FC923594

Overview
NameFC923594
Unique NameFC923594
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15361 contig Ccv1_Contig15361:240..958. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923594 vs. ExPASy Swiss-Prot
Match: GLGL2_SOLTU (Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic/amyloplastic OS=Solanum tuberosum GN=AGPS2 PE=2 SV=1)

HSP 1 Score: 399.823 bits (1026), Expect = 7.447e-111
Identity = 192/233 (82.40%), Postives = 215/233 (92.27%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKVDRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAEGKVPIGVGQNTKIR 710
            ADITVSCVPMDD RASD+GLMKID +G IIQFAEKPKGP LK MQ DT++LGLS  +A  FPYIASMGVY+F+TDVLLNLL+S+YP  NDFGSEIIP++VKDHNVQA+LFNDYWEDIGT+KSFFDANLALT+QP KF+F DP+TPFYTSARFLPPTKVD+ +IVDAIISHGCFLREC++QHSIVGVRSRL+ GVEF+DTMMMGADYYQTE EIASLLAEGKVPIGVG NTKI+
Sbjct:  234 ADITVSCVPMDDGRASDFGLMKIDETGAIIQFAEKPKGPALKAMQVDTSILGLSEQEASNFPYIASMGVYVFKTDVLLNLLKSAYPSCNDFGSEIIPSAVKDHNVQAYLFNDYWEDIGTVKSFFDANLALTKQPPKFDFNDPKTPFYTSARFLPPTKVDKSRIVDAIISHGCFLRECNIQHSIVGVRSRLDYGVEFKDTMMMGADYYQTECEIASLLAEGKVPIGVGPNTKIQ 466          
BLAST of FC923594 vs. ExPASy Swiss-Prot
Match: GLGL1_BETVU (Glucose-1-phosphate adenylyltransferase large subunit, chloroplastic/amyloplastic OS=Beta vulgaris GN=AGPS1 PE=2 SV=1)

HSP 1 Score: 399.438 bits (1025), Expect = 9.727e-111
Identity = 192/233 (82.40%), Postives = 214/233 (91.85%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKVDRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAEGKVPIGVGQNTKIR 710
            ADITVSC+PMDDSRASDYGLMKID +G+I+ FAEKPKG DL  MQ DTT+LGLS  +A+  PYIASMGVY+FRTDVL+ LL   YP SNDFGSEIIP++V + NVQA+LFNDYWEDIGTIKSFFD+NLALT+QP KFEFYDP+TPFYTSARFLPPTKVDRCKIVD+I+SHGCFL+E S+QHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAEGKVP+GVGQNTKI+
Sbjct:  237 ADITVSCIPMDDSRASDYGLMKIDHTGRIVHFAEKPKGSDLTAMQVDTTVLGLSDLEAMSNPYIASMGVYVFRTDVLMELLNRKYPSSNDFGSEIIPSAVGESNVQAYLFNDYWEDIGTIKSFFDSNLALTQQPPKFEFYDPKTPFYTSARFLPPTKVDRCKIVDSIVSHGCFLQESSIQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAEGKVPVGVGQNTKIK 469          
BLAST of FC923594 vs. ExPASy Swiss-Prot
Match: GLGL2_ARATH (Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic OS=Arabidopsis thaliana GN=APL2 PE=2 SV=2)

HSP 1 Score: 393.275 bits (1009), Expect = 6.971e-109
Identity = 187/233 (80.26%), Postives = 215/233 (92.27%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKVDRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAEGKVPIGVGQNTKIR 710
            ADITVSC+PMD+SRASD+GL+KID+SG+IIQF+EKPKG DLK MQ DT++LGL   +A + PYIASMGVY+FR +VLL LLRSSYP SNDFGSEIIP +V +HNVQAFLFNDYWEDIGTI SFFDANLALTEQP KF+FYD +TPF+TS RFLPPTKVD+C+I+D+I+SHGCFLRECSVQHSIVG+RSRLESGVE QDTMMMGAD+YQTE+EIASLLAEGKVP+GVGQNTKI+
Sbjct:  233 ADITVSCLPMDESRASDFGLLKIDQSGKIIQFSEKPKGDDLKAMQVDTSILGLPPKEAAESPYIASMGVYVFRKEVLLKLLRSSYPTSNDFGSEIIPLAVGEHNVQAFLFNDYWEDIGTIGSFFDANLALTEQPPKFQFYDQKTPFFTSPRFLPPTKVDKCRILDSIVSHGCFLRECSVQHSIVGIRSRLESGVELQDTMMMGADFYQTEAEIASLLAEGKVPVGVGQNTKIK 465          
BLAST of FC923594 vs. ExPASy Swiss-Prot
Match: GLGL1_SOLTU (Glucose-1-phosphate adenylyltransferase large subunit 1 (Fragment) OS=Solanum tuberosum GN=AGPS1 PE=2 SV=1)

