FC923662

Overview
NameFC923662
Unique NameFC923662
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length759
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923662 vs. ExPASy Swiss-Prot
Match: GALM_ACICA (Aldose 1-epimerase OS=Acinetobacter calcoaceticus GN=mro PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.454e-22
Identity = 62/190 (32.63%), Postives = 91/190 (47.89%), Query Frame = 3
Query:  177 LCFVALVAIGFIVNGSVADEDKKNECDKNNSEEVKFYELKKGD-FSVKFTNWGATIVSVFLPXXXXXXXXXXXXXXSVDDYKNDTT----YFGSVVGRVANRIGGAQFTLDGTHYKLVANEKSNMLHGGPKGFSDVIWKVKTYENEGPTPKIVFSYHSTDGEEGFPGDLDVTVSYSLTGEKELKCKMKAK 731
            L  + +    F    + A  + K+     N ++V  Y +   +  SV F ++G  I  +  P               +  Y+   T    +FG ++GR ANRIG A+F+LDG  Y L  N   N LH G  GF   +W+VK   ++G T K      S +G++GFPG LDV V YSL+ + E K + KAK
Sbjct:    4 LAILGVTVYSFAQLANAATLNVKSYGTTQNGQKVDLYTMSNNNGVSVSFISFGGVITQILTPDAQGKQNNIVLGFDDLKGYEVTDTKEGIHFGGLIGRYANRIGNAKFSLDGKTYNLEKNNGPNSLHSGNPGFDKRVWQVKPLVSKGETVKASLKLTSPNGDQGFPGKLDVEVIYSLSDQNEFKIEYKAK 193          
BLAST of FC923662 vs. ExPASy Swiss-Prot
Match: GALM_BOVIN (Aldose 1-epimerase OS=Bos taurus GN=GALM PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.140e-22
Identity = 60/153 (39.22%), Postives = 79/153 (51.63%), Query Frame = 3
Query:  276 VKFYELKKGDFSVKFTNWGATIVSVFLPXXXXXXXXXXXXXXSVDDYKNDTTYFGSVVGRVANRIGGAQFTLDGTHYKLVANEKSNMLHGGPKGFSDVIWKVKTYENEGPTPKIVFSYHSTDGEEGFPGDLDVTVSYSLTGEKELKCKMKAKA 734
            V+ ++L+     V   +WG TI ++ +                ++ Y     YFG+VVGRVANRI    FTLDG  YKL  N   N LHGG KGF  V+W  +   N      + FS  S DGEEG+PG+L V V Y+L G  EL    +A+A
Sbjct:   19 VEKFQLQSDQLRVDIISWGCTITALEVKDRQGRASDVVLGFDELEGYLQKQPYFGAVVGRVANRIAKGTFTLDGKEYKLAINNGPNSLHGGVKGFDKVLWTPRVLSN-----GVEFSRVSPDGEEGYPGELKVWVMYTLDG-GELVVNYRAQA 165          
BLAST of FC923662 vs. ExPASy Swiss-Prot
Match: GALM_PIG (Aldose 1-epimerase OS=Sus scrofa GN=GALM PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.325e-22
Identity = 60/153 (39.22%), Postives = 80/153 (52.29%), Query Frame = 3
Query:  276 VKFYELKKGDFSVKFTNWGATIVSVFLPXXXXXXXXXXXXXXSVDDYKNDTTYFGSVVGRVANRIGGAQFTLDGTHYKLVANEKSNMLHGGPKGFSDVIWKVKTYENEGPTPKIVFSYHSTDGEEGFPGDLDVTVSYSLTGEKELKCKMKAKA 734
            V+ ++L+     V   +WG TI ++ +                + +Y     YFG+VVGRVANRI    FTLDG  YKL  N   N LHGG +GF  V+W  +   N      I FS  S DGEEG+PG+L V V+Y+L G  EL    +A+A
Sbjct:   19 VEKFQLQSDQLRVDIISWGCTITALEVKDRQGRASDVVLGFAELKEYLQKHPYFGAVVGRVANRIAKGTFTLDGKEYKLAINNGPNSLHGGVRGFDKVLWTPRVLSN-----GIEFSRVSPDGEEGYPGELKVWVTYTLDG-GELVVNYRAQA 165          
