FC923641

Overview
NameFC923641
Unique NameFC923641
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC923641_ssr3 microsatellite FC923641_ssr3:3..18. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10382 contig Ccv1_Contig10382:39..777. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923641 vs. ExPASy Swiss-Prot
Match: TRM61_HUMAN (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRMT61A OS=Homo sapiens GN=TRMT61A PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.734e-44
Identity = 95/206 (46.12%), Postives = 126/206 (61.17%), Query Frame = 2
Query:   92 ISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHS-DWIGKPFGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLK-QDGILCSFS 703
            +++   IKEGD  I+   H  M AV+V + +  Q R G  +HS D IG+PFGS V   +GG+VY+L PTPELWTL L HRTQILY  DI+ + M LEL PG +V               R +APTGH++T +FH+QRA  ARE+F+   V  +VTV  +D+   GF    S +AD++FLD+P PW A+  A   LK + G  CSFS
Sbjct:    4 VAYEELIKEGDTAILSLGHGAMVAVRVQRGAQTQTRHGVLRHSVDLIGRPFGSKVTCGRGGWVYVLHPTPELWTLNLPHRTQILYSTDIALITMMLELRPGSVVCESGTGSGSVSHAIIRTIAPTGHLHTVEFHQQRAEKAREEFQEHRVGRWVTVRTQDVCRSGF--GVSHVADAVFLDIPSPWEAVGHAWDALKVEGGRFCSFS 207          

HSP 2 Score: 25.0238 bits (53), Expect = 3.734e-44
Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 1
Query:  697 FLTCIEQVQRSCES 738
            F  CIEQVQR+C++
Sbjct:  206 FSPCIEQVQRTCQA 219          
BLAST of FC923641 vs. ExPASy Swiss-Prot
Match: TRM61_RAT (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRMT61A OS=Rattus norvegicus GN=Trmt61a PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.263e-44
Identity = 94/206 (45.63%), Postives = 129/206 (62.62%), Query Frame = 2
Query:   92 ISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHS-DWIGKPFGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLK-QDGILCSFS 703
            +++   IKEGD  I+   H  M AV+V + +  Q R G  +HS D IG+PFGS V  ++GG+VY+L PTPELWT+ L HRTQILY  DI+ + M LEL PG +V               R++APTGH++T +FH+QRA  ARE+F++  VS +VTV  +D+   GF      +AD++FLD+P PW A+  A   LK + G  CSFS
Sbjct:    4 VAYEELIKEGDTAILSLGHGSMVAVRVQRGAQTQTRHGVLRHSVDLIGRPFGSKVTCSRGGWVYVLHPTPELWTVNLPHRTQILYSTDIALITMMLELRPGSVVCESGTGSGSVSHAIIRSIAPTGHLHTVEFHQQRADKAREEFQQHRVSQWVTVHTQDVCRSGF--GVVHVADAVFLDIPSPWEAVGHAWDALKVEGGRFCSFS 207          

HSP 2 Score: 25.0238 bits (53), Expect = 8.263e-44
Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 1
Query:  697 FLTCIEQVQRSCES 738
            F  CIEQVQR+C++
Sbjct:  206 FSPCIEQVQRTCQA 219          
BLAST of FC923641 vs. ExPASy Swiss-Prot
Match: TRM61_MOUSE (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRMT61A OS=Mus musculus GN=Trmt61a PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.403e-43
Identity = 94/206 (45.63%), Postives = 128/206 (62.14%), Query Frame = 2
Query:   92 ISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHS-DWIGKPFGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLK-QDGILCSFS 703
            +++   IKEGD  I+   H  M AV+V + +  Q R G  +HS D IG+PFGS V  ++GG+VY+L PTPELWT+ L HRTQILY  DI+ + M LEL PG +V               R+VAPTGH++T +FH+QRA  ARE+F+   +S +VTV  +D+   GF      +AD++FLD+P PW A+  A   LK + G  CSFS
Sbjct:    4 VAYEELIKEGDTAILSLGHGSMVAVRVQRGAQTQTRHGVLRHSVDLIGRPFGSKVICSRGGWVYVLHPTPELWTVNLPHRTQILYSTDIALITMMLELRPGSVVCESGTGSGSVSHAIIRSVAPTGHLHTVEFHQQRADKAREEFQEHRLSQWVTVHTQDVCCSGF--GVVHVADAVFLDIPSPWEAVGHAWDALKVEGGRFCSFS 207          

