FC923632

Overview
NameFC923632
Unique NameFC923632
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8975 contig Ccv1_Contig8975:3..715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923632 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 353.214 bits (905), Expect = 7.866e-97
Identity = 173/202 (85.64%), Postives = 181/202 (89.60%), Query Frame = 1
Query:  103 ETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGLAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFTLWVLGR*E 708
            E ARQI+G+R +QS T   RK SFVVRAASTPPVKQGA+R LWFASKQSLSYLDG LPGD+GFDPLGLSDPEGTGGFIEPKWLAYGEVINGR+AMLGA GAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWAD YTLFVLEMALMG AEHRRFQDWA PGSMG+QYFLG EK LGGSGDPAYPGGPLF     G+ E
Sbjct:   17 EAARQIIGSRISQSVT---RKASFVVRAASTPPVKQGANRQLWFASKQSLSYLDGRLPGDFGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDE 215          
BLAST of FC923632 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 338.576 bits (867), Expect = 2.005e-92
Identity = 167/203 (82.27%), Postives = 174/203 (85.71%), Query Frame = 1
Query:  103 ETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGA-DRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGLAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFTLWVLGR*E 708
            E  RQ   ARS  S  G SRKG  +VRAA+TPPVKQG  DRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEP+WLAYGEVINGR+AMLGAVGAIAPE LGK GLIPQETALAWFQTGVIPPAGTYNYWAD YTLFVLEMALMG AEHRRFQDWA PGSMG+QYFLG EK  GGSG+PAYPGGP F     G+ E
Sbjct:   17 EAVRQSFRARSLPSSVGCSRKG--LVRAAATPPVKQGGVDRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDE 217          
BLAST of FC923632 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.114e-25
Identity = 77/194 (39.69%), Postives = 97/194 (50.00%), Query Frame = 1
Query:  118 ILGARSAQSPTGSS-RKGSFVV----RAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGLAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLF 681
            I+GA  A    G   R   F+     R+ +   V    DRPLWF       +LDGSLPGD+GFDPLGL SDPE        KW A  E+++ R+AMLGA G   PE L K G++      +W+       AG   Y+ D  TLFV+E+ L+G AE RR+ D   PG +         K  G   D  YPGG  F
Sbjct:   26 IVGATKASFLGGKRLRVSKFIAPVGSRSVAVSAVAADPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESL------KWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVL---NTPSWY------TAGEQEYFTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTG--TDVGYPGGLWF 202          
BLAST of FC923632 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.049e-24
Identity = 69/168 (41.07%), Postives = 90/168 (53.57%), Query Frame = 1
Query:  181 RAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGLAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLF 681
            R+A+T  V    DRPLWF       +LDGSLPGD+GFDPLGL SDPE        +W    E+++ R+AMLGA G   PE+L K G++      +W+       AG   Y+ D  TLF++E+ L+G AE RR+ D   PG +         K  G   D  YPGG  F
Sbjct:   52 RSATTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESL------RWNQQAELVHCRWAMLGAAGIFIPELLTKIGIL---NTPSWY------TAGEQEYFTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTG--TDVGYPGGLWF 202          
BLAST of FC923632 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.187e-22
Identity = 70/177 (39.55%), Postives = 89/177 (50.28%), Query Frame = 1
Query:  145 PTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGLAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGG 672
            P G S   SF V A      K+G     W     S  YL GSLPGD GFDPLGL+ DPE        +W    E++NGR+AMLG  G + PE+    G+I       W+       AG   Y+A   TLFV+E  L    E RR+QD  NPGS+ +     F++Y   +G+  YPGG
Sbjct:   38 PVGCSPSASFKVEA------KKGE----WLPGLASPGYLTGSLPGDNGFDPLGLAEDPENL------RWFVQAELVNGRWAMLGVAGMLLPEVFTSIGII---NVPKWY------AAGKEEYFASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPI--FKQYSLPAGEVGYPGG 187          
BLAST of FC923632 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.187e-22
Identity = 66/164 (40.24%), Postives = 84/164 (51.22%), Query Frame = 1
Query:  184 AASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGLAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGG 672
            +A T   K  A +  W     S  YL GSL GD GFDPLGL+ DPE        KW    E++NGR+AMLG  G + PE+  K G+I       W+       AG   Y+A   TLFV+E  L    E RR+QD  NPGS+ +     F++Y    G+  YPGG
Sbjct:   42 SAKTSSFKVEAKKGEWLPGLASPDYLTGSLAGDNGFDPLGLAEDPENL------KWFVQAELVNGRWAMLGVAGMLLPEVFTKIGII---NVPEWYD------AGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPI--FKQYSLPKGEVGYPGG 188          
BLAST of FC923632 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.051e-16
Identity = 58/148 (39.19%), Postives = 77/148 (52.03%), Query Frame = 1
