FC923613

Overview
NameFC923613
Unique NameFC923613
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15517 contig Ccv1_Contig15517:40..732. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923613 vs. ExPASy Swiss-Prot
Match: SYP51_ARATH (Syntaxin-51 OS=Arabidopsis thaliana GN=SYP51 PE=1 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 2.994e-77
Identity = 145/190 (76.32%), Postives = 170/190 (89.47%), Query Frame = 1
Query:  124 MASASDSWIKEYNEAIKLADDINGMISERSSMPASGPESQRHASAIRRKITILGTRLDSLQSLLSKLPGKQPISEKEMNRRKDMLANLRSKVNQMASTLNMSNFANRDSLLGPEIKSADVMNRATGLDNQGLVGFQRQIMREQDEGLEKLEETVVSTKHIASAVNEELDLHTRLIDDLDQHVDVTDSRLR 693
            MAS+SDSW++ YNEA+KL+++INGMISERSS   +GP++QR ASAIRRKITI G +LDSLQSLL+++ GK PISEKEMNRRKDM+ NLRSK NQMA+ LNMSNFANRDSLLGP+IK  D M+R TG+DNQG+VG+QRQ+MREQDEGLE+LE TV+STKHIA AV+EELDL TRLIDDLD HVDVTDSRLR
Sbjct:    1 MASSSDSWMRAYNEALKLSEEINGMISERSSSAVTGPDAQRRASAIRRKITIFGNKLDSLQSLLAEIHGK-PISEKEMNRRKDMVGNLRSKANQMANALNMSNFANRDSLLGPDIKPDDSMSRVTGMDNQGIVGYQRQVMREQDEGLEQLEGTVMSTKHIALAVSEELDLQTRLIDDLDYHVDVTDSRLR 189          
BLAST of FC923613 vs. ExPASy Swiss-Prot
Match: SYP52_ARATH (Syntaxin-52 OS=Arabidopsis thaliana GN=SYP52 PE=1 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 3.910e-77
Identity = 143/190 (75.26%), Postives = 168/190 (88.42%), Query Frame = 1
Query:  124 MASASDSWIKEYNEAIKLADDINGMISERSSMPASGPESQRHASAIRRKITILGTRLDSLQSLLSKLPGKQPISEKEMNRRKDMLANLRSKVNQMASTLNMSNFANRDSLLGPEIKSADVMNRATGLDNQGLVGFQRQIMREQDEGLEKLEETVVSTKHIASAVNEELDLHTRLIDDLDQHVDVTDSRLR 693
            MAS+SD W++EYNEA+KL++DINGM+SER++   +GP++QR ASAIRRKITILGTRLDSLQSLL K+PGKQ +SEKEMNRRKDM+ NLRSK NQ+AS LNMSNFANRDSL G ++K  D +NR +G+DNQG+V FQRQ+MREQDEGLEKLEETV+STKHIA AVNEEL L TRLIDDLD  VD+TDSRLR
Sbjct:    1 MASSSDPWMREYNEALKLSEDINGMMSERNASGLTGPDAQRRASAIRRKITILGTRLDSLQSLLVKVPGKQHVSEKEMNRRKDMVGNLRSKTNQVASALNMSNFANRDSLFGTDLKPDDAINRVSGMDNQGIVVFQRQVMREQDEGLEKLEETVMSTKHIALAVNEELTLQTRLIDDLDYDVDITDSRLR 190          
BLAST of FC923613 vs. ExPASy Swiss-Prot
Match: STX8B_DICDI (Probable syntaxin-8B OS=Dictyostelium discoideum GN=syn8B PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.566e-16
Identity = 62/200 (31.00%), Postives = 103/200 (51.50%), Query Frame = 1
Query:  139 DSWIKEYNEAIKLADDINGMISERSSMPASGPES-QRHASA-IRRKITILGTRLDSLQSLLSKLPGKQPISEKEMNRRKDMLANLRSKVNQMASTLN--MSNFANRDSLLGPEIK-SADVMNRATG----------LDNQGLVGFQRQIMREQDEGLEKLEETVVSTKHIASAVNEELDLHTRLIDDLDQHVDVTDSRLR 693
