FC923602

Overview
NameFC923602
Unique NameFC923602
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14506 contig Ccv1_Contig14506:1..719. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923602 vs. ExPASy Swiss-Prot
Match: DEGP1_ARATH (Protease Do-like 1, chloroplastic OS=Arabidopsis thaliana GN=DEGP1 PE=1 SV=2)

HSP 1 Score: 254.603 bits (649), Expect = 3.870e-67
Identity = 144/242 (59.50%), Postives = 171/242 (70.66%), Query Frame = 2
Query:   23 SLISSSTFLLSRSPNTTLAPLNKHN--------FPLRPSRARATAATIICCSNSPTTSATRSIVSKLLLFTKPXXXXXXXFESLFVFCGSVVLSFTLLFSN--VDSASAFVVTPQRKLQTDELATVRLFQENTPSVVNITNLAARQDAFTLDVLEVPQGSGSGFVWDSKGHVVTNYHVIRGASDIRVTFADQSAYDAKIVGFDQDKDVAVLRIDAPKDKLRPIPIGVSADLFVGQKVYAIGN 718
            SL+ SST  L   P++ L+  N  +        +P+R  R     + +    N+      R      L FT          +  F+ C SV LSF+L  ++  V+SASAFVV+  +KLQTDELATVRLFQENTPSVV ITNLA RQDAFTLDVLEVPQGSGSGFVWD +GH+VTNYHVIRGASD+RVT ADQ+ +DAK+VGFDQDKDVAVLRIDAPK+KLRPIP+GVSADL VGQKV+AIGN
Sbjct:    8 SLLLSSTLFLHSPPSSHLSFFNLSSSRSSPISLYPIRSKRYFRILSKLSLNDNN------RDDDDDTLHFTP-----FSAVKPFFLLCTSVALSFSLFAASPAVESASAFVVSTPKKLQTDELATVRLFQENTPSVVYITNLAVRQDAFTLDVLEVPQGSGSGFVWDKQGHIVTNYHVIRGASDLRVTLADQTTFDAKVVGFDQDKDVAVLRIDAPKNKLRPIPVGVSADLLVGQKVFAIGN 238          
BLAST of FC923602 vs. ExPASy Swiss-Prot
Match: DEGP8_ARATH (Protease Do-like 8, chloroplastic OS=Arabidopsis thaliana GN=DEGP8 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.479e-23
Identity = 61/144 (42.36%), Postives = 86/144 (59.72%), Query Frame = 2
Query:  326 VTPQRKLQTDELATVRLFQENTPSVVNITNLAARQDAFTLDVLEVPQGSGSGFVWDSKGHVVTNYHVIR-------------GASDIRVTFADQSAYDAKIVGFDQDKDVAVLRIDAPKDKLRPIPIGVSADLFVGQKVYAIGN 718
            V P   L   E   V+LF++NT SVVNI ++  R       V+E+P+G+GSG VWD +G++VTNYHVI              G  +I  +   Q  ++ K+VG D+ KD+AVL++DAP+  L+PI +G S  L VGQ+  AIGN
Sbjct:  106 VFPAGPLFPTEGRIVQLFEKNTYSVVNIFDVTLRPQLKMTGVVEIPEGNGSGVVWDGQGYIVTNYHVIGNALSRNPSPGDVVGRVNILASDGVQKNFEGKLVGADRAKDLAVLKVDAPETLLKPIKVGQSNSLKVGQQCLAIGN 249          
BLAST of FC923602 vs. ExPASy Swiss-Prot
Match: DEGP5_ARATH (Protease Do-like 5, chloroplastic OS=Arabidopsis thaliana GN=DEGP5 PE=1 SV=3)