HSP 1 Score: 373.244 bits (957), Expect = 7.465e-103
Identity = 177/233 (75.97%), Postives = 208/233 (89.27%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKVDRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAEGKVPIGVGQNTKIR 710
            ADIT+SC P +DSRASD+GL+KID  G+++QFAEKPKG DLK MQ DTTL+GLS  DA K PYIASMGVY+F+TDVLL LL+ SYP SNDFGSEIIPA++ D+NVQA++F DYWEDIGTIKSF++A+LALT++  +F+FYDP+TPFYTS RFLPPTK+D CKI DAIISHGCFLR+CSV+HSIVG RSRL+ GVE +DT MMGADYYQTESEIASLLAEGKVPIG+G+NTKIR
Sbjct:  185 ADITLSCAPAEDSRASDFGLVKIDSRGRVVQFAEKPKGFDLKAMQVDTTLVGLSPQDAKKSPYIASMGVYVFKTDVLLKLLKWSYPTSNDFGSEIIPAAIDDYNVQAYIFKDYWEDIGTIKSFYNASLALTQEFPEFQFYDPKTPFYTSPRFLPPTKIDNCKIKDAIISHGCFLRDCSVEHSIVGERSRLDCGVELKDTFMMGADYYQTESEIASLLAEGKVPIGIGENTKIR 417          
BLAST of FC923594 vs. ExPASy Swiss-Prot
Match: GLGL4_ARATH (Probable glucose-1-phosphate adenylyltransferase large subunit, chloroplastic OS=Arabidopsis thaliana GN=At2g21590 PE=2 SV=1)

HSP 1 Score: 358.607 bits (919), Expect = 1.903e-98
Identity = 166/233 (71.24%), Postives = 202/233 (86.70%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKVDRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAEGKVPIGVGQNTKIR 710
            ADIT+SC P+ +SRAS++GL+KIDR G++I F+EKP G DLK MQ DTT+LGLS  +A   PYIASMGVY F+T+ LLNLL   YP SNDFGSE+IPA+++DH+VQ ++F DYWEDIGTIK+F++ANLAL E+  KFEFYDP TPFYTS RFLPPTK ++C++VD+IISHGCFLRECSVQ SI+G RSRL+ GVE QDT+M+GADYYQTESEIASLLAEGKVPIG+G++TKIR
Sbjct:  238 ADITLSCAPVSESRASNFGLVKIDRGGRVIHFSEKPTGVDLKSMQTDTTMLGLSHQEATDSPYIASMGVYCFKTEALLNLLTRQYPSSNDFGSEVIPAAIRDHDVQGYIFRDYWEDIGTIKTFYEANLALVEERPKFEFYDPETPFYTSPRFLPPTKAEKCRMVDSIISHGCFLRECSVQRSIIGERSRLDYGVELQDTLMLGADYYQTESEIASLLAEGKVPIGIGKDTKIR 470          
BLAST of FC923594 vs. ExPASy Swiss-Prot
Match: GLGL3_ARATH (Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplastic OS=Arabidopsis thaliana GN=APL3 PE=2 SV=2)

HSP 1 Score: 349.747 bits (896), Expect = 8.838e-96
Identity = 163/234 (69.66%), Postives = 199/234 (85.04%), Query Frame = 3
Query:    9 KADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKVDRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAEGKVPIGVGQNTKIR 710
            KADIT+SC P+D+SRAS+YGL+ IDRSG+++ F+EKP G DLK MQ DTT+ GLS  +A K PYIASMGVY F+T+ LL LL   YP SNDFGSEIIPA++KDHNVQ +++ DYWEDIGTIKSF++AN+AL E+  KFEFYD  TPFYTS RFLPPTK ++C+IV+++ISHGCFL ECS+Q SI+G RSRL+ GVE QDT+M+GAD YQTESEIASLLAEG VPIG+G++TKIR
Sbjct:  235 KADITLSCAPVDESRASEYGLVNIDRSGRVVHFSEKPTGIDLKSMQTDTTMHGLSHQEAAKSPYIASMGVYCFKTEALLKLLTWRYPSSNDFGSEIIPAAIKDHNVQGYIYRDYWEDIGTIKSFYEANIALVEEHPKFEFYDQNTPFYTSPRFLPPTKTEKCRIVNSVISHGCFLGECSIQRSIIGERSRLDYGVELQDTLMLGADSYQTESEIASLLAEGNVPIGIGRDTKIR 468          
BLAST of FC923594 vs. ExPASy Swiss-Prot
Match: GLGL1_HORVU (Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic/amyloplastic OS=Hordeum vulgare PE=2 SV=2)