HSP 2 Score: 25.0238 bits (53), Expect = 1.403e-43
Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 1
Query:  697 FLTCIEQVQRSCES 738
            F  CIEQVQR+C++
Sbjct:  206 FSPCIEQVQRTCQA 219          
BLAST of FC923641 vs. ExPASy Swiss-Prot
Match: TRM61_BOVIN (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRMT61A OS=Bos taurus GN=TRMT61A PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.106e-43
Identity = 95/206 (46.12%), Postives = 126/206 (61.17%), Query Frame = 2
Query:   92 ISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHS-DWIGKPFGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLK-QDGILCSFS 703
            +++   IKEGD  I+   H  M AV+V + +  Q R G  +HS D IG+PFGS V   +GG+VY+L PTPELWTL L HRTQILY  DI+ + M LEL PG +V               R +APTGH++T +FH+QRA  ARE+F+   V  +VTV  +D+   GF    S +AD++FLD+P PW A+  A   LK + G  CSFS
Sbjct:    4 VAYEELIKEGDTAILSLGHGAMVAVRVQRGAQTQTRHGVLRHSVDLIGRPFGSKVTCGRGGWVYVLHPTPELWTLNLPHRTQILYSTDIALLTMMLELRPGSVVCESGTGSGSVSHAIIRTIAPTGHLHTVEFHQQRAERAREEFQEHRVGRWVTVLNQDVCRSGF--GVSHVADAVFLDIPSPWEAVGHAWDALKVEGGRFCSFS 207          

HSP 2 Score: 25.0238 bits (53), Expect = 3.106e-43
Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 1
Query:  697 FLTCIEQVQRSCES 738
            F  CIEQVQR+C++
Sbjct:  206 FSPCIEQVQRTCQA 219          
BLAST of FC923641 vs. ExPASy Swiss-Prot
Match: TRM61_DICDI (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit trmt61a OS=Dictyostelium discoideum GN=trmt61a PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 5.550e-39
Identity = 83/203 (40.89%), Postives = 125/203 (61.58%), Query Frame = 2
Query:  104 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKG-GFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG-QGF-PDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 703
            + IKEGD V++Y   D M  + +  N+ + ++FG+++H + IGK +GS + S+ G GF +++A TPELW++ L HRTQIL+  DIS +I  LEL  G                 AR +AP GH++TF+FHE+R   AR+DF+  G+  ++TV  RD  G +GF   + +   D++FLDLP PW AI +A  ++    +LCSFS
Sbjct:    6 KIIKEGDRVVMYNGKDNMAVLTMESNNVYNSKFGSYRHKNIIGKEYGSKLSSDNGNGFCHVIAMTPELWSITLDHRTQILFNLDISTIIFNLELKNGSRAVESGTGSGSLSSSIARTIAPKGHLFTFEFHEERVKFARKDFKDNGLDQYITVTHRDACGKEGFLRQDINNDIDAVFLDLPSPWDAIENAIAVMHDGSMLCSFS 208          