BLAST of FC923662 vs. ExPASy Swiss-Prot
Match: GALM_RAT (Aldose 1-epimerase OS=Rattus norvegicus GN=Galm PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.628e-21
Identity = 57/153 (37.25%), Postives = 82/153 (53.59%), Query Frame = 3
Query:  276 VKFYELKKGDFSVKFTNWGATIVSVFLPXXXXXXXXXXXXXXSVDDYKNDTTYFGSVVGRVANRIGGAQFTLDGTHYKLVANEKSNMLHGGPKGFSDVIWKVKTYENEGPTPKIVFSYHSTDGEEGFPGDLDVTVSYSLTGEKELKCKMKAKA 734
            V+ ++L+    +V   +WG TI ++ +                ++ Y     YFG+VVGRVANRI   +FT+DG  Y L  N + N LHGG +GF  V+W  +   N      + FS  S DGEEG+PG+L V V+Y+L G  EL    +A+A
Sbjct:   19 VEKFQLRSDQLNVDIISWGCTITALQVKDRQGKASDVVLGFAELEGYLQKQPYFGAVVGRVANRIAKGRFTVDGKEYHLPINREPNSLHGGFRGFDKVLWTPQVLSN-----GVQFSRVSPDGEEGYPGELKVWVTYTLDG-GELVVNYRAQA 165          
BLAST of FC923662 vs. ExPASy Swiss-Prot
Match: GALM_PONAB (Aldose 1-epimerase OS=Pongo abelii GN=GALM PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.117e-20
Identity = 56/153 (36.60%), Postives = 80/153 (52.29%), Query Frame = 3
Query:  276 VKFYELKKGDFSVKFTNWGATIVSVFLPXXXXXXXXXXXXXXSVDDYKNDTTYFGSVVGRVANRIGGAQFTLDGTHYKLVANEKSNMLHGGPKGFSDVIWKVKTYENEGPTPKIVFSYHSTDGEEGFPGDLDVTVSYSLTGEKELKCKMKAKA 734
            V+ ++L+     V   +WG TI ++ +                ++ Y     YFG+V+GRVANRI    F +DG  Y L  N++ N LHGG +GF  V+W  +   N      I FS  S DGEEG+PG+L V V+Y+L G  EL    +A+A
Sbjct:   19 VEKFQLQSDLLRVDIISWGCTITALEVKDRQGRSSDVVLGFAELEGYLQKQPYFGAVIGRVANRIAKGTFKVDGKEYHLAINKEPNSLHGGVRGFDKVLWTPRVLSN-----GIQFSRISPDGEEGYPGELKVWVTYTLDG-GELVVNYRAQA 165          
BLAST of FC923662 vs. ExPASy Swiss-Prot
Match: GALM_HUMAN (Aldose 1-epimerase OS=Homo sapiens GN=GALM PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.728e-20
Identity = 55/153 (35.95%), Postives = 80/153 (52.29%), Query Frame = 3
Query:  276 VKFYELKKGDFSVKFTNWGATIVSVFLPXXXXXXXXXXXXXXSVDDYKNDTTYFGSVVGRVANRIGGAQFTLDGTHYKLVANEKSNMLHGGPKGFSDVIWKVKTYENEGPTPKIVFSYHSTDGEEGFPGDLDVTVSYSLTGEKELKCKMKAKA 734
            V+ ++L+     V   +WG TI ++ +                ++ Y     YFG+V+GRVANRI    F +DG  Y L  N++ N LHGG +GF  V+W  +   N      + FS  S DGEEG+PG+L V V+Y+L G  EL    +A+A
Sbjct:   19 VEKFQLQSDLLRVDIISWGCTITALEVKDRQGRASDVVLGFAELEGYLQKQPYFGAVIGRVANRIAKGTFKVDGKEYHLAINKEPNSLHGGVRGFDKVLWTPRVLSN-----GVQFSRISPDGEEGYPGELKVWVTYTLDG-GELIVNYRAQA 165          
BLAST of FC923662 vs. ExPASy Swiss-Prot
Match: GALM_MOUSE (Aldose 1-epimerase OS=Mus musculus GN=Galm PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.140e-19