Query:  229 WFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGLAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPG 669
            W    QS +YLDGSL GD GFDPL L+ DPE      + +W    +V+NGR+AMLG  G + PE+L KAGL+    A  W +       G   Y+A   T   + M+     E RR+QD  NPGS+ +     F+ Y     +  YPG
Sbjct:   36 WLPGLQSPAYLDGSLEGDNGFDPLALAEDPE------DLRWFVQADVVNGRWAMLGVAGMLIPEVLTKAGLM---NAPEWLRL-----PGKETYFASSSTALRVHMS-STYVEIRRWQDIKNPGSVNQDPI--FKSYSLPPHECGYPG 166          
BLAST of FC923632 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.285e-14
Identity = 62/199 (31.16%), Postives = 96/199 (48.24%), Query Frame = 1
Query:  103 ETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPA-GTYNYWADPYTLFVLEMALMGLAEHRRFQDWANPGSMGRQYFLGF----EKYLGGSGDPAYPGGPLF 681
            ++++ +L   S      S+     VV AA+  P K          +     +LDGSLPGD+GFDPLGL  DP     F+  KW    E+I+GR+AML  +G      +G+A      T + WF+ G  P A   +++     TL   ++ LMG  E +R+ D+ +P S   ++   +    E +   +G+  YPGG  F
Sbjct:   24 KSSQSLLFVNSKVGAGVSTTSRKLVVVAAAAAPKKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDP----AFL--KWYREAELIHGRWAMLAVLGI----FVGQAW-----TGIPWFEAGADPGAVAPFSFG----TLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFF 203          
BLAST of FC923632 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.421e-13
Identity = 65/204 (31.86%), Postives = 98/204 (48.04%), Query Frame = 1
Query:  109 ARQILGARSAQSPTGSSRKGSFVVRAAST-----PPVKQGADR--PLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPA-GTYNYWADPYTLFVLEMALMGLAEHRRFQDWANPGSMGRQYFLGF----EKYLGGSGDPAYPGGPLF 681
            ++ +L A  A    G++    F V AA+      P V+ G +   P W         LDGSLPGDYGFDPLGL  DP     F+  KW    E+I+GR+AM   +G      +G+A      + + WF+ G  P A   +++     TL   ++ LMG  E +R+ D+ +P S   ++   +    E +   +G+  YPGG  F
Sbjct:   23 SQALLAAPLAARVGGAATPKRFTVLAAAAKKSWIPAVRGGGNLVDPEW---------LDGSLPGDYGFDPLGLGKDP----AFL--KWYREAELIHGRWAMAAVLGI----FVGQAW-----SGIPWFEAGADPGAIAPFSFG----TLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKFF 198          
BLAST of FC923632 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.856e-13
Identity = 63/166 (37.95%), Postives = 81/166 (48.80%), Query Frame = 1
Query:  211 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGLAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGG 672
            GADRP +    S+Q+ SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G I PE+L K G+  Q     WF+ G  I   G  +Y  +P          ++  ++ LMGL E  R                     LG   DP YPGG
Sbjct:   50 GADRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCIFPELLSKNGV--QFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYRVGGGP----------------LGEGLDPLYPGG 191          
The following BLAST results are available for this feature:
BLAST of FC923632 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
CB13_SOLLC7.866e-9785.64Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PEA2.005e-9282.27Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB12_PETHY2.114e-2539.69Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB12_SOLLC1.049e-2441.07Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB24_PEA2.187e-2239.55Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB24_ARATH2.187e-2240.24Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB120_HORVU1.051e-1639.19Chlorophyll a-b binding protein 1B-20, chloroplast... [more]
CB4_SPIOL1.285e-1431.16Chlorophyll a-b binding protein CP24, chloroplasti... [more]
CB4A_SOLLC1.421e-1331.86Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
CB21_LEMGI1.856e-1337.95Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionC31707C08EF StrClemenN Citrus clementina cDNA clone C31707C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923632 ID=FC923632; Name=FC923632; organism=Citrus clementina; type=EST; length=712bp
GACTTTTAATTTATCGTATTGAAGTAGAGAAACAAGAGGAAAAAAGAAAA
TTAAAAAATGGCAACCCAAGCTTTGGTTTCATCATCTCTTACATCTTCAG
TGGAGACTGCGAGACAAATTCTTGGAGCAAGATCAGCTCAATCCCCAACT
GGGTCATCAAGAAAAGGTTCCTTTGTTGTTAGGGCAGCTTCTACTCCTCC
TGTTAAGCAAGGAGCAGACAGACCGTTGTGGTTTGCATCCAAACAAAGCC
TTTCATACTTGGATGGCAGCCTCCCCGGAGACTATGGATTCGACCCACTT
GGTCTCTCAGACCCTGAAGGCACAGGAGGGTTCATTGAGCCAAAATGGCT
GGCCTACGGCGAGGTCATCAACGGTCGTTATGCCATGTTGGGAGCTGTGG
GAGCCATTGCACCGGAGATTCTTGGCAAGGCAGGCCTCATTCCGCAAGAA
ACTGCCCTGGCCTGGTTCCAAACCGGTGTGATCCCCCCAGCGGGAACATA
CAACTACTGGGCAGACCCTTACACACTTTTCGTCCTGGAAATGGCACTCA
TGGGACTTGCCGAGCACCGGAGATTCCAAGACTGGGCAAATCCAGGATCA
ATGGGCAGGCAATACTTCCTCGGATTCGAGAAATACTTGGGAGGTTCCGG
CGATCCGGCTTACCCTGGAGGACCTCTATTCACCCTCTGGGTCTTGGGAA
GATGAGAAGTCA
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