HSP 2 Score: 21.9422 bits (45), Expect = 5.550e-39
Identity = 8/12 (66.67%), Postives = 9/12 (75.00%), Query Frame = 1
Query:  697 FLTCIEQVQRSC 732
            F  CIEQVQ +C
Sbjct:  207 FSPCIEQVQNTC 218          
BLAST of FC923641 vs. ExPASy Swiss-Prot
Match: TRM61_CRYNE (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRM61 OS=Cryptococcus neoformans GN=TRM61 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.246e-33
Identity = 81/207 (39.13%), Postives = 121/207 (58.45%), Query Frame = 2
Query:  110 IKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKG--GFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGI--LCSFSHVLSK 718
            I+ GD+VI+Y   D M A+ +     F N++G + H   IG+ +GS + S     G+V++L PTPELWTL L HRTQILY+ DIS++ M L +  G  V              +R+V P+G V +F++H QR  +A ++FE  G+++ V +  R++  +GF D      + +FLDLP PW AIP A K L++D I  +C FS  L +
Sbjct:   14 IEAGDIVILYMARDNMTAITITPGETFHNKYGRYPHDMLIGQKYGSKIHSPPPHPGYVHVLRPTPELWTLSLPHRTQILYLPDISYITMRLGVRVGGKVIEAGTGSGSMTHSLSRSVGPSGQVMSFEYHRQRFETALKEFESHGLTN-VRLQHRNVCKEGFGDAQG--VEGVFLDLPAPWEAIPHAVKALRRDIITRICCFSPCLEQ 217          
BLAST of FC923641 vs. ExPASy Swiss-Prot
Match: TRM61_KLULA (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRM61 OS=Kluyveromyces lactis GN=TRM61 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.483e-32
Identity = 84/223 (37.67%), Postives = 120/223 (53.81%), Query Frame = 2
Query:  110 IKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVF-----SNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVAPTGHVYTFDFHEQRAASAREDFERTGV--SSFVTVGVRDIQGQGF--------PDEFSG--------LADSIFLDLPQPWLAIPSAKKMLKQDG--ILCSFS 703
            IKEGDLV+ +   D +K + V     F  R+GAF HSD IGKPFGS +      SN+ GF+++L PTPELW++ L HRTQI+Y  D S+++  +E  P   V              AR+    GH+++++FHE R   A+++F+  G+  +   T+  RD+   GF          EF G         AD IFLDLP PW AIP+   ++ ++    LC FS
Sbjct:   11 IKEGDLVLAWLSRDNLKPITVKAGEVFNTRYGAFSHSDMIGKPFGSQIAIRTKGSNRFGFIHVLQPTPELWSISLPHRTQIVYTPDSSYIMQRMECNPRSRVIEAGTGSGSFSHAFARS---AGHLFSYEFHEVRYEQAKQEFKEHGLLEAGNTTITHRDVCKDGFEIKNGDTTSHEFRGPEETKVELNADCIFLDLPAPWDAIPNLTSVISKEKKVNLCCFS 230          
BLAST of FC923641 vs. ExPASy Swiss-Prot
Match: TRM61_CANAL (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRM61 OS=Candida albicans GN=TRM61 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.232e-31
Identity = 79/200 (39.50%), Postives = 108/200 (54.00%), Query Frame = 2
Query:  110 IKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKG-GFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFP-DEFSGLADSIFLDLPQPWLAIPSAKKML---KQDGILC 694
            I+EGDLV+ Y     +K + V +   F  R+G F+H   IG  +G  +   KG GF++LL PTPELWTL L HRTQI+Y  D S++I  L + PG  V              AR V  +G V+T++FHE R   A+++ E   + +  T+  RD+   GF  D  S   D +FLDLP PW AIP    ++   K  GI C
Sbjct:   10 IEEGDLVLAYISRSTIKPINVKKGEIFNTRYGHFEHDKMIGMKYGEQMPGAKGYGFIHLLHPTPELWTLSLPHRTQIVYSPDSSYIIQRLNVKPGSRVIEAGTGSASFTHSFARTVTLSGKVFTYEFHEPRYLEAKKELEEHKLDN-TTITHRDVCNDGFSIDNESIEGDVVFLDLPSPWDAIPHLDSVISTSKAAGICC 208          
BLAST of FC923641 vs. ExPASy Swiss-Prot
Match: TRM61_DEBHA (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRM61 OS=Debaryomyces hansenii GN=TRM61 PE=3 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 1.043e-30
Identity = 74/208 (35.58%), Postives = 109/208 (52.40%), Query Frame = 2
Query:  110 IKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKG-GFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF-----PDEFSG----LADSIFLDLPQPWLAIPSAKKMLKQD---GILC 694
            I+EGDLV+ +     +K + V + S    R+G F+H   IG  +G  +   KG GF++LL PTPELWT+ L HRTQI+Y  D S++I  L +  G  V              AR +   G ++T++FHE R   A+++ E  G+ +   +  RD+   GF     P++F        D +FLDLP PW AIP+ K ++      GI C
Sbjct:   10 IEEGDLVLAFLGRSNIKPITVTKGSQLNTRYGNFEHDRMIGMKYGEQMPGAKGVGFIHLLYPTPELWTVSLPHRTQIVYTPDSSYIIQRLNVTSGTRVIEAGTGSGSFSHSFARTIGVEGRLFTYEFHEPRYIEAKKELEDHGLLANTVITHRDVCNDGFEISNIPEDFKKDDGICGDVVFLDLPSPWTAIPNLKSVISHQSRVGICC 217          
BLAST of FC923641 vs. ExPASy Swiss-Prot
Match: TRM61_YEAST (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRM61 OS=Saccharomyces cerevisiae GN=GCD14 PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.178e-30
Identity = 85/221 (38.46%), Postives = 115/221 (52.04%), Query Frame = 2
Query:  110 IKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVF-----SNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVAPTGHVYTFDFHEQRAASAREDFERTG-VSSFVTVGVRDIQGQGF--------PDEF-------SGLADSIFLDLPQPWLAIPSAKKMLKQDGI--LCSFS 703
            IKEGDL +++   D +K V++     F  R+G+F H D IGKP+GS +      SNK  FV++L PTPELWTL L HRTQI+Y  D S+++  L   P   V              AR+V   GH+++F+FH  R   A E+F+  G +   VT+  RD+   GF          EF       S  A+ +FLDLP PW AIP    ++  D    LC FS
Sbjct:   13 IKEGDLTLIWVSRDNIKPVRMHSEEVFNTRYGSFPHKDIIGKPYGSQIAIRTKGSNKFAFVHVLQPTPELWTLSLPHRTQIVYTPDSSYIMQRLNCSPHSRVIEAGTGSGSFSHAFARSV---GHLFSFEFHHIRYEQALEEFKEHGLIDDNVTITHRDVCQGGFLIKKGDTTSYEFGNNETAASLNANVVFLDLPAPWDAIPHLDSVISVDEKVGLCCFS 230          
The following BLAST results are available for this feature:
BLAST of FC923641 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
TRM61_HUMAN3.734e-4446.12tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]
TRM61_RAT8.263e-4445.63tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]
TRM61_MOUSE1.403e-4345.63tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]
TRM61_BOVIN3.106e-4346.12tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]
TRM61_DICDI5.550e-3940.89tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]
TRM61_CRYNE2.246e-3339.13tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]
TRM61_KLULA2.483e-3237.67tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]
TRM61_CANAL1.232e-3139.50tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]
TRM61_DEBHA1.043e-3035.58tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]
TRM61_YEAST5.178e-3038.46tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]