Identity = 56/153 (36.60%), Postives = 79/153 (51.63%), Query Frame = 3
Query:  276 VKFYELKKGDFSVKFTNWGATIVSVFLPXXXXXXXXXXXXXXSVDDYKNDTTYFGSVVGRVANRIGGAQFTLDGTHYKLVANEKSNMLHGGPKGFSDVIWKVKTYENEGPTPKIVFSYHSTDGEEGFPGDLDVTVSYSLTGEKELKCKMKAKA 734
            V+ ++L+    SV   +WG TI ++ +                ++ Y     YFG+VVGRVANRI   +FT+ G  Y L  N + N LHGG  GF  V+W  +   N      + F   S DGEEG+PG+L V V+Y+L G  EL    +A+A
Sbjct:   19 VEKFQLRSDQLSVDIISWGCTITALQVKDRQGKASDVVLGFAELEGYLQKQPYFGAVVGRVANRIAKGRFTIGGKEYHLPVNREPNSLHGGFTGFDKVLWTPQVLTN-----GVQFFRVSPDGEEGYPGELKVWVTYTLDG-GELVINYRAQA 165          
BLAST of FC923662 vs. ExPASy Swiss-Prot
Match: GALM_HAEIN (Aldose 1-epimerase OS=Haemophilus influenzae GN=galM PE=3 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.489e-19
Identity = 54/134 (40.30%), Postives = 78/134 (58.21%), Query Frame = 3
Query:  312 VKFTNWGATIVSVFLPXXXXXXXXXXXXXXSVDDYKNDTTYFGSVVGRVANRIGGAQFTLDGTHYKLVANEKSNMLHGGPKGFSDVIWKVKTYENEGPTPKIVFSYHSTDGEEGFPGDLDVTVSYSLTGEKELK 713
            V+F +WGAT +S  +P               VD+Y    +Y G+ VGR ANRI  AQF L+G   KL +N+  + LHGG +GF    W ++    E     + FS HS DG++GFPG++DV+V+Y+LTG+  +K
Sbjct:   28 VQFMDWGATWLSCKVPVNDTLREVLLGC--KVDNYPTHQSYLGASVGRYANRIANAQFELNGELIKLSSNQGKHQLHGG-EGFDKRRWNIQ----ECGENFVCFSLHSVDGDQGFPGNVDVSVTYTLTGDNSVK 154          
BLAST of FC923662 vs. ExPASy Swiss-Prot
Match: GALM_SHIFL (Aldose 1-epimerase OS=Shigella flexneri GN=galM PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.169e-18
Identity = 44/139 (31.65%), Postives = 73/139 (52.52%), Query Frame = 3
Query:  312 VKFTNWGATIVSVFLPXXXXXXXXXXXXXXSVDDYKNDTTYFGSVVGRVANRIGGAQFTLDGTHYKLVANEKSNMLHGGPKGFSDVIWKVKTYENEGPTPKIVFSYHSTDGEEGFPGDLDVTVSYSLTGEKELKCKMKA 728
            V   +WGAT++S  +P              S + Y++   + G+ +GR ANRI  +++T DG    L  ++  N LHGGP+GF    W++    +     +++F+  S DG++GFPG+L  TV Y LT +  +    +A
Sbjct:   28 VTLMDWGATLLSARIPLSDGSVREALLGCASPECYQDQAAFLGASIGRYANRIANSRYTFDGETVTLSPSQGVNQLHGGPEGFDKRRWQIVNQNDR----QVLFALSSDDGDQGFPGNLGATVQYRLTDDNRISITYRA 162          
BLAST of FC923662 vs. ExPASy Swiss-Prot
Match: GALM_ECOLI (Aldose 1-epimerase OS=Escherichia coli (strain K12) GN=galM PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.169e-18
Identity = 44/139 (31.65%), Postives = 73/139 (52.52%), Query Frame = 3
Query:  312 VKFTNWGATIVSVFLPXXXXXXXXXXXXXXSVDDYKNDTTYFGSVVGRVANRIGGAQFTLDGTHYKLVANEKSNMLHGGPKGFSDVIWKVKTYENEGPTPKIVFSYHSTDGEEGFPGDLDVTVSYSLTGEKELKCKMKA 728