HSP 1 Score: 99.7525 bits (247), Expect = 1.593e-20
Identity = 67/179 (37.43%), Postives = 98/179 (54.75%), Query Frame = 2
Query:  248 LFVFCGSVVLSFTLLFSN-----VDSASAFVVTPQRK--LQTDELATVRLFQENTPSVVNITNL----AARQDAFTLDVLEVPQGSGSGFVWDSKGHVVTNYHVIR-------GASDIRVTFADQS----AYDAKIVGFDQDKDVAVLRIDAPKDKLRPIPIGVSADLFVGQKVYAIGN 718
            + +F  S+ L+ +LL SN     ++SA A     +++  L+ +E   V LFQ+ +PSVV I  +     +  D  T +     +G+GSGFVWD  GH+VTNYHVI        G    +V+  D      + + KIVG D D D+AVL+I+    +L P+ +G S DL VGQ  +AIGN
Sbjct:   45 IMIFGSSLALTSSLLGSNQQRLPMESAIALEQFKEKEEELEEEEERNVNLFQKTSPSVVYIEAIELPKTSSGDILTDEENGKIEGTGSGFVWDKLGHIVTNYHVIAKLATDQFGLQRCKVSLVDAKGTRFSKEGKIVGLDPDNDLAVLKIETEGRELNPVVLGTSNDLRVGQSCFAIGN 223          
BLAST of FC923602 vs. ExPASy Swiss-Prot
Match: Y938_SYNP6 (Uncharacterized serine protease syc0938_d OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=syc0938_d PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.708e-11
Identity = 34/88 (38.64%), Postives = 51/88 (57.95%), Query Frame = 2
Query:  455 EVPQGSGSGFVWDSKGHVVTNYHVIRGASDIRVTFADQSAYDAKIVGFDQDKDVAVLRIDAPKDKLRPIPIGVSADLFVGQKVYAIGN 718
            EV +G GSGFV D  G ++TN HV+  A  +RVT  D   +  ++ G D   D+A++ +D   ++L    IG S+++ VG    AIGN
Sbjct:  119 EVQRGQGSGFVVDGNGLIMTNAHVVANADQVRVTLRDGREFTGRVRGADSVTDLALVEVDTKGERLPTARIGNSSNVEVGDWAIAIGN 206          
The following BLAST results are available for this feature:
BLAST of FC923602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
DEGP1_ARATH3.870e-6759.50Protease Do-like 1, chloroplastic OS=Arabidopsis t... [more]
DEGP8_ARATH4.479e-2342.36Protease Do-like 8, chloroplastic OS=Arabidopsis t... [more]
DEGP5_ARATH1.593e-2037.43Protease Do-like 5, chloroplastic OS=Arabidopsis t... [more]
Y938_SYNP66.708e-1138.64Uncharacterized serine protease syc0938_d OS=Synec... [more]
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Properties
Property NameValue
Genbank descriptionC31707A01EF StrClemenN Citrus clementina cDNA clone C31707A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923602 ID=FC923602; Name=FC923602; organism=Citrus clementina; type=EST; length=719bp
GGAAAGCCAGAAGATGGCTTATTCACTCATTTCTTCCAGTACGTTCTTAC
TCTCTCGCTCCCCAAACACGACGCTAGCTCCGCTCAATAAACACAATTTC
CCTCTCAGACCATCACGGGCACGTGCCACTGCTGCTACTATCATTTGCTG
CAGCAACTCTCCAACAACATCCGCCACTCGCTCAATTGTCTCAAAGCTGT
TACTGTTCACTAAGCCGTCATCCTCCGCCTCTTCGGCTTTTGAATCACTC
TTCGTATTCTGCGGTTCTGTGGTTCTATCTTTCACTCTCCTCTTCTCCAA
CGTTGATTCCGCGTCGGCTTTCGTCGTCACTCCGCAACGTAAGCTTCAAA
CCGACGAACTCGCTACCGTTCGTCTCTTTCAAGAGAACACTCCTTCTGTT
GTTAATATCACCAATCTTGCTGCCAGGCAGGATGCATTTACACTGGATGT
GTTGGAGGTCCCACAAGGATCCGGTTCGGGTTTTGTCTGGGATTCCAAAG
GTCACGTTGTCACCAATTATCATGTGATTCGTGGTGCTTCTGATATCAGG
GTCACTTTTGCTGATCAATCAGCTTATGATGCGAAAATTGTTGGATTTGA
CCAAGACAAGGATGTTGCTGTGTTGCGTATTGATGCACCGAAAGATAAAT
TAAGACCTATTCCTATTGGTGTCTCTGCAGACTTGTTTGTTGGTCAGAAA
GTATATGCTATTGGCAACC
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