            D W+ E++  +KL + +   I E S    + P   Q++  A +R  +  +   +  LQ  L+     + I EKE+ RRK+ + +L S  NQ+ STL+  ++N + ++ L+G          NR  G           DNQ L   Q+ IMREQDE L+ L ++++  K++A A++ ELD H  ++DD++   D    RLR
Sbjct:    3 DYWLNEHDNIVKLINSLTADIKEYSIQQRNNPGIVQKNTPAKLRNGLVHITNEILRLQDSLT-YGNNRNIQEKELLRRKNKVESLISMKNQLNSTLDAAINNTSQKNELMGNNNGVGIGYSNRQFGKPKETEATKQFDNQQLFTNQQHIMREQDESLDLLSQSIMRQKNMAHAMSNELDQHNEMLDDVEIGTDAVSMRLR 201          
BLAST of FC923613 vs. ExPASy Swiss-Prot
Match: STX8_RAT (Syntaxin-8 OS=Rattus norvegicus GN=Stx8 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.794e-13
Identity = 54/202 (26.73%), Postives = 94/202 (46.53%), Query Frame = 1
Query:  133 ASDSWIKEYNEAIKLADDINGMISERSSMPASGPESQRHASAIRRKITILGTRLDSLQSLLSKLPGKQPISEKEMNRRKDMLANLRSKVNQMASTLNMSNFAN--------RDSLLGPEIKSA-------DVMNRATGLDNQGLVGFQRQIMREQDEGLEKLEETVVSTKHIASAVNEELDLHTRLIDDLDQHVDVTDSRLR 693
            A D W   Y+   ++A +I   I ER+     G ++ +    IR  +  L  ++D L+ LL +    + I++ E +RR+++L +L ++       L +++F N        R SL+  E K         +      GL    +   Q++I++EQD GL+ L   +   K +   +  ELD    +IDDL   V+ TD +LR
Sbjct:    2 APDPWFSTYDSTCQIAQEIAEKIQERNQCERRGEKTPKLTLTIRTLLKNLKVKIDLLKDLLLRAVSTRQITQLEGDRRQNLLDDLVTR-----ERLLLASFKNEGSEPDLIRSSLMSEEAKRGTPNPWLCEEPEETRGLGFDEIRQQQQKIIQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLR 198          
BLAST of FC923613 vs. ExPASy Swiss-Prot
Match: STX8_MOUSE (Syntaxin-8 OS=Mus musculus GN=Stx8 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.794e-13
Identity = 54/202 (26.73%), Postives = 94/202 (46.53%), Query Frame = 1
Query:  133 ASDSWIKEYNEAIKLADDINGMISERSSMPASGPESQRHASAIRRKITILGTRLDSLQSLLSKLPGKQPISEKEMNRRKDMLANLRSKVNQMASTLNMSNFAN--------RDSLLGPEIKSA-------DVMNRATGLDNQGLVGFQRQIMREQDEGLEKLEETVVSTKHIASAVNEELDLHTRLIDDLDQHVDVTDSRLR 693
            A D W   Y+   ++A +I   I ER+     G ++ +    IR  +  L  ++D L+ LL +    + I++ E +RR+++L +L ++       L +++F N        R SL+  E K         +      GL    +   Q++I++EQD GL+ L   +   K +   +  ELD    +IDDL   V+ TD +LR
Sbjct:    2 APDPWFSTYDSTCQIAQEIAEKIQERNQCERRGEKTPKLTLTIRTLLKNLKVKIDLLKDLLLRAVSTRQITQLEGDRRQNLLDDLVTR-----ERLLLASFKNEGAEPDLIRSSLMSEEAKRGTPNPWLCEEPEETRGLGFDEIRQQQQKIIQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLR 198          
BLAST of FC923613 vs. ExPASy Swiss-Prot
Match: STX8_HUMAN (Syntaxin-8 OS=Homo sapiens GN=STX8 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.674e-11