HSP 1 Score: 343.969 bits (881), Expect = 4.850e-94
Identity = 157/232 (67.67%), Postives = 198/232 (85.34%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKVDRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAEGKVPIGVGQNTKI 707
            ADIT+SC P+ +SRAS+YGL+K D SG++IQF+EKPKG DL+ M+ DT+ L  ++ D  K+PYIASMGVY+F+ DVLLNLL+S Y   +DFGSEI+P ++ DHNVQA++F DYWEDIGTI+SFFDAN+AL EQP KFEFYDP+TPF+TS R+LPPTK D+C+I +AIISHGCFLREC ++HSI+GVRSRL SG E ++ MMMGAD Y+TE EI+ L++EGKVPIGVG+NTKI
Sbjct:  238 ADITLSCAPVGESRASEYGLVKFDSSGRVIQFSEKPKGDDLEAMKVDTSFLNFAIDDPAKYPYIASMGVYVFKRDVLLNLLKSRYAELHDFGSEILPRALHDHNVQAYVFTDYWEDIGTIRSFFDANMALCEQPPKFEFYDPKTPFFTSPRYLPPTKSDKCRIKEAIISHGCFLRECKIEHSIIGVRSRLNSGSELKNAMMMGADSYETEDEISRLMSEGKVPIGVGENTKI 469          
BLAST of FC923594 vs. ExPASy Swiss-Prot
Match: GLGL2_WHEAT (Glucose-1-phosphate adenylyltransferase large subunit, chloroplastic/amyloplastic OS=Triticum aestivum GN=AGP-L PE=2 SV=2)

HSP 1 Score: 343.584 bits (880), Expect = 6.334e-94
Identity = 156/232 (67.24%), Postives = 198/232 (85.34%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKVDRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAEGKVPIGVGQNTKI 707
            ADIT+SC P+ +SRAS+YGL+K D SG+++QF+EKPKG DL+ M+ DT+ L  ++ D  K+PYIASMGVY+F+ DVLLNLL+S Y   +DFGSEI+P ++ DHNVQA++F DYWEDIGTI+SFFDAN+AL EQP KFEFYDP+TPF+TS R+LPPTK D+C+I +AIISHGCFLREC ++HSI+GVRSRL SG E ++ MMMGAD Y+TE EI+ L++EGKVPIGVG+NTKI
Sbjct:  237 ADITLSCAPVGESRASEYGLVKFDSSGRVVQFSEKPKGDDLEAMKVDTSFLNFAIDDPAKYPYIASMGVYVFKRDVLLNLLKSRYAELHDFGSEILPRALHDHNVQAYVFTDYWEDIGTIRSFFDANMALCEQPPKFEFYDPKTPFFTSPRYLPPTKSDKCRIKEAIISHGCFLRECKIEHSIIGVRSRLNSGSELKNAMMMGADSYETEDEISRLMSEGKVPIGVGENTKI 468          
BLAST of FC923594 vs. ExPASy Swiss-Prot
Match: GLGL2_MAIZE (Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic/amyloplastic OS=Zea mays GN=AGP2 PE=2 SV=1)

HSP 1 Score: 332.028 bits (850), Expect = 1.907e-90
Identity = 157/233 (67.38%), Postives = 196/233 (84.12%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDA-VKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKVDRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAEGKVPIGVGQNTKI 707
            ADIT+SC P+ +SRASDYGL+K D SG++IQF+EKPKG  L+ M+ DT+ L  +      ++PYIASMGVY+F+ DVLL+LL+S Y   +DFGSEI+P ++ +HNVQA++F DYWEDIGTI+SFFDAN+AL EQP KFEFYDP+TPF+TS R+LPPTK D+C+I DAIISHGCFLREC+++HSIVGV SRL SG E ++TMMMGAD Y+TE EI+ LLAEGKVPIGVG+NTKI
Sbjct:  234 ADITLSCAPVGESRASDYGLVKFDSSGRVIQFSEKPKGAALEEMKVDTSFLNFATCTLPAEYPYIASMGVYVFKRDVLLDLLKSRYAELHDFGSEILPKALHEHNVQAYVFTDYWEDIGTIRSFFDANMALCEQPPKFEFYDPKTPFFTSPRYLPPTKSDKCRIKDAIISHGCFLRECAIEHSIVGVPSRLNSGCELKNTMMMGADLYETEDEISRLLAEGKVPIGVGENTKI 466          
BLAST of FC923594 vs. ExPASy Swiss-Prot
Match: GLGL1_ARATH (Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic OS=Arabidopsis thaliana GN=ADG2 PE=1 SV=3)