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Properties
Property NameValue
Genbank descriptionC31707D05EF StrClemenN Citrus clementina cDNA clone C31707D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923641 ID=FC923641; Name=FC923641; organism=Citrus clementina; type=EST; length=738bp
GGCTCTCTCTCTCTCTCTCCCTCTCAGATTTTGCTGTCTGACTTCCTGAA
CCCGTCACAATATGATGTTGCCAACTGATCCAACGAAAAAGATATCCTTT
ACTCGATGCATTAAAGAAGGGGACTTGGTTATTGTCTATGAGAGGCATGA
CTGCATGAAAGCTGTTAAAGTATGCCAGAACTCAGCTTTCCAGAACCGTT
TTGGTGCGTTTAAACATTCAGACTGGATTGGGAAGCCCTTTGGGTCTATG
GTGTTCAGTAACAAGGGCGGATTTGTTTACTTGTTAGCCCCAACTCCGGA
GTTATGGACTCTGGTTTTGAGCCACAGAACTCAGATACTTTACATTGCAG
ATATTAGCTTTGTCATCATGTACTTAGAACTTGTTCCTGGTTGTTTGGTT
CTGGAGTCAGGGACTGGAAGTGGATCTTTGACAACCTCTCTTGCAAGGGC
TGTAGCTCCTACAGGACATGTCTATACTTTTGATTTTCATGAGCAAAGGG
CTGCCTCAGCTAGGGAAGACTTTGAGAGGACAGGAGTGAGCAGCTTTGTT
ACTGTGGGTGTTAGAGATATCCAGGGTCAGGGATTTCCTGATGAATTTAG
TGGGTTAGCTGATTCTATATTTCTGGACCTACCTCAGCCCTGGCTGGCAA
TTCCATCAGCAAAGAAAATGTTGAAACAAGACGGGATTCTGTGTTCTTTC
TCACATGTATTGAGCAAGTGCAGCGCTCATGTGAATCT
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