Identity = 52/202 (25.74%), Postives = 92/202 (45.54%), Query Frame = 1
Query:  133 ASDSWIKEYNEAIKLADDINGMISERSSMPASGPESQRHASAIRRKITILGTRLDSLQSLLSKLPGKQPISEKEMNRRKDMLANLRSKVNQMASTLNMSNFAN--------RDSLLGPEIKSA-------DVMNRATGLDNQGLVGFQRQIMREQDEGLEKLEETVVSTKHIASAVNEELDLHTRLIDDLDQHVDVTDSRLR 693
            A D W   Y+   ++A +I   I +R+     G ++ +    IR  +  L  ++  L+ LL +      I++ E +RR+++L +L ++       L +++F N        R SL+  E K         +      GL    +   Q++I++EQD GL+ L   +   K +   +  ELD    +IDDL   V+ TD +LR
Sbjct:    2 APDPWFSTYDSTCQIAQEIAEKIQQRNQYERKGEKAPKLTVTIRALLQNLKEKIALLKDLLLRAVSTHQITQLEGDRRQNLLDDLVTR-----ERLLLASFKNEGAEPDLIRSSLMSEEAKRGAPNPWLFEEPEETRGLGFDEIRQQQQKIIQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLR 198          
The following BLAST results are available for this feature:
BLAST of FC923613 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
SYP51_ARATH2.994e-7776.32Syntaxin-51 OS=Arabidopsis thaliana GN=SYP51 PE=1 ... [more]
SYP52_ARATH3.910e-7775.26Syntaxin-52 OS=Arabidopsis thaliana GN=SYP52 PE=1 ... [more]
STX8B_DICDI6.566e-1631.00Probable syntaxin-8B OS=Dictyostelium discoideum G... [more]
STX8_RAT6.794e-1326.73Syntaxin-8 OS=Rattus norvegicus GN=Stx8 PE=1 SV=1[more]
STX8_MOUSE6.794e-1326.73Syntaxin-8 OS=Mus musculus GN=Stx8 PE=2 SV=1[more]
STX8_HUMAN1.674e-1125.74Syntaxin-8 OS=Homo sapiens GN=STX8 PE=1 SV=2[more]
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Properties
Property NameValue
Genbank descriptionC31707A12EF StrClemenN Citrus clementina cDNA clone C31707A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923613 ID=FC923613; Name=FC923613; organism=Citrus clementina; type=EST; length=693bp
GAGTGTTGACGCTAATTCACGTCTTTTAGCTCGTTAATGCGACTTAGCTT
TGCTCCATCCTAAACTTCTCCAATCCAATCCCTCTCTCAGTCTAGAATCC
GAAATCTACCCATAATCTGTTCAATGGCTTCTGCTTCAGACTCGTGGATA
AAGGAATACAATGAAGCAATAAAACTGGCAGATGATATTAATGGCATGAT
ATCAGAACGAAGTTCGATGCCCGCATCTGGACCTGAATCCCAGCGTCATG
CATCTGCCATACGGAGGAAGATTACCATATTAGGAACCAGATTGGATAGC
TTGCAGTCCCTTTTATCTAAGCTTCCCGGGAAGCAGCCCATTTCGGAGAA
AGAGATGAATCGTCGGAAGGACATGCTTGCTAATTTGAGATCCAAAGTGA
ATCAAATGGCTTCCACGTTGAACATGTCAAACTTTGCTAATAGGGATAGC
CTGCTTGGACCAGAGATAAAGTCAGCCGATGTCATGAACCGAGCAACTGG
CTTGGACAATCAGGGCCTTGTTGGTTTTCAACGACAAATTATGAGAGAGC
AAGATGAAGGGCTTGAGAAACTGGAGGAGACAGTAGTCAGTACAAAGCAT
ATTGCATCGGCAGTCAATGAAGAACTTGACCTGCACACTAGACTTATTGA
TGACTTGGACCAGCATGTGGATGTTACAGATTCTCGCCTACGG
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