            V   +WGAT++S  +P              S + Y++   + G+ +GR ANRI  +++T DG    L  ++  N LHGGP+GF    W++    +     +++F+  S DG++GFPG+L  TV Y LT +  +    +A
Sbjct:   28 VTLMDWGATLLSARIPLSDGSVREALLGCASPECYQDQAAFLGASIGRYANRIANSRYTFDGETVTLSPSQGVNQLHGGPEGFDKRRWQIVNQNDR----QVLFALSSDDGDQGFPGNLGATVQYRLTDDNRISITYRA 162          
The following BLAST results are available for this feature:
BLAST of FC923662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
GALM_ACICA2.454e-2232.63Aldose 1-epimerase OS=Acinetobacter calcoaceticus ... [more]
GALM_BOVIN7.140e-2239.22Aldose 1-epimerase OS=Bos taurus GN=GALM PE=2 SV=1[more]
GALM_PIG9.325e-2239.22Aldose 1-epimerase OS=Sus scrofa GN=GALM PE=2 SV=1[more]
GALM_RAT4.628e-2137.25Aldose 1-epimerase OS=Rattus norvegicus GN=Galm PE... [more]
GALM_PONAB5.117e-2036.60Aldose 1-epimerase OS=Pongo abelii GN=GALM PE=2 SV... [more]
GALM_HUMAN8.728e-2035.95Aldose 1-epimerase OS=Homo sapiens GN=GALM PE=1 SV... [more]
GALM_MOUSE1.140e-1936.60Aldose 1-epimerase OS=Mus musculus GN=Galm PE=2 SV... [more]
GALM_HAEIN1.489e-1940.30Aldose 1-epimerase OS=Haemophilus influenzae GN=ga... [more]
GALM_SHIFL8.169e-1831.65Aldose 1-epimerase OS=Shigella flexneri GN=galM PE... [more]
GALM_ECOLI8.169e-1831.65Aldose 1-epimerase OS=Escherichia coli (strain K12... [more]

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Properties
Property NameValue
Genbank descriptionC31707F03EF StrClemenN Citrus clementina cDNA clone C31707F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923662 ID=FC923662; Name=FC923662; organism=Citrus clementina; type=EST; length=759bp
GAGAAATCATATCTTTATTGGATAAACTCGTCATCATTTTCAATGGACGC
CCATAATTCTCTTATTTACTATTTTTGTATTGCTGTATTCAGCAACCCTT
ATAAATAAATCCACCGCGACATGTTCCTATAGAGGCATCTGTTTCTGCAA
TAAAAATGGCGAGACTCTATTTGTCTTTGTGTTTTGTCGCTTTAGTTGCT
ATCGGGTTCATTGTTAATGGCTCTGTAGCTGATGAGGATAAGAAGAATGA
ATGTGACAAAAACAATTCTGAGGAGGTTAAATTTTATGAACTCAAGAAAG
GAGATTTCTCCGTTAAGTTTACCAACTGGGGTGCCACTATTGTTTCTGTT
TTTCTCCCTGACAAGGATGGTAAGGTAGATGACGTTGTACTTGGATATGA
TTCAGTCGATGATTACAAGAATGATACAACCTATTTCGGTTCTGTTGTTG
GACGGGTTGCTAACAGAATCGGAGGCGCTCAATTTACTTTAGATGGAACC
CATTATAAACTGGTTGCTAATGAAAAGTCAAACATGCTTCATGGTGGCCC
GAAAGGCTTTAGTGATGTAATCTGGAAAGTAAAGACCTACGAGAATGAAG
GTCCTACTCCTAAGATTGTCTTCTCCTATCATAGCACTGATGGTGAAGAA
GGATTCCCTGGTGATCTCGATGTCACTGTGAGTTACTCTCTCACCGGCGA
GAAGGAACTAAAGTGTAAAATGAAAGCCAAGGCTAGAAACAAGCTACTCC
AGTAAATCT
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