HSP 1 Score: 328.561 bits (841), Expect = 2.109e-89
Identity = 152/233 (65.24%), Postives = 192/233 (82.40%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKVDRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAEGKVPIGVGQNTKIR 710
            ADI++SC+P+DD RASD+GLMKID  G++I F+EKPKG DLK M  DTT+LGLS  +A K PYIASMGVY+F+ ++LLNLLR  +P +NDFGSEIIP S K+  V A+LFNDYWEDIGTI+SFF+ANLALTE P  F FYD   P YTS R LPP+K+D  K++D+IISHG FL  C ++HSIVG+RSR+ S V+ +DT+M+GADYY+TE+E+A+LLAEG VPIG+G+NTKI+
Sbjct:  237 ADISISCIPIDDRRASDFGLMKIDDKGRVISFSEKPKGDDLKAMAVDTTILGLSKEEAEKKPYIASMGVYVFKKEILLNLLRWRFPTANDFGSEIIPFSAKEFYVNAYLFNDYWEDIGTIRSFFEANLALTEHPGAFSFYDAAKPIYTSRRNLPPSKIDNSKLIDSIISHGSFLTNCLIEHSIVGIRSRVGSNVQLKDTVMLGADYYETEAEVAALLAEGNVPIGIGENTKIQ 469          
The following BLAST results are available for this feature:
BLAST of FC923594 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 308
Match NameE-valueIdentityDescription
GLGL2_SOLTU7.447e-11182.40Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL1_BETVU9.727e-11182.40Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL2_ARATH6.971e-10980.26Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL1_SOLTU7.465e-10375.97Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL4_ARATH1.903e-9871.24Probable glucose-1-phosphate adenylyltransferase l... [more]
GLGL3_ARATH8.838e-9669.66Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL1_HORVU4.850e-9467.67Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL2_WHEAT6.334e-9467.24Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL2_MAIZE1.907e-9067.38Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL1_ARATH2.109e-8965.24Glucose-1-phosphate adenylyltransferase large subu... [more]

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Properties
Property NameValue
Genbank descriptionC31706H05EF StrClemenN Citrus clementina cDNA clone C31706H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923594 ID=FC923594; Name=FC923594; organism=Citrus clementina; type=EST; length=719bp
ATCGACCAAAAGCTGATATTACAGTCTCATGTGTACCAATGGATGACAGC
CGTGCATCAGATTATGGACTAATGAAGATTGACCGCTCAGGGCAAATCAT
CCAATTTGCTGAGAAACCTAAGGGCCCTGATCTGAAAGGAATGCAATGTG
ATACTACTCTTCTTGGTCTATCTATGCCAGATGCTGTCAAATTTCCTTAC
ATTGCATCAATGGGTGTTTACTTGTTTAGAACTGATGTCCTACTAAATCT
CTTGAGATCTAGCTATCCCTTATCCAATGACTTTGGCTCTGAAATTATTC
CAGCTTCTGTGAAGGATCACAATGTCCAAGCCTTTTTATTCAATGACTAC
TGGGAGGACATTGGAACAATAAAGTCCTTTTTTGATGCCAATTTGGCCCT
CACAGAACAGCCTGCGAAGTTTGAATTTTATGATCCCAGGACACCTTTCT
ATACGTCTGCTAGATTCTTGCCACCCACTAAAGTTGATCGATGCAAGATA
GTGGATGCCATAATTTCACACGGTTGCTTCTTGCGAGAATGTTCGGTGCA
ACATTCCATAGTAGGCGTGCGCTCACGTTTAGAGTCTGGTGTTGAGTTTC
AGGATACTATGATGATGGGTGCAGACTACTATCAAACTGAATCTGAAATT
GCATCTCTACTTGCGGAAGGAAAGGTTCCAATTGGTGTTGGACAGAATAC
AAAAATCAGAATGCATCAT
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