571.59Selenium-binding protein 1-B OS=Xenopus laevis GN=... [more]
SBP1_PONAB1.877e-3475.00Selenium-binding protein 1 OS=Pongo abelii GN=SELE... [more]
SBP1_HUMAN2.452e-3473.86Selenium-binding protein 1 OS=Homo sapiens GN=SELE... [more]
SBP1_RAT7.133e-3475.00Selenium-binding protein 1 OS=Rattus norvegicus GN... [more]
SBP1_MOUSE1.217e-3373.86Selenium-binding protein 1 OS=Mus musculus GN=Sele... [more]
SBP1_BOVIN2.710e-3372.73Selenium-binding protein 1 OS=Bos taurus GN=SELENB... [more]
SBP2_MOUSE1.030e-3271.59Selenium-binding protein 2 OS=Mus musculus GN=Sele... [more]

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Properties
Property NameValue
Genbank descriptionC31706H02EF StrClemenN Citrus clementina cDNA clone C31706H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923591 ID=FC923591; Name=FC923591; organism=Citrus clementina; type=EST; length=483bp
GGGGGACCTCAGATGATTCAGTTAAGCTTAGATGGGAAGCGGCTCTATGT
TACCAACTCGCTCTTTAGTGCATGGGATTGTCAATTTTATCCTGAACTCA
AGGAGAAAGGATCCCACATGTTACAGATTGATGTCAACTCCGAGAAGGGT
GGTATGGCTATCAATCCAAAATTTTTTGTGGACTTTGAAGCTGAACCTGA
TGGTCCTGCCCTAGCTCATGAGATGAGGTATCCTGGTGGTGATTGCACTT
CAGATATATGGATTTAACCATCTTAATCTATTCTGGCAATAAACGGTGTC
CATTATGTCCAGATAGGATACCGCTTTGATTGATGGGGTGATTACGTTTG
TATGTGGAAGTCAGTGTCCGTTCTGGTTCTGGAATAGCCAGTTTAAGATA
ATGGTTTGATTTATGCAGTAAATAAACTTTTTACCTTGTATAACTGCTCC
TGATGAATGTTTTACTGTTAATATTGTTGATTC
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