FC923637

Overview
NameFC923637
Unique NameFC923637
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length517
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14263 contig Ccv1_Contig14263:34..550. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC923637 vs. ExPASy Swiss-Prot
Match: ZIP6_ARATH (Zinc transporter 6, chloroplastic OS=Arabidopsis thaliana GN=ZIP6 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 5.664e-30
Identity = 66/127 (51.97%), Postives = 80/127 (62.99%), Query Frame = 1 
Query:   88 AGCVVDTR---RALECRNGEAAAHLKXXXXXXXXXXXXXXXXLPVVLARYLQGKPSYDKATLIIKCFAAGVILSTSLVHVLPDAFDALSDCQVASKHPWRDFPFXXXXXXXXXXXXXXXDITASAHV 459
            A CV  T    RA  CR+GE A+HLK                 PV+LA+Y  GKP YDKA L+IKCFAAGVILSTSLVHVLP+AF++L+DCQV+S+HPW+DFPF               D+TAS H+
Sbjct:    2 ASCVTGTEAAIRAAACRDGEEASHLKIVAVFAIFLTSVFGVWGPVLLAKYFHGKPLYDKAILVIKCFAAGVILSTSLVHVLPEAFESLADCQVSSRHPWKDFPFAGLVTMIGAITALLVDLTASEHM 128
The following BLAST results are available for this feature:
BLAST of FC923637 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ZIP6_ARATH5.664e-3051.97Zinc transporter 6, chloroplastic OS=Arabidopsis t... [more]
back to top
Properties
Property NameValue
Genbank descriptionC31707D01EF StrClemenN Citrus clementina cDNA clone C31707D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923637 ID=FC923637; Name=FC923637; organism=Citrus clementina; type=EST; length=517bp
GGCAACAAAAAGTCCAAATCCCAAATTCAGTTTCATCAATTTTCTTTTAA
GGTTAATTATATATCCCTCGTCCCTATGGCTGCTGGTGCTGGGTGTGTCG
TGGATACAAGGCGTGCCCTGGAGTGCAGAAACGGTGAAGCAGCTGCTCAC
TTGAAGTTTGTTTCAGTCTTTATAATCTTCTTTACAAGCGTAATAGGAGT
ATCTTTGCCTGTCGTGTTGGCTCGGTACTTACAAGGCAAGCCCAGTTATG
ATAAAGCAACCTTGATAATCAAGTGCTTCGCAGCTGGTGTGATTCTCTCA
ACTTCTCTTGTCCACGTGCTCCCTGATGCTTTTGATGCTCTCTCTGACTG
CCAAGTGGCGTCCAAGCATCCTTGGAGAGACTTCCCCTTCGCAGGTTTGG
TTACTTTGATTGGTGCTTTGCTGGCTTTGTTAGTTGACATAACTGCAAGT
GCACACGTGGAGCATGGCCATGGCCATGGCCATAACACCACGACNATAAG
AAAGTAAAATTACGTGC
back to top